Wall clock time and date at job start Mon Mar 30 2020 01:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86794 * 120.00206 * 2 1 4 4 H 1.48496 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46961 * 300.00359 * 3 2 1 6 6 H 1.48506 * 109.47129 * 59.99808 * 3 2 1 7 7 C 1.39026 * 119.99426 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99169 * 193.48133 * 7 2 1 9 9 N 1.36899 * 120.00123 * 13.76056 * 7 2 1 10 10 C 1.34780 * 120.00172 * 191.76233 * 9 7 2 11 11 O 1.21628 * 119.99401 * 3.62675 * 10 9 7 12 12 C 1.47435 * 120.00266 * 183.62649 * 10 9 7 13 13 C 1.39868 * 120.16428 * 308.95966 * 12 10 9 14 14 C 1.37728 * 119.97453 * 180.02562 * 13 12 10 15 15 C 1.38546 * 120.36815 * 359.97438 * 14 13 12 16 16 C 1.38454 * 120.38206 * 359.97438 * 15 14 13 17 17 C 1.39263 * 119.91905 * 359.77247 * 16 15 14 18 18 O 1.36218 * 108.72822 * 180.28016 * 17 16 15 19 19 C 1.43983 * 105.50981 * 17.51811 * 18 17 16 20 20 O 1.36537 * 131.49848 * 180.02562 * 16 15 14 21 21 C 1.46507 * 120.00143 * 11.76280 * 9 7 2 22 22 C 1.53007 * 117.49427 * 127.86883 * 21 9 7 23 23 C 1.53004 * 117.49670 * 59.24615 * 21 9 7 24 24 H 0.97011 * 119.99772 * 4.94804 * 1 2 3 25 25 H 1.08000 * 120.01118 * 0.02562 * 13 12 10 26 26 H 1.08003 * 119.81800 * 179.97438 * 14 13 12 27 27 H 1.08000 * 119.80885 * 180.02562 * 15 14 13 28 28 H 1.08998 * 110.57815 * 91.44347 * 19 18 17 29 29 H 1.09001 * 110.57490 * 214.32618 * 19 18 17 30 30 H 1.08997 * 115.55044 * 273.57192 * 21 9 7 31 31 H 1.08997 * 117.50068 * 359.97438 * 22 21 9 32 32 H 1.09002 * 117.49300 * 145.02743 * 22 21 9 33 33 H 1.08997 * 117.49394 * 214.97491 * 23 21 9 34 34 H 1.08996 * 117.49819 * 359.97337 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6176 0.0000 4 1 3.7078 1.3463 -0.0006 5 1 1.8891 2.3964 -1.2125 6 1 1.8891 2.3964 1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 3.0665 -1.2170 0.2175 9 7 1.3537 -2.3725 -0.2831 10 6 1.9576 -3.5557 -0.0554 11 8 3.0578 -3.5873 0.4621 12 6 1.2845 -4.8117 -0.4336 13 6 -0.0310 -5.0547 -0.0253 14 6 -0.6559 -6.2296 -0.3804 15 6 0.0112 -7.1753 -1.1421 16 6 1.3133 -6.9498 -1.5554 17 6 1.9566 -5.7643 -1.2087 18 8 3.2133 -5.7788 -1.7342 19 6 3.1933 -6.7971 -2.7520 20 8 2.1709 -7.7090 -2.2986 21 6 -0.0038 -2.3367 -0.8329 22 6 -0.2704 -3.1379 -2.1089 23 6 -0.2079 -1.6100 -2.1638 24 1 -0.4850 0.8370 -0.0725 25 1 -0.5566 -4.3213 0.5683 26 1 -1.6716 -6.4148 -0.0633 27 1 -0.4875 -8.0933 -1.4158 28 1 2.9318 -6.3672 -3.7189 29 1 4.1565 -7.3046 -2.8051 30 1 -0.8070 -2.2771 -0.0986 31 1 0.5642 -3.6912 -2.5394 32 1 -1.2494 -3.6056 -2.2141 33 1 -1.1457 -1.0728 -2.3051 34 1 0.6676 -1.1583 -2.6300 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:57 Heat of formation + Delta-G solvation = -16.632855 kcal Electronic energy + Delta-G solvation = -21794.828435 eV Core-core repulsion = 18467.967222 eV Total energy + Delta-G solvation = -3326.861212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.88895 -39.13858 -37.00457 -36.17671 -35.80235 -33.05902 -31.30333 -30.29896 -29.67988 -25.63962 -25.37998 -23.24402 -22.55855 -21.62647 -21.31560 -19.48710 -17.81519 -17.40687 -17.08333 -16.74475 -16.14622 -15.40733 -15.03561 -14.38329 -14.33800 -14.07749 -13.90945 -13.51670 -13.14714 -12.85011 -12.67818 -12.47152 -12.08753 -11.81140 -11.51425 -11.15305 -11.04546 -10.73185 -10.67599 -10.35039 -10.33827 -10.01452 -9.39233 -8.85103 -8.55568 -8.26303 -7.88981 -7.79150 -6.34760 -3.85650 1.34239 1.46210 3.00060 3.12092 3.24042 3.30951 3.60713 3.68221 4.02279 4.17139 4.56642 4.74003 4.81525 4.92794 5.01521 5.11896 5.27561 5.40767 5.47436 5.51691 5.69133 5.81406 5.98980 6.14909 6.27350 6.30791 6.35699 6.56292 6.61688 6.74251 6.76710 6.95153 7.17316 7.38522 7.51806 8.00036 8.42729 9.12363 9.35174 9.91173 10.65532 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.026745 B = 0.006359 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.673458 B = 4402.118472 C = 4845.730377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.036 3.964 3 Si 0.921 3.079 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.408 5.408 10 C 0.479 3.521 11 O -0.578 6.578 12 C -0.064 4.064 13 C -0.075 4.075 14 C -0.119 4.119 15 C -0.101 4.101 16 C 0.017 3.983 17 C 0.066 3.934 18 O -0.292 6.292 19 C 0.209 3.791 20 O -0.314 6.314 21 C 0.138 3.862 22 C -0.219 4.219 23 C -0.140 4.140 24 H 0.267 0.733 25 H 0.141 0.859 26 H 0.137 0.863 27 H 0.130 0.870 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 -9.651 -5.884 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.125 5.125 10 C 0.268 3.732 11 O -0.462 6.462 12 C -0.068 4.068 13 C -0.094 4.094 14 C -0.137 4.137 15 C -0.120 4.120 16 C -0.027 4.027 17 C 0.020 3.980 18 O -0.207 6.207 19 C 0.097 3.903 20 O -0.231 6.231 21 C 0.033 3.967 22 C -0.257 4.257 23 C -0.177 4.177 24 H 0.078 0.922 25 H 0.158 0.842 26 H 0.154 0.846 27 H 0.148 0.852 28 H 0.099 0.901 29 H 0.145 0.855 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.720 -9.564 -5.569 11.676 hybrid contribution 0.429 0.884 -0.347 1.042 sum -3.291 -8.680 -5.917 11.008 Atomic orbital electron populations 1.69989 1.05798 1.27659 1.46789 1.25202 0.95461 0.99441 0.96704 0.85936 0.80071 0.81420 0.77802 1.19221 1.20604 1.20684 1.19790 0.94800 0.82750 1.45871 0.87722 1.43136 1.12356 1.04600 1.52388 1.17529 0.87203 0.82626 0.85822 1.90656 1.21237 1.86328 1.48027 1.19268 0.93490 0.94837 0.99175 1.21175 0.92209 0.97295 0.98693 1.20751 1.00238 0.93495 0.99232 1.20002 0.89820 1.01074 1.01066 1.19676 0.93031 0.90024 0.99967 1.19688 0.83837 0.94935 0.99513 1.87460 1.26701 1.56025 1.50528 1.25672 0.92890 0.80363 0.91401 1.87381 1.36192 1.32913 1.66607 1.21081 0.86083 1.00938 0.88577 1.23610 1.01674 0.95692 1.04716 1.22764 1.01951 0.91692 1.01339 0.92201 0.84156 0.84553 0.85211 0.90115 0.85522 0.87007 0.90244 0.89220 0.89556 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.64 9.80 55.50 0.54 -21.10 16 2 C 0.04 0.93 4.93 -17.45 -0.09 0.85 16 3 Si 0.92 20.37 29.58 -169.99 -5.03 15.34 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.43 9.33 -15.00 -0.14 -8.57 16 8 H 0.11 3.08 7.28 -52.49 -0.38 2.70 16 9 N -0.41 -10.45 2.93 -108.92 -0.32 -10.77 16 10 C 0.48 12.38 7.07 -12.51 -0.09 12.29 16 11 O -0.58 -17.17 16.68 5.25 0.09 -17.09 16 12 C -0.06 -1.33 3.57 -104.88 -0.37 -1.71 16 13 C -0.07 -1.27 7.17 -39.16 -0.28 -1.55 16 14 C -0.12 -1.60 10.02 -39.65 -0.40 -1.99 16 15 C -0.10 -1.39 10.05 -39.39 -0.40 -1.79 16 16 C 0.02 0.29 7.14 -39.12 -0.28 0.01 16 17 C 0.07 1.31 6.77 -38.54 -0.26 1.05 16 18 O -0.29 -5.78 11.39 -44.77 -0.51 -6.29 16 19 C 0.21 2.90 8.90 101.05 0.90 3.80 16 20 O -0.31 -4.87 11.43 -45.81 -0.52 -5.39 16 21 C 0.14 3.01 2.38 -67.92 -0.16 2.85 16 22 C -0.22 -4.01 7.69 -26.72 -0.21 -4.21 16 23 C -0.14 -2.84 8.42 -26.72 -0.22 -3.07 16 24 H 0.27 6.35 8.32 -40.82 -0.34 6.01 16 25 H 0.14 2.32 6.87 -52.49 -0.36 1.96 16 26 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 27 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.11 2.46 7.43 -51.93 -0.39 2.07 16 31 H 0.08 1.55 7.13 -51.93 -0.37 1.18 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 LS Contribution 290.41 15.07 4.38 4.38 Total: -1.00 -32.23 290.41 -6.96 -39.19 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -3.59 Total: 3.77 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.00 Total: -2.04 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.22 Total: -31.87 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.95 Total: -28.77 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.23 -6.96 -39.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.561 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds