Wall clock time and date at job start Mon Mar 30 2020 02:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35958 * 116.99868 * 2 1 4 4 C 1.39125 * 119.96424 * 359.97438 * 3 2 1 5 5 C 1.37796 * 120.60099 * 180.02562 * 4 3 2 6 6 C 1.38975 * 120.05108 * 359.97438 * 5 4 3 7 7 O 1.34996 * 133.02364 * 180.02562 * 6 5 4 8 8 C 1.33798 * 111.35014 * 180.02562 * 7 6 5 9 9 C 1.50707 * 125.08118 * 180.02562 * 8 7 6 10 10 C 1.36155 * 109.83664 * 0.02562 * 8 7 6 11 11 C 1.46976 * 127.14666 * 180.02562 * 10 8 7 12 12 O 1.21686 * 119.99883 * 269.97156 * 11 10 8 13 13 N 1.34769 * 120.00273 * 89.97129 * 11 10 8 14 14 C 1.36951 * 120.00094 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00309 * 359.97438 * 14 13 11 16 16 C 1.38984 * 120.00019 * 179.97438 * 14 13 11 17 17 N 1.31409 * 120.00050 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99843 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47027 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46940 * 120.00351 * 18 16 14 21 21 H 1.48495 * 109.46898 * 240.00431 * 18 16 14 22 22 C 1.40214 * 119.34163 * 0.02562 * 6 5 4 23 23 C 1.38305 * 119.96050 * 179.76334 * 3 2 1 24 24 H 1.08998 * 109.47042 * 299.99934 * 1 2 3 25 25 H 1.09000 * 109.46727 * 60.00317 * 1 2 3 26 26 H 1.09001 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.69579 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.96913 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.46888 * 269.96344 * 9 8 7 30 30 H 1.08998 * 109.46891 * 29.95984 * 9 8 7 31 31 H 1.09001 * 109.46770 * 149.96177 * 9 8 7 32 32 H 0.97001 * 119.99889 * 0.02562 * 13 11 10 33 33 H 0.97000 * 120.00265 * 180.02562 * 17 16 14 34 34 H 1.08005 * 120.20706 * 359.94565 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2878 2.3777 -0.0005 5 6 1.8997 3.6124 -0.0011 6 6 3.2866 3.7018 -0.0005 7 8 4.1422 4.7459 -0.0004 8 6 5.4148 4.3328 -0.0004 9 6 6.6195 5.2384 0.0003 10 6 5.4588 2.9720 -0.0011 11 6 6.6585 2.1228 -0.0008 12 8 7.1554 1.7714 -1.0545 13 7 7.2081 1.7333 1.1665 14 6 8.3262 0.9425 1.1667 15 1 8.7673 0.6306 0.2315 16 6 8.8933 0.5412 2.3705 17 7 8.3564 0.9203 3.5084 18 14 10.4180 -0.5381 2.3708 19 1 10.8224 -0.8239 0.9708 20 1 11.5225 0.1657 3.0708 21 1 10.1214 -1.8136 3.0710 22 6 4.0509 2.5263 0.0000 23 6 3.4275 1.2829 0.0049 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2097 2.3148 -0.0005 28 1 1.3009 4.5112 -0.0019 29 1 6.9104 5.4567 -1.0271 30 1 6.3748 6.1681 0.5139 31 1 7.4444 4.7453 0.5146 32 1 6.8117 2.0131 2.0065 33 1 8.7524 0.6406 4.3486 34 1 4.0184 0.3788 0.0097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069452783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:07 Heat of formation + Delta-G solvation = -47.303495 kcal Electronic energy + Delta-G solvation = -20564.548160 eV Core-core repulsion = 17236.356969 eV Total energy + Delta-G solvation = -3328.191191 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.20560 -39.57521 -37.94572 -36.42537 -33.97509 -32.88155 -31.15552 -30.99211 -29.97698 -27.20913 -26.94875 -25.12175 -22.73085 -22.27759 -21.20478 -19.10998 -18.06510 -17.98160 -17.08463 -16.18703 -16.07570 -15.63188 -15.35753 -15.05162 -14.47789 -13.97898 -13.89096 -13.60970 -13.14167 -12.91972 -12.87512 -12.52497 -12.50045 -12.27527 -12.20063 -11.60462 -11.54578 -11.11281 -10.82135 -10.61408 -10.36348 -10.28889 -9.75808 -9.56585 -8.60764 -8.02258 -7.97466 -7.73667 -6.46409 -3.87068 1.01106 1.52437 2.48132 2.85796 3.12969 3.25723 3.27375 3.33390 3.73463 3.81920 4.15352 4.63038 4.71880 4.86910 5.04619 5.05507 5.11688 5.17670 5.23816 5.35961 5.46988 5.57989 5.65563 5.70974 5.84403 6.07997 6.15363 6.26124 6.32779 6.48451 6.56665 6.69074 7.30197 7.48301 7.51325 8.01440 8.55279 9.11673 9.48900 10.00399 10.70706 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.005380 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.531302 B = 5203.585738 C = 6294.974482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.109 3.891 4 C -0.183 4.183 5 C -0.068 4.068 6 C 0.016 3.984 7 O -0.190 6.190 8 C 0.066 3.934 9 C -0.078 4.078 10 C -0.188 4.188 11 C 0.504 3.496 12 O -0.587 6.587 13 N -0.543 5.543 14 C -0.303 4.303 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.894 5.894 18 Si 0.931 3.069 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.059 4.059 23 C -0.100 4.100 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.395 0.605 33 H 0.273 0.727 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.081 5.409 -2.842 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.064 3.936 4 C -0.201 4.201 5 C -0.086 4.086 6 C -0.030 4.030 7 O -0.092 6.092 8 C 0.017 3.983 9 C -0.134 4.134 10 C -0.192 4.192 11 C 0.289 3.711 12 O -0.472 6.472 13 N -0.178 5.178 14 C -0.433 4.433 15 H 0.124 0.876 16 C -0.177 4.177 17 N -0.535 5.535 18 Si 0.758 3.242 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.060 4.060 23 C -0.119 4.119 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.229 0.771 33 H 0.083 0.917 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.681 5.194 -3.328 15.008 hybrid contribution 0.169 -0.403 0.631 0.768 sum -13.512 4.791 -2.697 14.588 Atomic orbital electron populations 1.23030 0.78755 1.03800 1.01121 1.86112 1.20986 1.26514 1.89224 1.18625 0.91640 0.84183 0.99171 1.20883 0.99818 0.90995 1.08429 1.19565 0.88765 0.97998 1.02314 1.19378 0.91620 0.84780 1.07268 1.83727 1.14787 1.33945 1.76712 1.22622 0.83302 0.93048 0.99374 1.20488 0.90952 0.97778 1.04199 1.21032 0.93261 0.93132 1.11814 1.16652 0.84230 0.85217 0.84973 1.90650 1.64663 1.60545 1.31387 1.41868 1.25583 1.43807 1.06501 1.19803 1.03231 1.25593 0.94632 0.87575 1.25323 0.99574 0.98209 0.94580 1.69635 1.40909 1.45283 0.97656 0.85776 0.80517 0.79219 0.78711 1.19064 1.20636 1.20636 1.19337 0.92032 0.92991 1.01670 1.19656 0.91162 0.97335 1.03713 0.92740 0.92802 0.88383 0.84485 0.84873 0.89331 0.90149 0.88294 0.77146 0.91715 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.49 10.49 -19.61 -0.21 -4.70 16 3 C 0.11 1.69 6.68 -39.23 -0.26 1.43 16 4 C -0.18 -2.34 9.01 -39.41 -0.36 -2.70 16 5 C -0.07 -0.92 10.06 -39.47 -0.40 -1.32 16 6 C 0.02 0.28 7.39 -38.57 -0.28 -0.01 16 7 O -0.19 -3.28 10.53 5.10 0.05 -3.23 16 8 C 0.07 1.20 7.30 -35.05 -0.26 0.94 16 9 C -0.08 -1.14 10.20 36.01 0.37 -0.77 16 10 C -0.19 -4.05 6.06 -103.25 -0.63 -4.67 16 11 C 0.50 12.84 7.15 -12.72 -0.09 12.75 16 12 O -0.59 -16.95 16.68 5.20 0.09 -16.86 16 13 N -0.54 -14.29 5.28 -12.08 -0.06 -14.35 16 14 C -0.30 -8.48 9.68 -14.99 -0.15 -8.63 16 15 H 0.11 3.10 7.15 -52.48 -0.38 2.72 16 16 C 0.03 0.69 5.50 -17.46 -0.10 0.59 16 17 N -0.89 -24.34 13.05 55.50 0.72 -23.62 16 18 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.06 -1.16 6.38 -104.98 -0.67 -1.83 16 23 C -0.10 -1.88 10.03 -39.24 -0.39 -2.27 16 24 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 25 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.14 1.25 6.27 -52.49 -0.33 0.92 16 28 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.58 7.87 -51.93 -0.41 1.17 16 32 H 0.39 10.16 7.88 -40.82 -0.32 9.84 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.14 2.74 8.06 -52.48 -0.42 2.32 16 LS Contribution 305.48 15.07 4.60 4.60 Total: -1.00 -33.10 305.48 -5.52 -38.62 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -3.48 Total: 8.95 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.22 Total: -5.24 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.66 Total: -37.97 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.07 Total: -24.79 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.10 -5.52 -38.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069452783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.686 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds