Wall clock time and date at job start Mon Mar 30 2020 02:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35958 * 116.99868 * 2 1 4 4 C 1.39125 * 119.96424 * 359.97438 * 3 2 1 5 5 C 1.37796 * 120.60099 * 180.02562 * 4 3 2 6 6 C 1.38975 * 120.05108 * 359.97438 * 5 4 3 7 7 O 1.34996 * 133.02364 * 180.02562 * 6 5 4 8 8 C 1.33798 * 111.35014 * 180.02562 * 7 6 5 9 9 C 1.50707 * 125.08118 * 180.02562 * 8 7 6 10 10 C 1.36155 * 109.83664 * 0.02562 * 8 7 6 11 11 C 1.46976 * 127.14666 * 180.02562 * 10 8 7 12 12 O 1.21686 * 119.99883 * 269.97156 * 11 10 8 13 13 N 1.34769 * 120.00273 * 89.97129 * 11 10 8 14 14 C 1.36951 * 120.00094 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00309 * 359.97438 * 14 13 11 16 16 C 1.38984 * 120.00019 * 179.97438 * 14 13 11 17 17 N 1.31409 * 120.00050 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99843 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47027 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46940 * 120.00351 * 18 16 14 21 21 H 1.48495 * 109.46898 * 240.00431 * 18 16 14 22 22 C 1.40214 * 119.34163 * 0.02562 * 6 5 4 23 23 C 1.38305 * 119.96050 * 179.76334 * 3 2 1 24 24 H 1.08998 * 109.47042 * 299.99934 * 1 2 3 25 25 H 1.09000 * 109.46727 * 60.00317 * 1 2 3 26 26 H 1.09001 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.69579 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.96913 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.46888 * 269.96344 * 9 8 7 30 30 H 1.08998 * 109.46891 * 29.95984 * 9 8 7 31 31 H 1.09001 * 109.46770 * 149.96177 * 9 8 7 32 32 H 0.97001 * 119.99889 * 0.02562 * 13 11 10 33 33 H 0.97000 * 120.00265 * 180.02562 * 17 16 14 34 34 H 1.08005 * 120.20706 * 359.94565 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2878 2.3777 -0.0005 5 6 1.8997 3.6124 -0.0011 6 6 3.2866 3.7018 -0.0005 7 8 4.1422 4.7459 -0.0004 8 6 5.4148 4.3328 -0.0004 9 6 6.6195 5.2384 0.0003 10 6 5.4588 2.9720 -0.0011 11 6 6.6585 2.1228 -0.0008 12 8 7.1554 1.7714 -1.0545 13 7 7.2081 1.7333 1.1665 14 6 8.3262 0.9425 1.1667 15 1 8.7673 0.6306 0.2315 16 6 8.8933 0.5412 2.3705 17 7 8.3564 0.9203 3.5084 18 14 10.4180 -0.5381 2.3708 19 1 10.8224 -0.8239 0.9708 20 1 11.5225 0.1657 3.0708 21 1 10.1214 -1.8136 3.0710 22 6 4.0509 2.5263 0.0000 23 6 3.4275 1.2829 0.0049 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2097 2.3148 -0.0005 28 1 1.3009 4.5112 -0.0019 29 1 6.9104 5.4567 -1.0271 30 1 6.3748 6.1681 0.5139 31 1 7.4444 4.7453 0.5146 32 1 6.8117 2.0131 2.0065 33 1 8.7524 0.6406 4.3486 34 1 4.0184 0.3788 0.0097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069452783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:06 Heat of formation + Delta-G solvation = -70.515038 kcal Electronic energy + Delta-G solvation = -20565.554688 eV Core-core repulsion = 17236.356969 eV Total energy + Delta-G solvation = -3329.197719 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.56778 -40.69258 -39.98163 -37.59447 -36.08455 -34.37634 -33.21979 -32.20742 -31.19402 -28.41844 -28.01160 -27.04197 -24.00749 -23.93514 -22.45081 -20.84248 -20.05209 -19.13311 -18.71891 -17.56194 -17.31108 -17.03958 -16.58197 -16.50430 -16.23188 -15.84773 -15.42765 -15.02527 -14.48863 -14.34520 -14.04570 -14.02711 -13.85440 -13.61520 -13.31191 -13.28197 -12.97870 -12.61759 -12.49527 -12.13897 -11.83419 -11.80846 -11.60868 -11.14734 -10.66881 -10.14171 -9.24924 -9.07827 -8.54767 -6.05611 -0.25529 0.27195 1.04407 1.31130 1.40091 1.53034 1.56364 1.80082 2.25953 2.28755 2.56169 3.07872 3.11136 3.40927 3.68303 3.84491 4.02219 4.17615 4.18319 4.32081 4.43793 4.45981 4.50380 4.56360 4.63656 4.76565 4.87996 4.99165 5.11089 5.18424 5.23161 5.33834 5.37492 5.88851 5.98732 6.39343 6.45248 6.99386 7.39587 7.94134 8.62712 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.005380 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.531302 B = 5203.585738 C = 6294.974482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.339 6.339 3 C 0.122 3.878 4 C -0.167 4.167 5 C -0.046 4.046 6 C -0.002 4.002 7 O -0.177 6.177 8 C 0.090 3.910 9 C -0.079 4.079 10 C -0.246 4.246 11 C 0.510 3.490 12 O -0.632 6.632 13 N -0.547 5.547 14 C -0.341 4.341 15 H 0.084 0.916 16 C -0.007 4.007 17 N -0.915 5.915 18 Si 1.000 3.000 19 H -0.271 1.271 20 H -0.264 1.264 21 H -0.270 1.270 22 C -0.084 4.084 23 C -0.150 4.150 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.188 0.812 28 H 0.181 0.819 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.395 0.605 33 H 0.282 0.718 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.641 6.819 -2.289 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.253 6.253 3 C 0.077 3.923 4 C -0.185 4.185 5 C -0.064 4.064 6 C -0.048 4.048 7 O -0.078 6.078 8 C 0.040 3.960 9 C -0.134 4.134 10 C -0.250 4.250 11 C 0.298 3.702 12 O -0.521 6.521 13 N -0.181 5.181 14 C -0.470 4.470 15 H 0.102 0.898 16 C -0.208 4.208 17 N -0.554 5.554 18 Si 0.822 3.178 19 H -0.195 1.195 20 H -0.189 1.189 21 H -0.195 1.195 22 C -0.086 4.086 23 C -0.169 4.169 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.134 0.866 27 H 0.205 0.795 28 H 0.199 0.801 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.229 0.771 33 H 0.091 0.909 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.279 6.614 -2.749 17.785 hybrid contribution 0.770 -0.884 0.466 1.262 sum -15.509 5.729 -2.283 16.690 Atomic orbital electron populations 1.23477 0.75566 1.05891 1.03060 1.86102 1.24287 1.26246 1.88715 1.18718 0.90593 0.85919 0.97090 1.21408 1.01929 0.89258 1.05948 1.20199 0.87145 1.00071 0.98940 1.19826 0.92866 0.83386 1.08686 1.83735 1.14182 1.33655 1.76257 1.23069 0.84629 0.92257 0.96080 1.20662 0.88809 0.98425 1.05554 1.20777 0.92782 0.94431 1.17027 1.17161 0.84690 0.84519 0.83874 1.90582 1.66437 1.62368 1.32745 1.41897 1.25479 1.43889 1.06797 1.19804 1.04788 1.27859 0.94574 0.89821 1.26194 1.02227 0.98765 0.93634 1.69701 1.41994 1.45509 0.98233 0.84780 0.76807 0.77625 0.78540 1.19543 1.18903 1.19490 1.19445 0.91519 0.94532 1.03083 1.19569 0.93060 0.96015 1.08256 0.90730 0.90660 0.86577 0.79463 0.80125 0.87627 0.86201 0.90230 0.77147 0.90878 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -9.34 10.49 -93.08 -0.98 -10.32 16 3 C 0.12 3.72 6.68 22.50 0.15 3.87 16 4 C -0.17 -3.62 9.01 22.38 0.20 -3.42 16 5 C -0.05 -1.05 10.06 22.34 0.22 -0.83 16 6 C 0.00 -0.05 7.39 22.93 0.17 0.12 16 7 O -0.18 -5.87 10.53 -4.66 -0.05 -5.92 16 8 C 0.09 3.32 7.30 25.20 0.18 3.50 16 9 C -0.08 -2.25 10.20 71.24 0.73 -1.53 16 10 C -0.25 -11.23 6.06 -18.98 -0.11 -11.35 16 11 C 0.51 28.07 7.15 86.53 0.62 28.69 16 12 O -0.63 -39.48 16.68 -4.30 -0.07 -39.55 16 13 N -0.55 -30.87 5.28 -310.35 -1.64 -32.50 16 14 C -0.34 -20.23 9.68 84.07 0.81 -19.42 16 15 H 0.08 5.25 7.15 -2.91 -0.02 5.22 16 16 C -0.01 -0.40 5.50 84.93 0.47 0.06 16 17 N -0.91 -50.66 13.05 21.67 0.28 -50.38 16 18 Si 1.00 43.42 29.55 68.60 2.03 45.44 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 22 C -0.08 -3.49 6.38 -20.10 -0.13 -3.62 16 23 C -0.15 -6.02 10.03 22.49 0.23 -5.80 16 24 H 0.07 0.78 7.66 -2.39 -0.02 0.77 16 25 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 26 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.19 2.16 6.27 -2.91 -0.02 2.15 16 28 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.08 2.62 7.87 -2.39 -0.02 2.60 16 32 H 0.39 21.76 7.88 -92.71 -0.73 21.03 16 33 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -78.46 305.48 4.65 -73.82 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.42 Total: 27.81 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 4.65 Total: -8.40 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -1.35 Total: -82.88 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -1.10 Total: -55.79 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -78.46 4.65 -73.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069452783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.301 kcal (2) G-P(sol) polarization free energy of solvation -78.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds