Wall clock time and date at job start Mon Mar 30 2020 02:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47323 * 2 1 4 4 H 1.08998 * 109.46979 * 54.99725 * 3 2 1 5 5 C 1.50702 * 109.47069 * 174.99669 * 3 2 1 6 6 H 1.07991 * 119.99596 * 120.00155 * 5 3 2 7 7 C 1.37873 * 119.99737 * 300.00143 * 5 3 2 8 8 N 1.31513 * 120.00495 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99648 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47011 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47110 * 119.99666 * 9 7 5 12 12 H 1.48502 * 109.47173 * 240.00163 * 9 7 5 13 13 N 1.46494 * 109.47199 * 294.99777 * 3 2 1 14 14 C 1.34786 * 120.00154 * 84.99712 * 13 3 2 15 15 O 1.21277 * 119.99560 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00062 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.64487 * 300.70334 * 16 14 13 18 18 C 1.53878 * 109.64637 * 180.27545 * 16 14 13 19 19 C 1.55046 * 106.62439 * 193.10209 * 18 16 14 20 20 S 1.83288 * 102.56663 * 42.42992 * 19 18 16 21 21 O 1.42105 * 109.34950 * 90.18815 * 20 19 18 22 22 O 1.42100 * 109.35065 * 223.38897 * 20 19 18 23 23 C 1.54163 * 109.53739 * 61.06650 * 16 14 13 24 24 H 1.08999 * 109.47392 * 300.00646 * 1 2 3 25 25 H 1.09005 * 109.46675 * 60.00276 * 1 2 3 26 26 H 1.08992 * 109.47541 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47085 * 239.99669 * 2 1 3 28 28 H 1.08998 * 109.46737 * 120.00060 * 2 1 3 29 29 H 0.96995 * 120.00030 * 180.02562 * 8 7 5 30 30 H 0.97002 * 120.00179 * 265.00269 * 13 3 2 31 31 H 1.09002 * 110.02320 * 312.39046 * 18 16 14 32 32 H 1.08997 * 110.02674 * 73.80253 * 18 16 14 33 33 H 1.08998 * 110.78854 * 160.70737 * 19 18 16 34 34 H 1.09004 * 110.78736 * 284.16619 * 19 18 16 35 35 H 1.08998 * 110.31975 * 266.60114 * 23 16 14 36 36 H 1.08997 * 110.31711 * 28.79276 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3365 2.1729 9 14 6.0049 0.8811 1.3820 10 1 6.5987 1.5461 0.1944 11 1 6.3989 1.6166 2.6104 12 1 6.4970 -0.5177 1.4631 13 7 1.6526 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3392 2.6327 -0.4342 16 6 0.0369 3.3387 -2.6545 17 1 0.7340 4.1469 -2.8759 18 6 -1.3875 3.9057 -2.5224 19 6 -1.8524 4.2753 -3.9546 20 16 -1.2691 2.8471 -4.9443 21 8 -2.2865 1.8558 -4.9854 22 8 -0.6871 3.3175 -6.1522 23 6 0.0549 2.3097 -3.8024 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8291 -0.0613 2.9499 30 1 2.2721 2.1231 -1.9978 31 1 -2.0511 3.1526 -2.0973 32 1 -1.3784 4.7946 -1.8917 33 1 -2.9382 4.3595 -3.9993 34 1 -1.3777 5.1976 -4.2895 35 1 1.0202 2.3241 -4.3085 36 1 -0.1576 1.3117 -3.4194 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086023282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:36 Heat of formation + Delta-G solvation = -118.825259 kcal Electronic energy + Delta-G solvation = -20073.548436 eV Core-core repulsion = 16877.699780 eV Total energy + Delta-G solvation = -3195.848656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.60600 -37.17766 -36.28204 -35.98466 -34.91211 -32.52369 -31.17426 -30.01826 -27.08654 -25.78845 -23.34103 -22.24544 -20.07461 -19.42627 -18.97702 -17.60486 -17.06033 -16.45739 -15.81313 -15.76832 -15.29487 -14.90040 -14.44362 -14.14677 -13.82191 -13.50394 -12.81217 -12.59487 -12.50354 -12.30554 -12.16224 -12.10915 -11.87995 -11.55510 -11.35541 -11.28632 -11.02136 -10.95257 -10.88776 -10.50920 -10.37161 -10.25107 -9.70964 -9.14165 -9.09409 -8.57705 -7.94819 -6.19524 -4.29431 -0.12282 2.33124 3.09682 3.18833 3.27225 3.29167 3.45995 3.69555 3.97216 4.25840 4.35376 4.41075 4.53985 4.66224 4.81476 5.12248 5.22549 5.30874 5.43091 5.58119 5.76461 5.92514 6.32390 6.37407 6.57779 6.95234 7.11067 7.26793 7.33500 7.53403 7.63891 7.81212 8.10216 8.53352 8.68266 8.98270 9.38248 10.85763 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.031430 B = 0.004564 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.642943 B = 6133.318264 C = 6388.431980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.703 5.703 14 C 0.511 3.489 15 O -0.541 6.541 16 C -0.107 4.107 17 H 0.113 0.887 18 C -0.101 4.101 19 C -0.586 4.586 20 S 2.390 3.610 21 O -0.936 6.936 22 O -0.942 6.942 23 C -0.587 4.587 24 H 0.050 0.950 25 H 0.037 0.963 26 H 0.024 0.976 27 H 0.031 0.969 28 H 0.100 0.900 29 H 0.264 0.736 30 H 0.389 0.611 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 6.367 -11.066 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.350 5.350 14 C 0.294 3.706 15 O -0.420 6.420 16 C -0.130 4.130 17 H 0.131 0.869 18 C -0.139 4.139 19 C -0.716 4.716 20 S 2.573 3.427 21 O -0.933 6.933 22 O -0.939 6.939 23 C -0.716 4.716 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.543 5.852 -11.076 14.622 hybrid contribution 1.681 0.244 0.516 1.775 sum -5.862 6.096 -10.560 13.529 Atomic orbital electron populations 1.21858 0.98333 0.98243 1.01185 1.21947 0.92611 0.99764 1.02419 1.18837 0.94338 0.89238 0.80866 0.93179 1.21248 0.90635 1.39165 1.06360 0.92029 1.24884 0.98657 0.94723 0.95367 1.69895 1.35115 1.37507 1.09341 0.86401 0.84777 0.77827 0.78131 1.19759 1.20857 1.20845 1.46502 1.14370 1.55468 1.18644 1.19836 0.83126 0.79673 0.88015 1.90698 1.51375 1.59823 1.40115 1.21798 0.99603 0.97467 0.94141 0.86851 1.22044 0.94301 1.04020 0.93573 1.30629 1.11951 1.18609 1.10418 1.09078 0.77888 0.78474 0.77243 1.93628 1.55647 1.57010 1.87024 1.93606 1.77902 1.81025 1.41409 1.30568 1.19289 1.09386 1.12383 0.93055 0.94368 0.95689 0.94981 0.88199 0.92545 0.77826 0.88249 0.87892 0.84334 0.84465 0.83614 0.83832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.52 37.16 0.32 -2.63 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.35 2.24 -69.08 -0.15 6.20 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.49 8.73 -34.44 -0.30 -13.79 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.32 16 9 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.70 -13.03 4.94 -54.93 -0.27 -13.30 16 14 C 0.51 8.66 5.56 -10.98 -0.06 8.60 16 15 O -0.54 -11.12 12.94 5.56 0.07 -11.05 16 16 C -0.11 -1.19 2.95 -90.71 -0.27 -1.46 16 17 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 18 C -0.10 -0.99 5.27 -25.19 -0.13 -1.13 16 19 C -0.59 -4.25 7.31 38.24 0.28 -3.97 16 20 S 2.39 23.23 6.11 -107.50 -0.66 22.57 16 21 O -0.94 -12.71 18.15 -57.71 -1.05 -13.76 16 22 O -0.94 -11.82 18.15 -57.71 -1.05 -12.87 16 23 C -0.59 -5.64 6.61 37.77 0.25 -5.39 16 24 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 25 H 0.04 0.76 5.65 -51.93 -0.29 0.47 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.10 2.59 5.95 -51.93 -0.31 2.29 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 30 H 0.39 6.17 8.48 -40.82 -0.35 5.82 16 31 H 0.10 1.11 7.71 -51.93 -0.40 0.71 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.15 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.14 1.51 7.87 -51.93 -0.41 1.10 16 LS Contribution 304.47 15.07 4.59 4.59 Total: -1.00 -33.92 304.47 -8.13 -42.05 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.06 Total: 5.17 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -0.31 Total: -15.05 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.35 Total: -36.62 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -2.02 Total: -37.68 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 23.23 SS G_CDS: -0.66 Total: 22.57 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.92 -8.13 -42.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086023282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.778 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds