Wall clock time and date at job start Mon Mar 30 2020 02:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47323 * 2 1 4 4 H 1.08998 * 109.46979 * 54.99725 * 3 2 1 5 5 C 1.50702 * 109.47069 * 174.99669 * 3 2 1 6 6 H 1.07991 * 119.99596 * 120.00155 * 5 3 2 7 7 C 1.37873 * 119.99737 * 300.00143 * 5 3 2 8 8 N 1.31513 * 120.00495 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99648 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47011 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47110 * 119.99666 * 9 7 5 12 12 H 1.48502 * 109.47173 * 240.00163 * 9 7 5 13 13 N 1.46494 * 109.47199 * 294.99777 * 3 2 1 14 14 C 1.34786 * 120.00154 * 84.99712 * 13 3 2 15 15 O 1.21277 * 119.99560 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00062 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.64487 * 300.70334 * 16 14 13 18 18 C 1.53878 * 109.64637 * 180.27545 * 16 14 13 19 19 C 1.55046 * 106.62439 * 193.10209 * 18 16 14 20 20 S 1.83288 * 102.56663 * 42.42992 * 19 18 16 21 21 O 1.42105 * 109.34950 * 90.18815 * 20 19 18 22 22 O 1.42100 * 109.35065 * 223.38897 * 20 19 18 23 23 C 1.54163 * 109.53739 * 61.06650 * 16 14 13 24 24 H 1.08999 * 109.47392 * 300.00646 * 1 2 3 25 25 H 1.09005 * 109.46675 * 60.00276 * 1 2 3 26 26 H 1.08992 * 109.47541 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47085 * 239.99669 * 2 1 3 28 28 H 1.08998 * 109.46737 * 120.00060 * 2 1 3 29 29 H 0.96995 * 120.00030 * 180.02562 * 8 7 5 30 30 H 0.97002 * 120.00179 * 265.00269 * 13 3 2 31 31 H 1.09002 * 110.02320 * 312.39046 * 18 16 14 32 32 H 1.08997 * 110.02674 * 73.80253 * 18 16 14 33 33 H 1.08998 * 110.78854 * 160.70737 * 19 18 16 34 34 H 1.09004 * 110.78736 * 284.16619 * 19 18 16 35 35 H 1.08998 * 110.31975 * 266.60114 * 23 16 14 36 36 H 1.08997 * 110.31711 * 28.79276 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3365 2.1729 9 14 6.0049 0.8811 1.3820 10 1 6.5987 1.5461 0.1944 11 1 6.3989 1.6166 2.6104 12 1 6.4970 -0.5177 1.4631 13 7 1.6526 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3392 2.6327 -0.4342 16 6 0.0369 3.3387 -2.6545 17 1 0.7340 4.1469 -2.8759 18 6 -1.3875 3.9057 -2.5224 19 6 -1.8524 4.2753 -3.9546 20 16 -1.2691 2.8471 -4.9443 21 8 -2.2865 1.8558 -4.9854 22 8 -0.6871 3.3175 -6.1522 23 6 0.0549 2.3097 -3.8024 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8291 -0.0613 2.9499 30 1 2.2721 2.1231 -1.9978 31 1 -2.0511 3.1526 -2.0973 32 1 -1.3784 4.7946 -1.8917 33 1 -2.9382 4.3595 -3.9993 34 1 -1.3777 5.1976 -4.2895 35 1 1.0202 2.3241 -4.3085 36 1 -0.1576 1.3117 -3.4194 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086023282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:32 Heat of formation + Delta-G solvation = -145.594216 kcal Electronic energy + Delta-G solvation = -20074.709225 eV Core-core repulsion = 16877.699780 eV Total energy + Delta-G solvation = -3197.009445 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -40.97451 -38.07182 -37.44050 -37.02589 -36.33181 -34.30043 -32.83562 -30.96564 -28.87326 -26.72754 -25.06347 -23.42889 -21.62586 -20.92775 -19.78307 -19.00302 -17.98682 -17.69269 -17.21364 -16.94715 -16.62566 -16.14840 -15.97366 -15.02786 -14.99304 -14.82158 -14.60606 -13.82289 -13.54504 -13.34840 -13.24052 -13.16800 -13.09769 -13.02173 -12.93785 -12.76367 -12.69531 -12.21542 -12.08852 -12.01960 -11.79531 -11.57318 -11.26822 -11.02622 -10.61102 -10.45595 -9.60455 -8.15940 -6.32804 -0.88925 1.43847 1.46015 1.55637 1.56652 1.85563 2.34982 2.56794 2.70130 3.12171 3.14625 3.46596 3.58303 3.71484 3.88625 4.08063 4.30733 4.49921 4.56525 4.60126 4.66084 4.76347 4.86751 4.99707 5.07860 5.16096 5.28123 5.44104 5.57481 5.64434 5.80923 5.93595 6.18524 6.76588 7.00730 7.35014 7.60427 8.89358 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.031430 B = 0.004564 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.642943 B = 6133.318264 C = 6388.431980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.001 0.999 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.703 5.703 14 C 0.505 3.495 15 O -0.581 6.581 16 C -0.099 4.099 17 H 0.151 0.849 18 C -0.106 4.106 19 C -0.556 4.556 20 S 2.405 3.595 21 O -0.980 6.980 22 O -0.969 6.969 23 C -0.587 4.587 24 H 0.027 0.973 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.264 0.736 30 H 0.405 0.595 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.172 0.828 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 7.831 -12.921 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.173 3.827 4 H 0.019 0.981 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.351 5.351 14 C 0.291 3.709 15 O -0.462 6.462 16 C -0.121 4.121 17 H 0.169 0.831 18 C -0.146 4.146 19 C -0.688 4.688 20 S 2.592 3.408 21 O -0.977 6.977 22 O -0.966 6.966 23 C -0.716 4.716 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.240 0.760 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.177 0.823 34 H 0.188 0.812 35 H 0.190 0.810 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.946 7.309 -12.996 16.449 hybrid contribution 1.448 -0.163 1.143 1.852 sum -5.498 7.145 -11.853 14.892 Atomic orbital electron populations 1.21716 0.96979 0.99160 1.00531 1.21800 0.93754 0.99391 1.01248 1.18360 0.93542 0.89115 0.81693 0.98110 1.21622 0.91570 1.38631 1.06533 0.90926 1.25734 1.03024 0.94494 0.95170 1.70049 1.36913 1.38509 1.09918 0.85371 0.79509 0.77684 0.78197 1.18384 1.21139 1.20772 1.46252 1.15673 1.55756 1.17454 1.20810 0.81795 0.78675 0.89636 1.90686 1.52265 1.60977 1.42281 1.21837 1.01221 0.98214 0.90797 0.83098 1.22080 0.93202 1.03946 0.95324 1.30491 1.13489 1.17788 1.07020 1.08483 0.76917 0.78503 0.76876 1.93572 1.56975 1.59431 1.87752 1.93569 1.78326 1.81378 1.43360 1.30580 1.20841 1.08424 1.11757 0.95380 0.93279 0.93894 0.94082 0.91247 0.92702 0.76003 0.90009 0.86923 0.82331 0.81170 0.81011 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 8.52 71.98 0.61 -4.84 16 2 C -0.12 -5.81 5.45 30.60 0.17 -5.64 16 3 C 0.28 13.32 2.24 44.25 0.10 13.42 16 4 H 0.00 0.06 7.58 -2.39 -0.02 0.04 16 5 C -0.55 -27.46 8.73 25.60 0.22 -27.23 16 6 H 0.07 3.41 7.74 -2.92 -0.02 3.38 16 7 C 0.02 0.83 5.29 84.65 0.45 1.27 16 8 N -0.92 -51.12 11.29 21.45 0.24 -50.88 16 9 Si 0.97 40.87 29.54 68.60 2.03 42.90 16 10 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 11 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.70 -25.55 4.94 -446.10 -2.20 -27.75 16 14 C 0.51 16.66 5.56 87.65 0.49 17.15 16 15 O -0.58 -24.14 12.94 -3.02 -0.04 -24.17 16 16 C -0.10 -1.91 2.95 -10.85 -0.03 -1.94 16 17 H 0.15 1.87 8.14 -2.39 -0.02 1.85 16 18 C -0.11 -1.81 5.27 31.59 0.17 -1.64 16 19 C -0.56 -5.85 7.31 72.68 0.53 -5.32 16 20 S 2.41 41.38 6.11 -56.49 -0.34 41.03 16 21 O -0.98 -25.75 18.15 -127.49 -2.31 -28.06 16 22 O -0.97 -22.01 18.15 -127.49 -2.31 -24.33 16 23 C -0.59 -9.82 6.61 72.38 0.48 -9.35 16 24 H 0.03 1.30 7.85 -2.39 -0.02 1.28 16 25 H 0.05 1.97 5.65 -2.38 -0.01 1.96 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 3.73 5.95 -2.39 -0.01 3.72 16 29 H 0.26 14.01 8.31 -92.71 -0.77 13.23 16 30 H 0.40 12.06 8.48 -92.71 -0.79 11.28 16 31 H 0.08 1.72 7.71 -2.39 -0.02 1.70 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 33 H 0.16 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.17 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.17 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.13 2.61 7.87 -2.39 -0.02 2.59 16 Total: -1.00 -75.93 304.47 -1.46 -77.39 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.30 Total: 18.00 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 3.18 Total: -24.12 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.96 Total: -78.63 kcal Atomic # 8 Polarization: -71.89 SS G_CDS: -4.67 Total: -76.56 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 41.38 SS G_CDS: -0.34 Total: 41.03 kcal Total: -75.93 -1.46 -77.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086023282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.209 kcal (2) G-P(sol) polarization free energy of solvation -75.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds