Wall clock time and date at job start Mon Mar 30 2020 01:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47121 * 2 1 4 4 C 1.50701 * 109.47164 * 120.00815 * 2 1 3 5 5 H 1.07997 * 120.00076 * 119.99723 * 4 2 1 6 6 C 1.37876 * 119.99754 * 299.99940 * 4 2 1 7 7 N 1.31513 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99980 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46646 * 59.99633 * 8 6 4 10 10 H 1.48499 * 109.47209 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46746 * 299.99924 * 8 6 4 12 12 N 1.46503 * 109.46563 * 240.00530 * 2 1 3 13 13 C 1.38292 * 120.00169 * 85.00502 * 12 2 1 14 14 N 1.31420 * 127.38961 * 180.25512 * 13 12 2 15 15 C 1.32045 * 116.78006 * 180.18669 * 14 13 12 16 16 C 1.48368 * 121.24857 * 179.79479 * 15 14 13 17 17 C 1.39347 * 120.12445 * 179.74292 * 16 15 14 18 18 C 1.38015 * 119.87698 * 179.97438 * 17 16 15 19 19 C 1.38324 * 120.12093 * 0.02562 * 18 17 16 20 20 C 1.38324 * 120.24646 * 0.02562 * 19 18 17 21 21 C 1.38014 * 120.12666 * 359.97438 * 20 19 18 22 22 N 1.30902 * 117.50378 * 359.52042 * 15 14 13 23 23 S 1.69918 * 105.77263 * 0.25208 * 22 15 14 24 24 H 1.09001 * 109.47164 * 59.99488 * 1 2 3 25 25 H 1.09004 * 109.47348 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47024 * 299.99611 * 1 2 3 27 27 H 0.97001 * 120.00188 * 180.02562 * 7 6 4 28 28 H 0.97002 * 119.99977 * 264.99714 * 12 2 1 29 29 H 1.08005 * 120.05996 * 0.25407 * 17 16 15 30 30 H 1.08001 * 119.93401 * 179.97438 * 18 17 16 31 31 H 1.07996 * 119.87512 * 179.97438 * 19 18 17 32 32 H 1.08004 * 119.93155 * 179.97438 * 20 19 18 33 33 H 1.07997 * 120.06008 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2397 2.4827 7 7 0.9436 0.8299 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.8075 -1.1194 4.0075 10 1 1.8279 -0.4198 5.2204 11 1 1.8280 -2.5202 4.0078 12 7 2.0182 -0.6905 -1.1963 13 6 2.1503 -0.0005 -2.3875 14 7 2.5664 -0.4726 -3.5412 15 6 2.6149 0.3785 -4.5497 16 6 3.0737 -0.0474 -5.8948 17 6 3.1105 0.8692 -6.9438 18 6 3.5388 0.4677 -8.1929 19 6 3.9305 -0.8420 -8.4046 20 6 3.8949 -1.7562 -7.3672 21 6 3.4685 -1.3658 -6.1140 22 7 2.2377 1.6106 -4.3194 23 16 1.7984 1.6603 -2.6788 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7095 1.1614 3.4845 28 1 2.2489 -1.6317 -1.1528 29 1 2.8088 1.8930 -6.7785 30 1 3.5672 1.1771 -9.0066 31 1 4.2645 -1.1520 -9.3837 32 1 4.2015 -2.7776 -7.5383 33 1 3.4408 -2.0806 -5.3050 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:51 Heat of formation + Delta-G solvation = 72.850340 kcal Electronic energy + Delta-G solvation = -17642.266817 eV Core-core repulsion = 14794.331509 eV Total energy + Delta-G solvation = -2847.935308 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.079 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.94033 -38.45699 -36.44687 -33.25123 -31.62266 -31.02880 -30.31854 -28.73835 -25.59695 -24.76964 -22.62765 -22.05892 -21.12900 -19.87054 -18.04656 -16.97699 -16.82394 -15.92805 -15.33570 -15.10589 -14.91489 -14.51409 -13.91621 -13.67758 -13.38008 -12.95474 -12.79855 -12.31828 -11.71205 -11.52773 -11.24837 -11.23916 -11.06145 -10.99620 -10.91931 -10.64856 -10.42660 -10.34425 -9.45930 -9.34235 -9.10999 -8.93953 -8.75936 -8.43717 -7.39122 -6.36664 -4.47598 0.79985 1.41974 1.59647 1.66128 2.30908 3.14983 3.18943 3.20610 3.21295 3.48071 4.00400 4.17915 4.61464 4.92295 4.95449 4.97151 5.12331 5.45265 5.50146 5.72100 5.95916 6.05320 6.16460 6.36722 6.46950 6.49902 6.59629 6.64440 6.67812 6.94004 6.96257 7.35740 7.44225 7.57202 7.81219 8.09892 8.28288 8.58302 9.20742 10.69508 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.038734 B = 0.003761 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.709706 B = 7443.575387 C = 7933.871467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.540 4.540 5 H 0.067 0.933 6 C 0.071 3.929 7 N -0.882 5.882 8 Si 0.908 3.092 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.634 5.634 13 C 0.356 3.644 14 N -0.605 5.605 15 C 0.341 3.659 16 C -0.015 4.015 17 C -0.080 4.080 18 C -0.130 4.130 19 C -0.110 4.110 20 C -0.131 4.131 21 C -0.073 4.073 22 N -0.524 5.524 23 S 0.182 5.818 24 H 0.017 0.983 25 H 0.037 0.963 26 H 0.100 0.900 27 H 0.270 0.730 28 H 0.408 0.592 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.081 -2.145 -14.621 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.579 4.579 5 H 0.085 0.915 6 C -0.133 4.133 7 N -0.518 5.518 8 Si 0.735 3.265 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.267 5.267 13 C -0.024 4.024 14 N -0.344 5.344 15 C 0.054 3.946 16 C -0.020 4.020 17 C -0.100 4.100 18 C -0.148 4.148 19 C -0.129 4.129 20 C -0.149 4.149 21 C -0.093 4.093 22 N -0.359 5.359 23 S 0.317 5.683 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.119 0.881 27 H 0.080 0.920 28 H 0.245 0.755 29 H 0.151 0.849 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.603 -0.683 -14.310 14.561 hybrid contribution 0.623 -1.735 0.819 2.017 sum 3.226 -2.418 -13.491 14.080 Atomic orbital electron populations 1.22232 0.97367 1.00423 1.01494 1.19244 0.91750 0.93513 0.79359 0.93253 1.21015 1.33412 1.13911 0.89515 0.91483 1.24862 0.94427 0.94876 0.99178 1.69845 1.35192 1.22110 1.24665 0.86381 0.79311 0.79610 0.81175 1.19944 1.20906 1.19926 1.45256 1.63930 1.13019 1.04537 1.25223 0.91320 0.95791 0.90038 1.67374 1.33085 1.35680 0.98249 1.21177 0.94744 0.85154 0.93514 1.17845 1.01504 0.94144 0.88469 1.21279 0.97131 0.99791 0.91808 1.21057 1.00572 0.96345 0.96848 1.21254 0.99088 0.93594 0.98968 1.21102 1.01092 0.99811 0.92859 1.21346 0.95526 0.95084 0.97369 1.77475 1.30954 1.20655 1.06796 1.85040 1.66427 1.09973 1.06853 0.96388 0.94419 0.88113 0.92047 0.75492 0.84912 0.85744 0.86064 0.85718 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.27 37.16 0.34 -3.09 16 2 C 0.26 5.96 2.59 -69.08 -0.18 5.78 16 3 H 0.05 1.22 7.43 -51.93 -0.39 0.83 16 4 C -0.54 -13.25 8.73 -34.44 -0.30 -13.56 16 5 H 0.07 1.60 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -22.76 11.32 55.43 0.63 -22.13 16 8 Si 0.91 19.48 29.54 -169.99 -5.02 14.46 16 9 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 12 N -0.63 -12.77 5.21 -56.26 -0.29 -13.07 16 13 C 0.36 7.12 8.52 -86.56 -0.74 6.39 16 14 N -0.61 -11.77 9.87 -14.52 -0.14 -11.92 16 15 C 0.34 6.38 7.44 -158.84 -1.18 5.19 16 16 C -0.01 -0.23 5.88 -104.90 -0.62 -0.85 16 17 C -0.08 -1.08 9.60 -39.25 -0.38 -1.45 16 18 C -0.13 -1.40 10.03 -39.63 -0.40 -1.80 16 19 C -0.11 -1.09 10.04 -39.52 -0.40 -1.49 16 20 C -0.13 -1.42 10.03 -39.63 -0.40 -1.82 16 21 C -0.07 -1.00 9.60 -39.25 -0.38 -1.37 16 22 N -0.52 -10.06 11.42 29.63 0.34 -9.72 16 23 S 0.18 3.53 22.69 -107.50 -2.44 1.09 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.10 2.42 6.07 -51.93 -0.32 2.10 16 27 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.41 7.65 8.66 -40.82 -0.35 7.29 16 29 H 0.13 1.80 7.62 -52.48 -0.40 1.40 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 33 H 0.14 1.90 7.62 -52.49 -0.40 1.50 16 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -26.51 302.30 -10.60 -37.10 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.51 Total: 6.03 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -4.71 Total: -6.40 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.53 Total: -56.84 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -2.44 Total: 1.09 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.51 -10.60 -37.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.953 kcal (2) G-P(sol) polarization free energy of solvation -26.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds