Wall clock time and date at job start Mon Mar 30 2020 01:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47121 * 2 1 4 4 C 1.50701 * 109.47164 * 120.00815 * 2 1 3 5 5 H 1.07997 * 120.00076 * 119.99723 * 4 2 1 6 6 C 1.37876 * 119.99754 * 299.99940 * 4 2 1 7 7 N 1.31513 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99980 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46646 * 59.99633 * 8 6 4 10 10 H 1.48499 * 109.47209 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46746 * 299.99924 * 8 6 4 12 12 N 1.46503 * 109.46563 * 240.00530 * 2 1 3 13 13 C 1.38292 * 120.00169 * 85.00502 * 12 2 1 14 14 N 1.31420 * 127.38961 * 180.25512 * 13 12 2 15 15 C 1.32045 * 116.78006 * 180.18669 * 14 13 12 16 16 C 1.48368 * 121.24857 * 179.79479 * 15 14 13 17 17 C 1.39347 * 120.12445 * 179.74292 * 16 15 14 18 18 C 1.38015 * 119.87698 * 179.97438 * 17 16 15 19 19 C 1.38324 * 120.12093 * 0.02562 * 18 17 16 20 20 C 1.38324 * 120.24646 * 0.02562 * 19 18 17 21 21 C 1.38014 * 120.12666 * 359.97438 * 20 19 18 22 22 N 1.30902 * 117.50378 * 359.52042 * 15 14 13 23 23 S 1.69918 * 105.77263 * 0.25208 * 22 15 14 24 24 H 1.09001 * 109.47164 * 59.99488 * 1 2 3 25 25 H 1.09004 * 109.47348 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47024 * 299.99611 * 1 2 3 27 27 H 0.97001 * 120.00188 * 180.02562 * 7 6 4 28 28 H 0.97002 * 119.99977 * 264.99714 * 12 2 1 29 29 H 1.08005 * 120.05996 * 0.25407 * 17 16 15 30 30 H 1.08001 * 119.93401 * 179.97438 * 18 17 16 31 31 H 1.07996 * 119.87512 * 179.97438 * 19 18 17 32 32 H 1.08004 * 119.93155 * 179.97438 * 20 19 18 33 33 H 1.07997 * 120.06008 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2397 2.4827 7 7 0.9436 0.8299 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.8075 -1.1194 4.0075 10 1 1.8279 -0.4198 5.2204 11 1 1.8280 -2.5202 4.0078 12 7 2.0182 -0.6905 -1.1963 13 6 2.1503 -0.0005 -2.3875 14 7 2.5664 -0.4726 -3.5412 15 6 2.6149 0.3785 -4.5497 16 6 3.0737 -0.0474 -5.8948 17 6 3.1105 0.8692 -6.9438 18 6 3.5388 0.4677 -8.1929 19 6 3.9305 -0.8420 -8.4046 20 6 3.8949 -1.7562 -7.3672 21 6 3.4685 -1.3658 -6.1140 22 7 2.2377 1.6106 -4.3194 23 16 1.7984 1.6603 -2.6788 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7095 1.1614 3.4845 28 1 2.2489 -1.6317 -1.1528 29 1 2.8088 1.8930 -6.7785 30 1 3.5672 1.1771 -9.0066 31 1 4.2645 -1.1520 -9.3837 32 1 4.2015 -2.7776 -7.5383 33 1 3.4408 -2.0806 -5.3050 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097096918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:51 Heat of formation + Delta-G solvation = 59.682586 kcal Electronic energy + Delta-G solvation = -17642.837814 eV Core-core repulsion = 14794.331509 eV Total energy + Delta-G solvation = -2848.506304 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.079 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29835 -39.56975 -38.11114 -35.00459 -33.07080 -32.00583 -31.52042 -30.43432 -27.46191 -26.12968 -23.78462 -23.18627 -22.85613 -21.20046 -19.56657 -18.71639 -17.94391 -17.46342 -16.96203 -16.45342 -16.32703 -15.58987 -15.47280 -14.78053 -14.66141 -14.30625 -14.27896 -13.68761 -13.22412 -13.08428 -12.97505 -12.79098 -12.57302 -12.40243 -12.21793 -12.16799 -12.01646 -11.92378 -11.24673 -10.76436 -10.67331 -10.60149 -9.86182 -9.69782 -8.95525 -8.25961 -6.43025 -0.48320 0.04156 0.37526 0.49980 0.81881 1.45979 1.46135 1.54003 1.85349 1.89837 2.40326 2.96930 3.06113 3.23717 4.00198 4.13541 4.21780 4.37489 4.50065 4.56683 4.67598 4.73686 4.83318 4.88600 5.00742 5.16438 5.19073 5.49470 5.54914 5.55509 5.59060 5.64327 5.83570 5.98617 6.04780 6.41413 6.60835 6.82877 7.28712 8.79755 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.038734 B = 0.003761 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.709706 B = 7443.575387 C = 7933.871467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.271 3.729 3 H 0.027 0.973 4 C -0.555 4.555 5 H 0.071 0.929 6 C 0.028 3.972 7 N -0.907 5.907 8 Si 0.969 3.031 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.633 5.633 13 C 0.350 3.650 14 N -0.607 5.607 15 C 0.338 3.662 16 C -0.052 4.052 17 C -0.090 4.090 18 C -0.125 4.125 19 C -0.095 4.095 20 C -0.127 4.127 21 C -0.084 4.084 22 N -0.532 5.532 23 S 0.169 5.831 24 H 0.027 0.973 25 H 0.040 0.960 26 H 0.081 0.919 27 H 0.270 0.730 28 H 0.414 0.586 29 H 0.124 0.876 30 H 0.156 0.844 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 -3.411 -16.695 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.169 3.831 3 H 0.045 0.955 4 C -0.593 4.593 5 H 0.089 0.911 6 C -0.174 4.174 7 N -0.545 5.545 8 Si 0.794 3.206 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.192 1.192 12 N -0.267 5.267 13 C -0.031 4.031 14 N -0.345 5.345 15 C 0.052 3.948 16 C -0.057 4.057 17 C -0.111 4.111 18 C -0.143 4.143 19 C -0.114 4.114 20 C -0.144 4.144 21 C -0.105 4.105 22 N -0.367 5.367 23 S 0.304 5.696 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.252 0.748 29 H 0.142 0.858 30 H 0.173 0.827 31 H 0.179 0.821 32 H 0.172 0.828 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.613 -1.956 -16.416 16.922 hybrid contribution 0.366 -1.353 1.258 1.883 sum 3.979 -3.308 -15.158 16.017 Atomic orbital electron populations 1.22068 0.96989 1.00406 1.00950 1.18958 0.91940 0.92392 0.79845 0.95516 1.21333 1.33501 1.14149 0.90355 0.91102 1.25615 0.94570 0.95477 1.01779 1.69957 1.36078 1.23218 1.25210 0.85435 0.78636 0.78713 0.77845 1.19799 1.20811 1.19247 1.44938 1.64560 1.13154 1.04084 1.25317 0.91558 0.95991 0.90187 1.67434 1.32941 1.35979 0.98195 1.21815 0.93645 0.84757 0.94616 1.18022 1.04442 0.95710 0.87543 1.21353 0.97867 0.99185 0.92670 1.21433 0.99030 0.97577 0.96256 1.21749 0.96627 0.92709 1.00268 1.21460 0.99743 1.01535 0.91696 1.21393 0.96358 0.94112 0.98657 1.77520 1.31892 1.21118 1.06154 1.85010 1.66871 1.10045 1.07662 0.95437 0.94054 0.90057 0.92034 0.74757 0.85754 0.82661 0.82089 0.82791 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.49 9.27 71.98 0.67 -5.82 16 2 C 0.27 12.53 2.59 44.25 0.11 12.64 16 3 H 0.03 1.37 7.43 -2.39 -0.02 1.35 16 4 C -0.56 -27.39 8.73 25.60 0.22 -27.16 16 5 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 6 C 0.03 1.37 5.30 84.65 0.45 1.82 16 7 N -0.91 -47.44 11.32 21.45 0.24 -47.19 16 8 Si 0.97 39.75 29.54 68.60 2.03 41.78 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 12 N -0.63 -25.88 5.21 -331.91 -1.73 -27.61 16 13 C 0.35 14.25 8.52 178.93 1.52 15.77 16 14 N -0.61 -23.99 9.87 -199.87 -1.97 -25.96 16 15 C 0.34 12.81 7.44 138.22 1.03 13.84 16 16 C -0.05 -1.62 5.88 -20.04 -0.12 -1.74 16 17 C -0.09 -2.34 9.60 22.48 0.22 -2.13 16 18 C -0.13 -2.28 10.03 22.24 0.22 -2.05 16 19 C -0.09 -1.46 10.04 22.31 0.22 -1.24 16 20 C -0.13 -2.34 10.03 22.24 0.22 -2.12 16 21 C -0.08 -2.23 9.60 22.49 0.22 -2.01 16 22 N -0.53 -20.87 11.42 -60.16 -0.69 -21.55 16 23 S 0.17 6.76 22.69 -56.49 -1.28 5.48 16 24 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.08 3.99 6.07 -2.39 -0.01 3.97 16 27 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 28 H 0.41 15.65 8.66 -92.71 -0.80 14.85 16 29 H 0.12 3.35 7.62 -2.91 -0.02 3.32 16 30 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 31 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 32 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.13 3.49 7.62 -2.91 -0.02 3.46 16 Total: -1.00 -57.39 302.30 1.93 -55.46 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.34 Total: 19.79 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 4.99 Total: -0.19 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -4.14 Total: -122.32 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Atomic # 16 Polarization: 6.76 SS G_CDS: -1.28 Total: 5.48 kcal Total: -57.39 1.93 -55.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.145 kcal (2) G-P(sol) polarization free energy of solvation -57.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds