Wall clock time and date at job start Mon Mar 30 2020 01:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47155 * 2 1 4 4 C 1.50707 * 109.46763 * 240.00217 * 2 1 3 5 5 H 1.07997 * 119.99732 * 239.99850 * 4 2 1 6 6 C 1.37872 * 119.99857 * 59.99960 * 4 2 1 7 7 N 1.31513 * 120.00440 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99971 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46554 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46882 * 119.99620 * 8 6 4 11 11 H 1.48492 * 109.47235 * 240.00213 * 8 6 4 12 12 N 1.46491 * 109.47293 * 120.00417 * 2 1 3 13 13 C 1.38289 * 119.99784 * 274.99772 * 12 2 1 14 14 N 1.31423 * 127.39092 * 179.97438 * 13 12 2 15 15 C 1.32044 * 116.78742 * 179.97438 * 14 13 12 16 16 C 1.48364 * 121.24760 * 179.97438 * 15 14 13 17 17 C 1.39354 * 120.12501 * 359.72894 * 16 15 14 18 18 C 1.38015 * 119.87227 * 179.69681 * 17 16 15 19 19 C 1.38320 * 120.12470 * 0.57402 * 18 17 16 20 20 C 1.38327 * 120.24741 * 359.72389 * 19 18 17 21 21 C 1.38016 * 120.12431 * 359.97438 * 20 19 18 22 22 N 1.30894 * 117.49812 * 0.02562 * 15 14 13 23 23 S 1.69918 * 105.77890 * 359.97438 * 22 15 14 24 24 H 1.08996 * 109.46848 * 299.99979 * 1 2 3 25 25 H 1.09000 * 109.47107 * 59.99535 * 1 2 3 26 26 H 1.08999 * 109.46735 * 179.97438 * 1 2 3 27 27 H 0.97003 * 120.00588 * 179.97438 * 7 6 4 28 28 H 0.96998 * 120.00196 * 94.99813 * 12 2 1 29 29 H 1.07995 * 120.06092 * 0.02562 * 17 16 15 30 30 H 1.08001 * 119.93336 * 180.32166 * 18 17 16 31 31 H 1.08002 * 119.87692 * 179.74003 * 19 18 17 32 32 H 1.07997 * 119.93826 * 179.97438 * 20 19 18 33 33 H 1.07997 * 120.06232 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 3.1472 -2.2862 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1857 -4.8162 12 7 2.0184 -0.6906 1.1960 13 6 2.1505 -0.0008 2.3873 14 7 2.5706 -0.4719 3.5400 15 6 2.6151 0.3779 4.5496 16 6 3.0732 -0.0484 5.8948 17 6 3.4621 -1.3683 6.1155 18 6 3.8933 -1.7577 7.3674 19 6 3.9286 -0.8436 8.4049 20 6 3.5378 0.4663 8.1931 21 6 3.1108 0.8683 6.9438 22 7 2.2389 1.6103 4.3192 23 16 1.8001 1.6604 2.6785 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7086 1.1614 -3.4844 28 1 2.2491 -1.6318 1.1524 29 1 3.4311 -2.0837 5.3071 30 1 4.1998 -2.7791 7.5382 31 1 4.2627 -1.1537 9.3840 32 1 3.5670 1.1757 9.0068 33 1 2.8063 1.8914 6.7794 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097096921.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:54 Heat of formation + Delta-G solvation = 59.613914 kcal Electronic energy + Delta-G solvation = -17642.981732 eV Core-core repulsion = 14794.472450 eV Total energy + Delta-G solvation = -2848.509282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.079 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29841 -39.56926 -38.11236 -35.00561 -33.07078 -32.00569 -31.52028 -30.43410 -27.46508 -26.13003 -23.78478 -23.18662 -22.85643 -21.20053 -19.56706 -18.71943 -17.94405 -17.46568 -16.96506 -16.45309 -16.32655 -15.58468 -15.46981 -14.78054 -14.66616 -14.31349 -14.27908 -13.69189 -13.22695 -13.08307 -12.99134 -12.77852 -12.57489 -12.40453 -12.21199 -12.16420 -12.01999 -11.92404 -11.22012 -10.76574 -10.67566 -10.61024 -9.86157 -9.69736 -8.95506 -8.26328 -6.43112 -0.48296 0.04172 0.37539 0.49985 0.81883 1.43292 1.46137 1.56296 1.85430 1.89994 2.40041 2.96936 3.05906 3.23747 4.00218 4.13558 4.21784 4.37505 4.50093 4.56696 4.67630 4.73728 4.83380 4.88587 5.00767 5.16465 5.19101 5.49802 5.54970 5.55558 5.59079 5.64359 5.83462 5.98708 6.04794 6.41488 6.61093 6.83006 7.28720 8.79782 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.038743 B = 0.003761 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.545641 B = 7443.909963 C = 7933.830041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.270 3.730 3 H 0.027 0.973 4 C -0.553 4.553 5 H 0.071 0.929 6 C 0.027 3.973 7 N -0.907 5.907 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.281 1.281 12 N -0.633 5.633 13 C 0.350 3.650 14 N -0.607 5.607 15 C 0.338 3.662 16 C -0.052 4.052 17 C -0.084 4.084 18 C -0.127 4.127 19 C -0.095 4.095 20 C -0.125 4.125 21 C -0.090 4.090 22 N -0.532 5.532 23 S 0.170 5.830 24 H 0.027 0.973 25 H 0.081 0.919 26 H 0.041 0.959 27 H 0.270 0.730 28 H 0.414 0.586 29 H 0.126 0.874 30 H 0.154 0.846 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 -3.412 16.724 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.168 3.832 3 H 0.045 0.955 4 C -0.591 4.591 5 H 0.089 0.911 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.207 1.207 12 N -0.267 5.267 13 C -0.030 4.030 14 N -0.346 5.346 15 C 0.052 3.948 16 C -0.057 4.057 17 C -0.105 4.105 18 C -0.144 4.144 19 C -0.114 4.114 20 C -0.143 4.143 21 C -0.111 4.111 22 N -0.367 5.367 23 S 0.304 5.696 24 H 0.046 0.954 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.252 0.748 29 H 0.144 0.856 30 H 0.172 0.828 31 H 0.179 0.821 32 H 0.173 0.827 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.617 -1.962 16.447 16.954 hybrid contribution 0.349 -1.338 -1.270 1.878 sum 3.967 -3.300 15.177 16.031 Atomic orbital electron populations 1.22066 0.96978 1.00422 1.00951 1.18970 0.91953 0.92405 0.79876 0.95501 1.21385 1.33333 1.14054 0.90325 0.91126 1.25615 0.94596 0.95489 1.01790 1.69968 1.36137 1.23289 1.25081 0.85328 0.78156 0.78512 0.78577 1.19012 1.20313 1.20689 1.44933 1.64557 1.13155 1.04084 1.25316 0.91529 0.95999 0.90203 1.67432 1.32846 1.36068 0.98218 1.21811 0.93639 0.84775 0.94602 1.18023 1.04476 0.95674 0.87544 1.21393 0.96368 0.94101 0.98657 1.21458 0.99706 1.01550 0.91718 1.21750 0.96631 0.92713 1.00259 1.21433 0.99052 0.97563 0.96248 1.21355 0.97862 0.99197 0.92660 1.77515 1.31941 1.21076 1.06153 1.85010 1.66911 1.09985 1.07676 0.95430 0.90064 0.94035 0.92056 0.74761 0.85637 0.82792 0.82088 0.82663 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.48 9.27 71.98 0.67 -5.82 16 2 C 0.27 12.48 2.59 44.25 0.11 12.60 16 3 H 0.03 1.38 7.43 -2.38 -0.02 1.36 16 4 C -0.55 -27.25 8.73 25.60 0.22 -27.03 16 5 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 6 C 0.03 1.34 5.30 84.65 0.45 1.79 16 7 N -0.91 -47.37 11.32 21.45 0.24 -47.13 16 8 Si 0.97 39.80 29.54 68.60 2.03 41.82 16 9 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 10 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 11 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 12 N -0.63 -25.87 5.21 -331.91 -1.73 -27.60 16 13 C 0.35 14.25 8.52 178.93 1.52 15.77 16 14 N -0.61 -23.99 9.87 -199.86 -1.97 -25.96 16 15 C 0.34 12.81 7.44 138.23 1.03 13.84 16 16 C -0.05 -1.62 5.88 -20.04 -0.12 -1.74 16 17 C -0.08 -2.23 9.60 22.49 0.22 -2.01 16 18 C -0.13 -2.34 10.03 22.24 0.22 -2.12 16 19 C -0.09 -1.46 10.04 22.31 0.22 -1.24 16 20 C -0.13 -2.28 10.03 22.24 0.22 -2.05 16 21 C -0.09 -2.34 9.60 22.49 0.22 -2.12 16 22 N -0.53 -20.86 11.41 -60.16 -0.69 -21.55 16 23 S 0.17 6.76 22.69 -56.49 -1.28 5.48 16 24 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 3.98 6.07 -2.39 -0.01 3.97 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.27 13.36 8.31 -92.71 -0.77 12.58 16 28 H 0.41 15.66 8.66 -92.71 -0.80 14.86 16 29 H 0.13 3.49 7.62 -2.91 -0.02 3.46 16 30 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 31 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 32 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.12 3.35 7.62 -2.91 -0.02 3.32 16 Total: -1.00 -57.42 302.30 1.93 -55.49 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.34 Total: 19.58 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 4.99 Total: -0.13 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -4.14 Total: -122.23 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Atomic # 16 Polarization: 6.76 SS G_CDS: -1.28 Total: 5.48 kcal Total: -57.42 1.93 -55.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096921.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.099 kcal (2) G-P(sol) polarization free energy of solvation -57.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds