Wall clock time and date at job start Mon Mar 30 2020 01:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86805 * 120.00104 * 2 1 4 4 H 1.48491 * 109.47451 * 240.00173 * 3 2 1 5 5 H 1.48502 * 109.46961 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46916 * 120.00152 * 3 2 1 7 7 C 1.40158 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00490 * 179.97438 * 7 2 1 9 9 C 1.41780 * 119.99910 * 359.97438 * 7 2 1 10 10 O 1.21663 * 119.99917 * 359.97438 * 9 7 2 11 11 O 1.34934 * 120.00345 * 180.02562 * 9 7 2 12 12 C 1.35858 * 117.99999 * 185.09563 * 11 9 7 13 13 C 1.38872 * 119.98946 * 75.18247 * 12 11 9 14 14 C 1.38009 * 120.00579 * 179.97438 * 13 12 11 15 15 C 1.38946 * 119.98872 * 0.02562 * 14 13 12 16 16 N 1.39948 * 120.00332 * 179.97438 * 15 14 13 17 17 C 1.46771 * 124.34908 * 174.18125 * 16 15 14 18 18 C 1.54476 * 105.47230 * 197.01910 * 17 16 15 19 19 C 1.54622 * 101.76605 * 334.58187 * 18 17 16 20 20 C 1.34421 * 124.35222 * 353.88644 * 16 15 14 21 21 O 1.21289 * 124.94185 * 359.56634 * 20 16 15 22 22 C 1.38938 * 119.98583 * 0.24840 * 15 14 13 23 23 C 1.38006 * 119.99101 * 359.51944 * 22 15 14 24 24 H 0.97006 * 119.99541 * 359.97438 * 1 2 3 25 25 H 1.07992 * 119.99735 * 359.97438 * 13 12 11 26 26 H 1.08003 * 120.00156 * 179.97438 * 14 13 12 27 27 H 1.09001 * 110.24269 * 316.01981 * 17 16 15 28 28 H 1.08994 * 110.24309 * 77.92793 * 17 16 15 29 29 H 1.09005 * 110.97078 * 92.70521 * 18 17 16 30 30 H 1.09000 * 110.96989 * 216.45917 * 18 17 16 31 31 H 1.09002 * 110.48533 * 143.47810 * 19 18 17 32 32 H 1.08998 * 110.48906 * 265.98820 * 19 18 17 33 33 H 1.08001 * 120.00696 * 179.74811 * 22 15 14 34 34 H 1.08003 * 119.99299 * 180.23113 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6965 -1.2124 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0071 -1.2138 -0.0005 8 1 3.0870 -1.2139 -0.0010 9 6 1.2982 -2.4416 -0.0005 10 8 0.0815 -2.4416 0.0004 11 8 1.9728 -3.6103 -0.0005 12 6 1.2568 -4.7600 -0.1071 13 6 0.7202 -5.1325 -1.3325 14 6 -0.0067 -6.3006 -1.4413 15 6 -0.2019 -7.1036 -0.3243 16 7 -0.9393 -8.2880 -0.4341 17 6 -1.1015 -9.2659 0.6483 18 6 -1.5912 -10.5611 -0.0365 19 6 -2.2703 -10.0070 -1.3103 20 6 -1.5948 -8.6733 -1.5426 21 8 -1.6365 -8.0446 -2.5789 22 6 0.3304 -6.7277 0.9028 23 6 1.0612 -5.5619 1.0097 24 1 -0.4850 0.8401 0.0004 25 1 0.8716 -4.5080 -2.2005 26 1 -0.4244 -6.5900 -2.3943 27 1 -0.1472 -9.4397 1.1456 28 1 -1.8420 -8.9142 1.3665 29 1 -0.7522 -11.2086 -0.2919 30 1 -2.3102 -11.0867 0.5918 31 1 -2.1011 -10.6755 -2.1544 32 1 -3.3384 -9.8676 -1.1433 33 1 0.1755 -7.3496 1.7721 34 1 1.4782 -5.2715 1.9627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120760783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:00 Heat of formation + Delta-G solvation = -83.638651 kcal Electronic energy + Delta-G solvation = -20357.156855 eV Core-core repulsion = 17027.390053 eV Total energy + Delta-G solvation = -3329.766802 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99979 -39.34911 -37.42912 -36.56926 -34.90395 -32.72510 -32.53966 -30.58949 -28.39478 -27.86936 -26.84323 -23.30386 -22.91670 -21.41995 -20.68957 -19.56083 -17.59931 -17.48064 -16.93959 -16.46120 -15.82259 -15.37817 -14.89667 -14.28424 -14.20573 -14.00538 -13.73574 -13.64997 -13.34148 -12.99625 -12.80202 -12.59256 -12.30206 -11.81399 -11.78127 -11.43461 -11.32300 -11.24529 -10.92476 -10.66321 -10.36553 -9.91954 -9.64397 -9.34224 -8.95957 -8.53510 -8.20274 -7.35014 -6.53134 -5.06966 1.57223 1.83500 2.60122 2.80672 3.04699 3.08965 3.12512 3.87674 4.04130 4.10960 4.15613 4.22471 4.48203 4.70701 4.93278 5.16473 5.19897 5.21790 5.34906 5.36675 5.45346 5.49998 5.62500 5.78522 5.85302 5.92804 6.38309 6.44065 6.54294 6.81392 7.11342 7.16035 7.20787 7.27874 7.94262 8.03404 8.22851 8.66915 8.77677 10.24160 10.46195 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.045521 B = 0.003642 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.951021 B = 7685.688406 C = 7923.041763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.081 3.919 3 Si 0.928 3.072 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.505 4.505 8 H 0.082 0.918 9 C 0.480 3.520 10 O -0.553 6.553 11 O -0.339 6.339 12 C 0.120 3.880 13 C -0.108 4.108 14 C -0.136 4.136 15 C 0.130 3.870 16 N -0.554 5.554 17 C 0.095 3.905 18 C -0.130 4.130 19 C -0.153 4.153 20 C 0.510 3.490 21 O -0.513 6.513 22 C -0.140 4.140 23 C -0.113 4.113 24 H 0.278 0.722 25 H 0.127 0.873 26 H 0.152 0.848 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.888 -18.205 2.270 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.142 4.142 3 Si 0.751 3.249 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.537 4.537 8 H 0.100 0.900 9 C 0.342 3.658 10 O -0.447 6.447 11 O -0.259 6.259 12 C 0.076 3.924 13 C -0.127 4.127 14 C -0.156 4.156 15 C 0.038 3.962 16 N -0.279 5.279 17 C -0.028 4.028 18 C -0.168 4.168 19 C -0.193 4.193 20 C 0.299 3.701 21 O -0.389 6.389 22 C -0.161 4.161 23 C -0.132 4.132 24 H 0.089 0.911 25 H 0.145 0.855 26 H 0.169 0.831 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.481 -17.794 1.733 18.049 hybrid contribution 0.270 0.766 0.162 0.828 sum -2.211 -17.028 1.895 17.275 Atomic orbital electron populations 1.70020 1.07428 1.28618 1.31220 1.25883 0.94877 1.00984 0.92426 0.86074 0.79619 0.79130 0.80032 1.18696 1.20156 1.18714 1.19563 0.94972 0.87099 1.52023 0.89955 1.20072 0.86934 0.80983 0.77780 1.90731 1.14478 1.85043 1.54424 1.84663 1.40963 1.13287 1.87000 1.18686 0.93764 0.87674 0.92263 1.21323 0.97041 0.96368 0.97968 1.21353 1.00572 0.94608 0.99055 1.17644 0.96760 0.86800 0.94956 1.45696 1.48138 1.19852 1.14195 1.22230 1.02788 0.87819 0.89949 1.22609 1.01414 0.96477 0.96321 1.22327 1.01712 0.95013 1.00236 1.21032 0.78558 0.87805 0.82690 1.90650 1.60826 1.59325 1.28053 1.20453 1.01936 0.98374 0.95312 1.20984 0.99126 0.95004 0.98100 0.91146 0.85475 0.83079 0.89505 0.90220 0.89680 0.88762 0.87694 0.87513 0.85916 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.73 11.73 55.56 0.65 -21.08 16 2 C 0.08 2.22 5.50 -17.34 -0.10 2.12 16 3 Si 0.93 19.52 29.56 -169.99 -5.02 14.50 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.50 -14.53 9.46 -37.51 -0.35 -14.89 16 8 H 0.08 2.19 7.85 -52.49 -0.41 1.78 16 9 C 0.48 14.46 7.59 32.08 0.24 14.70 16 10 O -0.55 -18.22 14.62 -19.39 -0.28 -18.50 16 11 O -0.34 -9.07 9.95 -25.20 -0.25 -9.32 16 12 C 0.12 2.82 5.19 -39.11 -0.20 2.61 16 13 C -0.11 -2.40 9.72 -39.43 -0.38 -2.78 16 14 C -0.14 -2.71 9.28 -39.40 -0.37 -3.08 16 15 C 0.13 2.27 6.60 -83.63 -0.55 1.71 16 16 N -0.55 -7.58 3.14 -112.21 -0.35 -7.93 16 17 C 0.09 0.79 6.26 -3.12 -0.02 0.77 16 18 C -0.13 -0.72 7.18 -25.10 -0.18 -0.91 16 19 C -0.15 -1.22 6.86 -26.74 -0.18 -1.40 16 20 C 0.51 7.10 7.92 -10.86 -0.09 7.01 16 21 O -0.51 -9.26 14.82 5.55 0.08 -9.18 16 22 C -0.14 -2.32 9.40 -39.41 -0.37 -2.69 16 23 C -0.11 -2.23 9.98 -39.43 -0.39 -2.63 16 24 H 0.28 7.22 8.29 -40.82 -0.34 6.89 16 25 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 26 H 0.15 3.04 5.26 -52.48 -0.28 2.77 16 27 H 0.09 0.62 7.71 -51.93 -0.40 0.22 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.12 1.54 7.02 -52.49 -0.37 1.17 16 34 H 0.13 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 299.01 15.07 4.51 4.51 Total: -1.00 -36.63 299.01 -7.16 -43.80 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -3.55 Total: 2.64 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.94 Total: 0.56 kcal Atomic # 7 Polarization: -29.30 SS G_CDS: 0.30 Total: -29.00 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -0.45 Total: -37.00 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.63 -7.16 -43.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120760783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.840 kcal (2) G-P(sol) polarization free energy of solvation -36.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds