Wall clock time and date at job start Mon Mar 30 2020 01:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86805 * 120.00104 * 2 1 4 4 H 1.48491 * 109.47451 * 240.00173 * 3 2 1 5 5 H 1.48502 * 109.46961 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46916 * 120.00152 * 3 2 1 7 7 C 1.40158 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00490 * 179.97438 * 7 2 1 9 9 C 1.41780 * 119.99910 * 359.97438 * 7 2 1 10 10 O 1.21663 * 119.99917 * 359.97438 * 9 7 2 11 11 O 1.34934 * 120.00345 * 180.02562 * 9 7 2 12 12 C 1.35858 * 117.99999 * 185.09563 * 11 9 7 13 13 C 1.38872 * 119.98946 * 75.18247 * 12 11 9 14 14 C 1.38009 * 120.00579 * 179.97438 * 13 12 11 15 15 C 1.38946 * 119.98872 * 0.02562 * 14 13 12 16 16 N 1.39948 * 120.00332 * 179.97438 * 15 14 13 17 17 C 1.46771 * 124.34908 * 174.18125 * 16 15 14 18 18 C 1.54476 * 105.47230 * 197.01910 * 17 16 15 19 19 C 1.54622 * 101.76605 * 334.58187 * 18 17 16 20 20 C 1.34421 * 124.35222 * 353.88644 * 16 15 14 21 21 O 1.21289 * 124.94185 * 359.56634 * 20 16 15 22 22 C 1.38938 * 119.98583 * 0.24840 * 15 14 13 23 23 C 1.38006 * 119.99101 * 359.51944 * 22 15 14 24 24 H 0.97006 * 119.99541 * 359.97438 * 1 2 3 25 25 H 1.07992 * 119.99735 * 359.97438 * 13 12 11 26 26 H 1.08003 * 120.00156 * 179.97438 * 14 13 12 27 27 H 1.09001 * 110.24269 * 316.01981 * 17 16 15 28 28 H 1.08994 * 110.24309 * 77.92793 * 17 16 15 29 29 H 1.09005 * 110.97078 * 92.70521 * 18 17 16 30 30 H 1.09000 * 110.96989 * 216.45917 * 18 17 16 31 31 H 1.09002 * 110.48533 * 143.47810 * 19 18 17 32 32 H 1.08998 * 110.48906 * 265.98820 * 19 18 17 33 33 H 1.08001 * 120.00696 * 179.74811 * 22 15 14 34 34 H 1.08003 * 119.99299 * 180.23113 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6965 -1.2124 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0071 -1.2138 -0.0005 8 1 3.0870 -1.2139 -0.0010 9 6 1.2982 -2.4416 -0.0005 10 8 0.0815 -2.4416 0.0004 11 8 1.9728 -3.6103 -0.0005 12 6 1.2568 -4.7600 -0.1071 13 6 0.7202 -5.1325 -1.3325 14 6 -0.0067 -6.3006 -1.4413 15 6 -0.2019 -7.1036 -0.3243 16 7 -0.9393 -8.2880 -0.4341 17 6 -1.1015 -9.2659 0.6483 18 6 -1.5912 -10.5611 -0.0365 19 6 -2.2703 -10.0070 -1.3103 20 6 -1.5948 -8.6733 -1.5426 21 8 -1.6365 -8.0446 -2.5789 22 6 0.3304 -6.7277 0.9028 23 6 1.0612 -5.5619 1.0097 24 1 -0.4850 0.8401 0.0004 25 1 0.8716 -4.5080 -2.2005 26 1 -0.4244 -6.5900 -2.3943 27 1 -0.1472 -9.4397 1.1456 28 1 -1.8420 -8.9142 1.3665 29 1 -0.7522 -11.2086 -0.2919 30 1 -2.3102 -11.0867 0.5918 31 1 -2.1011 -10.6755 -2.1544 32 1 -3.3384 -9.8676 -1.1433 33 1 0.1755 -7.3496 1.7721 34 1 1.4782 -5.2715 1.9627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120760783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:00 Heat of formation + Delta-G solvation = -108.136533 kcal Electronic energy + Delta-G solvation = -20358.219163 eV Core-core repulsion = 17027.390053 eV Total energy + Delta-G solvation = -3330.829110 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.13233 -41.18932 -39.10633 -37.71483 -36.91361 -34.85942 -33.69387 -32.14571 -30.03349 -28.79825 -28.62174 -24.77619 -24.32605 -22.82603 -22.06114 -20.84776 -19.57434 -18.78299 -18.48570 -17.79882 -17.48676 -17.14526 -16.30485 -15.99702 -15.59257 -15.19553 -14.99506 -14.76486 -14.63118 -14.49035 -14.39654 -13.99140 -13.56508 -13.37832 -13.14787 -12.96059 -12.70726 -12.60677 -12.33608 -12.06509 -11.92099 -11.55479 -11.09044 -10.98438 -10.73320 -10.45886 -10.10464 -8.88021 -8.58384 -7.33466 0.02839 0.25742 1.35582 1.36831 1.44314 1.55485 1.75953 2.11217 2.13637 2.50903 3.14112 3.24577 3.27889 3.55293 3.82343 3.89312 4.01395 4.10413 4.22099 4.37159 4.45570 4.61773 4.62898 4.80367 4.87733 4.95684 5.05472 5.06136 5.09729 5.20815 5.33815 5.47669 5.71965 5.83621 6.04724 6.23362 6.51155 6.59336 6.93492 8.09230 8.34695 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.045521 B = 0.003642 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.951021 B = 7685.688406 C = 7923.041763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.028 3.972 3 Si 1.021 2.979 4 H -0.251 1.251 5 H -0.263 1.263 6 H -0.247 1.247 7 C -0.534 4.534 8 H 0.097 0.903 9 C 0.462 3.538 10 O -0.598 6.598 11 O -0.344 6.344 12 C 0.064 3.936 13 C -0.125 4.125 14 C -0.153 4.153 15 C 0.146 3.854 16 N -0.559 5.559 17 C 0.080 3.920 18 C -0.113 4.113 19 C -0.142 4.142 20 C 0.492 3.508 21 O -0.566 6.566 22 C -0.122 4.122 23 C -0.112 4.112 24 H 0.289 0.711 25 H 0.105 0.895 26 H 0.144 0.856 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.177 0.823 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.943 -20.165 4.298 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.191 4.191 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.187 1.187 6 H -0.170 1.170 7 C -0.565 4.565 8 H 0.115 0.885 9 C 0.326 3.674 10 O -0.497 6.497 11 O -0.263 6.263 12 C 0.021 3.979 13 C -0.145 4.145 14 C -0.173 4.173 15 C 0.051 3.949 16 N -0.282 5.282 17 C -0.040 4.040 18 C -0.150 4.150 19 C -0.181 4.181 20 C 0.284 3.716 21 O -0.446 6.446 22 C -0.142 4.142 23 C -0.131 4.131 24 H 0.099 0.901 25 H 0.123 0.877 26 H 0.161 0.839 27 H 0.123 0.877 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.149 0.851 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.194 0.806 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.529 -19.843 3.788 20.359 hybrid contribution 0.192 1.155 -0.484 1.267 sum -2.337 -18.688 3.304 19.121 Atomic orbital electron populations 1.70139 1.09911 1.30712 1.31348 1.27318 0.95818 1.05350 0.90603 0.84738 0.78123 0.72531 0.80938 1.17430 1.18651 1.17009 1.20192 0.96023 0.87823 1.52479 0.88478 1.20535 0.86735 0.82464 0.77621 1.90664 1.16109 1.86205 1.56678 1.84594 1.41165 1.13715 1.86849 1.19110 0.96976 0.87655 0.94153 1.21233 0.98476 0.97454 0.97301 1.21341 1.00969 0.94750 1.00272 1.17804 0.95362 0.87545 0.94156 1.46105 1.46894 1.19134 1.16088 1.22758 1.04601 0.87689 0.88973 1.22686 1.02363 0.95164 0.94830 1.22412 1.02167 0.91246 1.02320 1.22341 0.78036 0.89501 0.81767 1.90619 1.62521 1.61267 1.30175 1.20882 0.99427 0.97294 0.96555 1.21254 0.98985 0.95450 0.97365 0.90065 0.87703 0.83856 0.87664 0.88493 0.88446 0.85137 0.86259 0.85672 0.80565 0.83767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.72 11.73 21.86 0.26 -47.47 16 2 C 0.03 1.53 5.50 85.34 0.47 2.00 16 3 Si 1.02 39.76 29.56 68.60 2.03 41.79 16 4 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.25 -8.93 7.11 99.48 0.71 -8.23 16 7 C -0.53 -31.90 9.46 23.61 0.22 -31.67 16 8 H 0.10 5.29 7.85 -2.91 -0.02 5.27 16 9 C 0.46 29.47 7.59 68.70 0.52 29.99 16 10 O -0.60 -41.95 14.62 19.30 0.28 -41.67 16 11 O -0.34 -19.59 9.95 -1.48 -0.01 -19.61 16 12 C 0.06 3.19 5.19 22.57 0.12 3.30 16 13 C -0.13 -6.08 9.72 22.37 0.22 -5.86 16 14 C -0.15 -6.48 9.28 22.39 0.21 -6.27 16 15 C 0.15 4.97 6.60 38.18 0.25 5.22 16 16 N -0.56 -14.05 3.14 -627.52 -1.97 -16.02 16 17 C 0.08 0.95 6.26 86.83 0.54 1.49 16 18 C -0.11 -0.64 7.18 31.65 0.23 -0.41 16 19 C -0.14 -1.74 6.86 30.59 0.21 -1.53 16 20 C 0.49 13.10 7.92 87.90 0.70 13.80 16 21 O -0.57 -21.10 14.82 -3.06 -0.05 -21.15 16 22 C -0.12 -3.77 9.40 22.38 0.21 -3.56 16 23 C -0.11 -4.43 9.98 22.37 0.22 -4.21 16 24 H 0.29 15.35 8.29 -92.70 -0.77 14.58 16 25 H 0.10 5.31 8.06 -2.91 -0.02 5.28 16 26 H 0.14 6.26 5.26 -2.91 -0.02 6.25 16 27 H 0.11 0.92 7.71 -2.39 -0.02 0.90 16 28 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.18 3.55 7.02 -2.91 -0.02 3.53 16 34 H 0.14 5.15 8.06 -2.91 -0.02 5.13 16 Total: -1.00 -88.80 299.01 5.79 -83.01 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.13 Total: 18.82 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 4.12 Total: 2.29 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -1.71 Total: -63.49 kcal Atomic # 8 Polarization: -82.65 SS G_CDS: 0.22 Total: -82.42 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -88.80 5.79 -83.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120760783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.122 kcal (2) G-P(sol) polarization free energy of solvation -88.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds