Wall clock time and date at job start Mon Mar 30 2020 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 115.55200 * 2 1 4 4 C 1.53005 * 117.49736 * 214.29008 * 2 1 3 5 5 C 1.53001 * 60.00117 * 252.51485 * 4 2 1 6 6 H 1.09006 * 117.51306 * 252.52530 * 5 4 2 7 7 C 1.50691 * 117.50098 * 107.49268 * 5 4 2 8 8 O 1.21285 * 120.00239 * 291.37128 * 7 5 4 9 9 N 1.34779 * 120.00351 * 111.37835 * 7 5 4 10 10 S 1.65598 * 120.00430 * 179.97438 * 9 7 5 11 11 O 1.42098 * 104.27751 * 308.93245 * 10 9 7 12 12 O 1.42099 * 104.27652 * 181.07051 * 10 9 7 13 13 C 1.81405 * 104.44688 * 64.99951 * 10 9 7 14 14 C 1.52998 * 109.46866 * 179.97438 * 13 10 9 15 15 C 1.50699 * 109.46700 * 179.97438 * 14 13 10 16 16 H 1.07999 * 120.00803 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00186 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 H 1.09007 * 109.47362 * 274.33156 * 1 2 3 24 24 H 1.09003 * 109.47121 * 34.33312 * 1 2 3 25 25 H 1.09003 * 109.47571 * 154.33189 * 1 2 3 26 26 H 1.09006 * 109.47265 * 205.67164 * 3 2 1 27 27 H 1.09002 * 109.47202 * 325.66514 * 3 2 1 28 28 H 1.08996 * 109.47295 * 85.66895 * 3 2 1 29 29 H 1.08998 * 117.49800 * 145.02201 * 4 2 1 30 30 H 1.09003 * 117.49784 * 359.97438 * 4 2 1 31 31 H 0.97005 * 119.99362 * 0.02562 * 9 7 5 32 32 H 1.09004 * 109.47007 * 60.00092 * 13 10 9 33 33 H 1.08997 * 109.46881 * 300.00259 * 13 10 9 34 34 H 1.09004 * 109.47139 * 60.00287 * 14 13 10 35 35 H 1.08997 * 109.47675 * 299.99887 * 14 13 10 36 36 H 0.96998 * 120.00124 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3803 0.0000 4 6 2.2364 -1.1213 -0.7646 5 6 2.2363 -1.1208 0.7654 6 1 3.1713 -0.8747 1.2689 7 6 1.3719 -2.1402 1.4615 8 8 0.1637 -2.0528 1.4020 9 7 1.9414 -3.1489 2.1504 10 16 0.9915 -4.2687 2.9160 11 8 0.0821 -3.4914 3.6827 12 8 1.9184 -5.1435 3.5444 13 6 0.1231 -5.1211 1.5706 14 6 -0.7970 -6.1939 2.1566 15 6 -1.5189 -6.9015 1.0389 16 1 -1.3390 -6.6152 0.0132 17 6 -2.4090 -7.9147 1.3258 18 7 -3.0386 -8.5327 0.3504 19 14 -2.7207 -8.4096 3.0998 20 1 -3.8424 -7.6056 3.6483 21 1 -1.4967 -8.1650 3.9044 22 1 -3.0708 -9.8516 3.1574 23 1 -0.3634 0.0776 1.0248 24 1 -0.3633 0.8486 -0.5796 25 1 -0.3634 -0.9263 -0.4451 26 1 3.1823 1.3086 -0.4452 27 1 1.5810 2.0741 -0.5796 28 1 2.2766 1.7416 1.0247 29 1 3.1714 -0.8757 -1.2680 30 1 1.6111 -1.8592 -1.2673 31 1 2.9078 -3.2185 2.1984 32 1 0.8508 -5.5896 0.9078 33 1 -0.4703 -4.4009 1.0074 34 1 -1.5247 -5.7257 2.8195 35 1 -0.2033 -6.9140 2.7194 36 1 -3.6651 -9.2452 0.5522 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181288557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:31 Heat of formation + Delta-G solvation = -95.332269 kcal Electronic energy + Delta-G solvation = -19708.600536 eV Core-core repulsion = 16513.770612 eV Total energy + Delta-G solvation = -3194.829924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66518 -37.66266 -36.78004 -35.74939 -34.50123 -33.95712 -31.50151 -29.73819 -27.62735 -26.04594 -24.97018 -21.46547 -21.25479 -19.76147 -19.11369 -17.77910 -17.67697 -16.91241 -15.88550 -15.52706 -15.08571 -14.79751 -14.56570 -14.27402 -13.89919 -13.66585 -13.54610 -12.83965 -12.74755 -12.53603 -12.12463 -12.07936 -11.93165 -11.86647 -11.74954 -11.44507 -11.28698 -11.24118 -10.90762 -10.52794 -10.43061 -10.29892 -10.12120 -9.77800 -9.62982 -9.35493 -8.65783 -6.16107 -4.17515 0.37894 1.94236 2.60460 3.27563 3.34450 3.38122 3.38622 3.85855 4.07496 4.31236 4.36250 4.44996 4.49939 4.73389 4.83737 4.92575 5.15309 5.25683 5.40355 5.42914 5.46830 5.53483 5.63774 5.69982 5.79338 5.88501 6.01460 6.25268 6.39367 6.59593 6.79543 6.92529 7.46376 7.53967 8.36577 8.84746 9.43078 10.96231 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.004866 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.659152 B = 5753.262505 C = 6312.890420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.117 4.117 4 C -0.144 4.144 5 C -0.195 4.195 6 H 0.130 0.870 7 C 0.562 3.438 8 O -0.484 6.484 9 N -1.055 6.055 10 S 2.564 3.436 11 O -0.938 6.938 12 O -0.955 6.955 13 C -0.568 4.568 14 C -0.005 4.005 15 C -0.518 4.518 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.895 5.895 19 Si 0.869 3.131 20 H -0.271 1.271 21 H -0.262 1.262 22 H -0.282 1.282 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.429 0.571 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.917 17.130 -1.354 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.174 4.174 4 C -0.181 4.181 5 C -0.218 4.218 6 H 0.148 0.852 7 C 0.349 3.651 8 O -0.355 6.355 9 N -0.816 5.816 10 S 2.664 3.336 11 O -0.928 6.928 12 O -0.946 6.946 13 C -0.703 4.703 14 C -0.045 4.045 15 C -0.558 4.558 16 H 0.096 0.904 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.696 3.304 20 H -0.196 1.196 21 H -0.187 1.187 22 H -0.207 1.207 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.264 0.736 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.869 16.982 -0.472 21.312 hybrid contribution 0.381 -0.586 0.330 0.772 sum 13.250 16.396 -0.143 21.081 Atomic orbital electron populations 1.21461 0.90296 1.02069 1.03110 1.21658 0.96269 0.90573 1.00721 1.21408 0.99955 0.93679 1.02339 1.23315 1.03204 1.01670 0.89904 1.22455 1.02213 1.00897 0.96263 0.85245 1.19685 0.88353 0.80552 0.76506 1.90916 1.13757 1.72954 1.57842 1.55334 1.22951 1.40048 1.63271 1.06676 0.74952 0.74394 0.77540 1.93602 1.64294 1.67915 1.67030 1.93596 1.62140 1.65365 1.73466 1.30174 1.12262 1.11818 1.16021 1.19431 0.94307 0.92440 0.98314 1.20809 1.23991 1.17671 0.93282 0.90353 1.24971 0.95076 0.95629 0.97347 1.69879 1.27609 1.24034 1.31752 0.86925 0.79705 0.78308 0.85509 1.19598 1.18653 1.20718 0.91014 0.92804 0.91240 0.92217 0.91423 0.91867 0.87405 0.87642 0.73598 0.85464 0.84543 0.95130 0.94870 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 8.09 37.15 0.30 -0.95 16 2 C -0.09 -0.82 2.70 -154.51 -0.42 -1.24 16 3 C -0.12 -0.77 9.85 37.15 0.37 -0.41 16 4 C -0.14 -1.14 9.53 -26.73 -0.25 -1.40 16 5 C -0.20 -1.79 5.91 -91.77 -0.54 -2.33 16 6 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 7 C 0.56 7.35 7.33 -10.99 -0.08 7.27 16 8 O -0.48 -8.03 11.21 -11.58 -0.13 -8.16 16 9 N -1.05 -13.00 5.60 31.22 0.17 -12.83 16 10 S 2.56 44.60 5.11 -107.50 -0.55 44.05 16 11 O -0.94 -19.63 17.04 -64.79 -1.10 -20.73 16 12 O -0.96 -18.03 18.08 -57.54 -1.04 -19.07 16 13 C -0.57 -10.87 5.82 37.16 0.22 -10.65 16 14 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 15 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 16 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 18 N -0.89 -27.23 13.96 55.43 0.77 -26.45 16 19 Si 0.87 21.66 27.47 -169.99 -4.67 17.00 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H 0.07 0.92 7.26 -51.93 -0.38 0.54 16 24 H 0.05 0.50 7.92 -51.93 -0.41 0.08 16 25 H 0.07 0.87 7.02 -51.93 -0.36 0.51 16 26 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 27 H 0.07 0.41 7.92 -51.93 -0.41 0.00 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.11 0.61 8.05 -51.93 -0.42 0.19 16 30 H 0.11 0.93 8.05 -51.93 -0.42 0.51 16 31 H 0.43 3.52 8.79 -34.47 -0.30 3.22 16 32 H 0.13 2.12 8.14 -51.92 -0.42 1.70 16 33 H 0.14 2.59 7.19 -51.93 -0.37 2.22 16 34 H 0.03 0.74 7.57 -51.93 -0.39 0.34 16 35 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 36 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -35.96 313.22 -7.89 -43.84 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.11 Total: 0.58 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -0.95 Total: -22.95 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.95 Total: -39.28 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -2.27 Total: -47.96 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 16 Polarization: 44.60 SS G_CDS: -0.55 Total: 44.05 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.96 -7.89 -43.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181288557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.489 kcal (2) G-P(sol) polarization free energy of solvation -35.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds