Wall clock time and date at job start Mon Mar 30 2020 01:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47045 * 2 1 4 4 N 1.46503 * 109.47530 * 239.99960 * 2 1 3 5 5 C 1.36933 * 120.00077 * 84.99595 * 4 2 1 6 6 H 1.07996 * 120.00140 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99633 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00175 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99782 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47169 * 60.00081 * 9 7 5 11 11 H 1.48498 * 109.47215 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47149 * 300.00563 * 9 7 5 13 13 C 1.50702 * 109.47306 * 119.99353 * 2 1 3 14 14 C 1.38294 * 119.97003 * 79.97752 * 13 2 1 15 15 C 1.38232 * 120.11124 * 180.02562 * 14 13 2 16 16 C 1.38173 * 120.05823 * 359.97438 * 15 14 13 17 17 C 1.38705 * 119.94203 * 359.76822 * 16 15 14 18 18 O 1.35904 * 120.05924 * 180.25551 * 17 16 15 19 19 C 1.42903 * 116.99671 * 0.25297 * 18 17 16 20 20 F 1.39906 * 109.46765 * 60.00060 * 19 18 17 21 21 F 1.39895 * 109.46934 * 179.97438 * 19 18 17 22 22 F 1.39897 * 109.47350 * 300.00333 * 19 18 17 23 23 C 1.38122 * 119.97497 * 260.00808 * 13 2 1 24 24 H 1.08997 * 109.47336 * 300.00129 * 1 2 3 25 25 H 1.09006 * 109.47142 * 60.00522 * 1 2 3 26 26 H 1.09003 * 109.47045 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99305 * 265.00198 * 4 2 1 28 28 H 0.97002 * 119.99531 * 179.97438 * 8 7 5 29 29 H 1.08003 * 119.94130 * 0.05120 * 14 13 2 30 30 H 1.08008 * 119.97134 * 180.02562 * 15 14 13 31 31 H 1.07997 * 120.02588 * 180.02562 * 16 15 14 32 32 H 1.08002 * 120.02504 * 359.97056 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0404 -2.4242 7 6 2.6114 -0.6621 -3.5092 8 7 2.9236 -1.9394 -3.4502 9 14 2.7905 0.2698 -5.1182 10 1 3.7465 1.3916 -4.9367 11 1 3.2983 -0.6489 -6.1685 12 1 1.4686 0.8077 -5.5285 13 6 2.0323 -0.7103 1.2305 14 6 2.0661 -2.0924 1.2651 15 6 2.5258 -2.7469 2.3925 16 6 2.9535 -2.0213 3.4879 17 6 2.9256 -0.6350 3.4537 18 8 3.3506 0.0811 4.5278 19 6 3.8185 -0.6592 5.6570 20 9 4.9085 -1.4498 5.2771 21 9 4.2145 0.2272 6.6642 22 9 2.7913 -1.4800 6.1349 23 6 2.4581 0.0196 2.3231 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 2.2491 -1.6318 -1.1525 28 1 3.2463 -2.3968 -4.2424 29 1 1.7330 -2.6613 0.4096 30 1 2.5516 -3.8264 2.4169 31 1 3.3129 -2.5332 4.3683 32 1 2.4315 1.0990 2.2956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181894413.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:17 Heat of formation + Delta-G solvation = -159.991782 kcal Electronic energy + Delta-G solvation = -21013.164368 eV Core-core repulsion = 17138.229906 eV Total energy + Delta-G solvation = -3874.934462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.55832 -48.29403 -48.14055 -40.20391 -38.05434 -35.21264 -32.35125 -30.63928 -29.55763 -28.14715 -26.06761 -24.24386 -22.90166 -22.51798 -20.78003 -19.26301 -19.16755 -18.72670 -17.43956 -16.51213 -16.01641 -15.29620 -15.19408 -14.94099 -14.62953 -14.59628 -14.50049 -14.35957 -14.24826 -14.10582 -13.59634 -13.35448 -13.03417 -12.84179 -12.38643 -11.83131 -11.66411 -11.29733 -11.20624 -10.84633 -10.76419 -10.36297 -10.07340 -9.72966 -9.02803 -8.68752 -8.34427 -7.04669 -5.81811 -3.11079 1.39358 1.42671 1.46039 2.74507 3.42038 3.46648 3.47390 3.68234 3.73329 3.97357 4.55284 4.73918 4.84095 5.21272 5.29460 5.46564 5.53009 5.58132 5.79492 5.99152 6.10649 6.16243 6.26527 6.41553 6.49721 6.56783 6.64857 6.88004 7.05129 7.12352 7.65459 8.36149 9.47801 10.01726 10.37215 11.40695 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.034448 B = 0.003832 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.616740 B = 7305.231131 C = 7325.673936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.206 3.794 3 H 0.060 0.940 4 N -0.721 5.721 5 C -0.242 4.242 6 H 0.072 0.928 7 C -0.010 4.010 8 N -0.932 5.932 9 Si 0.909 3.091 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.285 1.285 13 C -0.030 4.030 14 C -0.118 4.118 15 C -0.080 4.080 16 C -0.203 4.203 17 C 0.095 3.905 18 O -0.311 6.311 19 C 0.603 3.397 20 F -0.166 7.166 21 F -0.136 7.136 22 F -0.167 7.167 23 C -0.121 4.121 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.386 0.614 28 H 0.257 0.743 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 0.588 18.185 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.096 3.904 3 H 0.078 0.922 4 N -0.363 5.363 5 C -0.373 4.373 6 H 0.090 0.910 7 C -0.207 4.207 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.212 1.212 13 C -0.032 4.032 14 C -0.137 4.137 15 C -0.098 4.098 16 C -0.222 4.222 17 C 0.054 3.946 18 O -0.232 6.232 19 C 0.512 3.488 20 F -0.148 7.148 21 F -0.118 7.118 22 F -0.149 7.149 23 C -0.140 4.140 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.221 0.779 28 H 0.066 0.934 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.417 0.876 18.067 18.093 hybrid contribution 0.394 -0.096 -0.565 0.696 sum -0.023 0.779 17.501 17.518 Atomic orbital electron populations 1.22429 0.97880 1.01348 1.00388 1.19239 0.92359 0.95088 0.83691 0.92222 1.42509 1.78289 1.10715 1.04796 1.19195 1.37058 0.94047 0.87036 0.91013 1.24740 1.01820 0.95992 0.98123 1.69645 1.50554 1.08669 1.29119 0.86252 0.77828 0.78622 0.83371 1.21205 1.21675 1.21199 1.20341 0.94264 0.93887 0.94666 1.21184 0.99895 0.94363 0.98229 1.20925 0.96726 0.99954 0.92202 1.21356 1.07420 0.91874 1.01514 1.18633 0.99917 0.90356 0.85734 1.86398 1.78516 1.35346 1.22903 1.19363 0.75461 0.74807 0.79140 1.93303 1.55864 1.74655 1.90995 1.93285 1.90482 1.69399 1.58608 1.93288 1.59802 1.73029 1.88822 1.20267 1.02642 1.00638 0.90487 0.94163 0.92138 0.93170 0.77919 0.93361 0.84672 0.85279 0.85562 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.47 37.15 0.35 -2.43 16 2 C 0.21 3.98 3.09 -69.08 -0.21 3.77 16 3 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 4 N -0.72 -17.44 5.07 -54.55 -0.28 -17.71 16 5 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 8 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 9 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 C -0.03 -0.52 4.95 -104.64 -0.52 -1.04 16 14 C -0.12 -1.95 9.05 -39.56 -0.36 -2.30 16 15 C -0.08 -1.13 10.04 -39.61 -0.40 -1.53 16 16 C -0.20 -2.83 8.26 -39.43 -0.33 -3.15 16 17 C 0.10 1.40 6.48 -39.22 -0.25 1.15 16 18 O -0.31 -4.23 10.37 -19.44 -0.20 -4.43 16 19 C 0.60 7.01 3.42 101.05 0.35 7.36 16 20 F -0.17 -1.96 15.58 2.25 0.04 -1.93 16 21 F -0.14 -1.47 17.53 2.25 0.04 -1.43 16 22 F -0.17 -1.88 15.55 2.25 0.04 -1.85 16 23 C -0.12 -1.88 9.61 -39.43 -0.38 -2.26 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.39 9.78 6.06 -40.82 -0.25 9.53 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.14 2.32 6.91 -52.48 -0.36 1.96 16 30 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 31 H 0.13 1.55 5.10 -52.49 -0.27 1.28 16 32 H 0.14 1.88 8.04 -52.49 -0.42 1.46 16 LS Contribution 290.51 15.07 4.38 4.38 Total: -1.00 -28.75 290.51 -5.23 -33.98 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -2.95 Total: 6.34 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -1.99 Total: -7.52 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.45 Total: -44.46 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.20 Total: -4.43 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.11 Total: -5.20 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.75 -5.23 -33.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181894413.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.011 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds