Wall clock time and date at job start Mon Mar 30 2020 01:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50706 * 119.94244 * 179.97438 * 6 5 4 8 8 H 1.08991 * 109.47003 * 20.00251 * 7 6 5 9 9 N 1.46505 * 109.46653 * 140.00269 * 7 6 5 10 10 C 1.36945 * 119.99533 * 204.99689 * 9 7 6 11 11 H 1.07997 * 120.00229 * 0.02562 * 10 9 7 12 12 C 1.38815 * 119.99844 * 179.97438 * 10 9 7 13 13 N 1.31624 * 119.99701 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00084 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47106 * 89.99931 * 14 12 10 16 16 H 1.48494 * 109.47375 * 210.00326 * 14 12 10 17 17 H 1.48499 * 109.47002 * 330.00297 * 14 12 10 18 18 C 1.52999 * 109.47275 * 260.00049 * 7 6 5 19 19 F 1.39897 * 109.47151 * 59.99962 * 18 7 6 20 20 F 1.39897 * 109.47127 * 180.02562 * 18 7 6 21 21 F 1.39903 * 109.47105 * 299.99974 * 18 7 6 22 22 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 23 23 C 1.38137 * 120.05826 * 0.02562 * 22 6 5 24 24 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 25 25 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 26 26 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 28 28 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 29 29 H 0.96992 * 120.00197 * 25.00202 * 9 7 6 30 30 H 0.96996 * 119.99574 * 179.97438 * 13 12 10 31 31 H 1.08007 * 119.96697 * 180.02562 * 22 6 5 32 32 H 1.07992 * 120.03165 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0107 8 1 5.0101 4.9031 -0.3658 9 7 3.2616 5.9322 -0.8977 10 6 3.9141 6.9910 -1.4709 11 1 4.9628 7.1523 -1.2694 12 6 3.2278 7.8564 -2.3117 13 7 1.9498 7.6596 -2.5576 14 14 4.1179 9.3003 -3.0941 15 1 4.6886 8.8814 -4.3995 16 1 3.1607 10.4154 -3.3072 17 1 5.2123 9.7518 -2.1976 18 6 3.9998 5.5896 1.4087 19 9 4.6916 4.7171 2.2556 20 9 4.6345 6.8363 1.4036 21 9 2.6855 5.7377 1.8645 22 6 1.9211 3.6048 -0.0001 23 6 1.2915 2.3752 0.0053 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 4.0209 0.3800 -0.0014 28 1 5.1345 2.5750 -0.0108 29 1 2.3198 5.7872 -1.0788 30 1 1.4702 8.2645 -3.1449 31 1 1.3342 4.5115 -0.0001 32 1 0.2130 2.3202 0.0099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183382536.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:00 Heat of formation + Delta-G solvation = -172.502581 kcal Electronic energy + Delta-G solvation = -21684.666000 eV Core-core repulsion = 17809.189028 eV Total energy + Delta-G solvation = -3875.476971 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.78402 -48.31008 -48.28329 -41.10962 -38.95145 -36.64804 -33.92241 -32.06031 -31.16066 -28.91032 -27.74910 -25.86281 -24.29478 -23.26425 -21.94606 -19.74314 -19.26067 -19.06647 -18.94318 -18.32511 -17.14203 -16.81019 -16.60870 -16.11366 -15.62042 -15.38054 -15.13475 -15.08335 -14.74783 -14.60452 -14.52811 -14.46115 -14.21952 -14.14275 -13.80818 -13.27728 -13.08525 -12.81526 -12.75184 -12.44037 -12.14833 -12.02500 -11.84584 -11.68777 -11.13741 -9.95101 -9.33832 -9.14154 -8.05877 -5.40490 0.33001 0.40408 1.48248 1.49662 1.58778 2.09018 2.37793 2.47567 2.74264 3.13587 3.26748 3.35408 3.45621 3.83638 3.90239 3.98511 4.08511 4.30890 4.38797 4.41754 4.48536 4.60398 4.74920 4.76351 5.07655 5.24174 5.36741 5.45764 5.63240 5.75459 6.11167 6.43293 7.21459 7.76284 8.05815 9.15718 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.019968 B = 0.005981 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.890722 B = 4679.999937 C = 5468.504250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.125 3.875 4 C -0.155 4.155 5 C -0.058 4.058 6 C -0.146 4.146 7 C 0.187 3.813 8 H 0.110 0.890 9 N -0.703 5.703 10 C -0.261 4.261 11 H 0.085 0.915 12 C -0.057 4.057 13 N -0.959 5.959 14 Si 0.976 3.024 15 H -0.281 1.281 16 H -0.294 1.294 17 H -0.269 1.269 18 C 0.414 3.586 19 F -0.192 7.192 20 F -0.195 7.195 21 F -0.198 7.198 22 C -0.067 4.067 23 C -0.210 4.210 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.124 0.876 27 H 0.156 0.844 28 H 0.155 0.845 29 H 0.385 0.615 30 H 0.257 0.743 31 H 0.111 0.889 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 -14.017 5.977 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.079 3.921 4 C -0.173 4.173 5 C -0.076 4.076 6 C -0.147 4.147 7 C 0.073 3.927 8 H 0.128 0.872 9 N -0.340 5.340 10 C -0.392 4.392 11 H 0.103 0.897 12 C -0.250 4.250 13 N -0.607 5.607 14 Si 0.804 3.196 15 H -0.207 1.207 16 H -0.221 1.221 17 H -0.194 1.194 18 C 0.355 3.645 19 F -0.173 7.173 20 F -0.176 7.176 21 F -0.180 7.180 22 C -0.085 4.085 23 C -0.228 4.228 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.142 0.858 27 H 0.174 0.826 28 H 0.173 0.827 29 H 0.220 0.780 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.492 -14.035 5.896 15.231 hybrid contribution -0.531 1.464 -0.154 1.565 sum -0.038 -12.571 5.742 13.820 Atomic orbital electron populations 1.23349 0.76641 1.05661 1.02090 1.86035 1.23298 1.26251 1.88536 1.19207 0.92851 0.84296 0.95704 1.20624 0.91434 0.98896 1.06354 1.21041 1.00981 0.90030 0.95553 1.19635 0.94217 0.93676 1.07158 1.20307 0.99615 0.88132 0.84676 0.87219 1.42622 1.10819 1.29304 1.51252 1.19654 0.94918 1.03011 1.21574 0.89679 1.25627 0.96585 1.02017 1.00810 1.69811 1.09272 1.40408 1.41183 0.85117 0.77483 0.78457 0.78532 1.20713 1.22088 1.19374 1.23219 0.72501 0.76160 0.92614 1.93089 1.79880 1.69491 1.74876 1.93106 1.82369 1.45094 1.97035 1.93060 1.38084 1.95820 1.91001 1.20824 0.94209 0.97690 0.95824 1.21329 1.01074 0.91499 1.08946 0.91940 0.92216 0.85758 0.82646 0.82706 0.77966 0.93465 0.87092 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.71 10.50 -92.47 -0.97 -8.68 16 3 C 0.12 3.39 6.69 22.51 0.15 3.54 16 4 C -0.15 -3.98 9.99 22.37 0.22 -3.75 16 5 C -0.06 -1.62 9.66 22.25 0.22 -1.41 16 6 C -0.15 -5.05 4.64 -19.85 -0.09 -5.15 16 7 C 0.19 7.41 2.56 44.25 0.11 7.52 16 8 H 0.11 4.02 7.94 -2.39 -0.02 4.00 16 9 N -0.70 -34.33 4.98 -326.48 -1.63 -35.96 16 10 C -0.26 -13.91 9.21 84.03 0.77 -13.14 16 11 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 12 C -0.06 -3.13 5.50 84.86 0.47 -2.67 16 13 N -0.96 -56.52 13.06 21.65 0.28 -56.24 16 14 Si 0.98 44.72 29.55 68.60 2.03 46.75 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 16 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 C 0.41 16.57 2.82 71.98 0.20 16.78 16 19 F -0.19 -6.80 17.02 44.97 0.77 -6.03 16 20 F -0.19 -8.52 16.54 44.97 0.74 -7.77 16 21 F -0.20 -8.37 16.18 44.97 0.73 -7.65 16 22 C -0.07 -2.33 8.29 22.25 0.18 -2.14 16 23 C -0.21 -6.08 9.04 22.36 0.20 -5.88 16 24 H 0.06 0.91 7.65 -2.39 -0.02 0.89 16 25 H 0.06 0.92 7.67 -2.39 -0.02 0.90 16 26 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 28 H 0.16 3.49 8.03 -2.91 -0.02 3.47 16 29 H 0.39 20.06 6.06 -92.71 -0.56 19.50 16 30 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 31 H 0.11 4.28 6.78 -2.91 -0.02 4.26 16 32 H 0.15 3.50 6.30 -2.91 -0.02 3.48 16 Total: -1.00 -63.37 290.13 6.11 -57.26 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.61 Total: 23.24 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 3.55 Total: -4.93 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -1.34 Total: -92.19 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.97 Total: -8.68 kcal Atomic # 9 Polarization: -23.69 SS G_CDS: 2.24 Total: -21.45 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -63.37 6.11 -57.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183382536.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.244 kcal (2) G-P(sol) polarization free energy of solvation -63.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds