Wall clock time and date at job start Mon Mar 30 2020 02:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.62704 * 2 1 4 4 C 1.53002 * 109.47265 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47566 * 180.02562 * 4 3 2 6 6 C 1.34771 * 120.00340 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99870 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99943 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.47024 * 180.02562 * 8 6 5 10 10 C 1.76188 * 100.00042 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00141 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00086 * 180.02562 * 10 9 8 13 13 N 1.31635 * 120.00033 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00021 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46824 * 89.99952 * 14 12 10 16 16 H 1.48498 * 109.46980 * 209.99900 * 14 12 10 17 17 H 1.48498 * 109.46790 * 330.00207 * 14 12 10 18 18 O 1.43372 * 109.63127 * 239.76210 * 2 1 3 19 19 C 1.44194 * 107.28623 * 240.78720 * 18 2 1 20 20 C 1.54917 * 103.07986 * 21.43649 * 19 18 2 21 21 O 1.43747 * 109.63642 * 120.39490 * 2 1 3 22 22 H 1.09002 * 109.47153 * 300.30456 * 1 2 3 23 23 H 1.09001 * 109.46832 * 180.30647 * 1 2 3 24 24 H 1.09004 * 109.47261 * 60.30628 * 1 2 3 25 25 H 1.08996 * 109.47445 * 299.99932 * 3 2 1 26 26 H 1.08995 * 109.47037 * 60.00216 * 3 2 1 27 27 H 1.09000 * 109.47443 * 300.00800 * 4 3 2 28 28 H 1.09005 * 109.46852 * 60.00171 * 4 3 2 29 29 H 0.96998 * 119.99390 * 0.02562 * 5 4 3 30 30 H 1.08991 * 109.47086 * 300.00118 * 8 6 5 31 31 H 1.08995 * 109.47061 * 60.00297 * 8 6 5 32 32 H 0.96998 * 120.00188 * 180.02562 * 13 12 10 33 33 H 1.09004 * 110.69727 * 263.03594 * 19 18 2 34 34 H 1.09001 * 110.84329 * 139.90609 * 19 18 2 35 35 H 1.08991 * 110.98199 * 206.33156 * 20 19 18 36 36 H 1.08999 * 110.97420 * 82.53830 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 3.5739 1.4370 0.0006 5 7 4.0661 2.8168 0.0013 6 6 5.3917 3.0595 0.0014 7 8 6.1774 2.1355 0.0005 8 6 5.8979 4.4790 0.0014 9 16 7.7080 4.4741 0.0008 10 6 8.0186 6.2084 0.0018 11 1 7.1932 6.9048 0.0029 12 6 9.3242 6.6795 0.0011 13 7 9.5563 7.9753 0.0023 14 14 10.7520 5.4749 -0.0002 15 1 11.1293 5.1561 -1.4005 16 1 11.9126 6.0823 0.6993 17 1 10.3487 4.2289 0.6998 18 8 2.0117 -0.6800 -1.1667 19 6 2.7885 -1.8078 -0.7151 20 6 2.2653 -2.0401 0.7244 21 8 2.0130 -0.6850 1.1678 22 1 -0.3633 0.5186 0.8872 23 1 -0.3633 -1.0277 0.0055 24 1 -0.3634 0.5091 -0.8927 25 1 1.6820 1.9559 -0.8899 26 1 1.6820 1.9559 0.8900 27 1 3.9355 0.9222 0.8908 28 1 3.9362 0.9220 -0.8892 29 1 3.4377 3.5558 0.0016 30 1 5.5361 4.9938 -0.8885 31 1 5.5360 4.9938 0.8914 32 1 10.4687 8.3046 0.0014 33 1 3.8509 -1.5642 -0.7042 34 1 2.6017 -2.6821 -1.3387 35 1 3.0245 -2.5181 1.3432 36 1 1.3458 -2.6253 0.7157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185542857.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:17 Heat of formation + Delta-G solvation = -133.539434 kcal Electronic energy + Delta-G solvation = -18951.420483 eV Core-core repulsion = 15754.933772 eV Total energy + Delta-G solvation = -3196.486711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.00165 -39.14292 -35.35945 -35.27951 -33.00117 -32.41889 -30.36011 -28.86454 -28.29455 -25.59914 -23.60128 -23.44290 -21.34977 -20.36210 -17.87925 -17.71880 -16.84154 -16.40031 -16.18785 -15.61956 -15.37394 -14.93308 -14.75812 -14.25918 -13.99590 -13.76976 -13.42963 -13.19089 -13.18220 -12.77898 -12.60663 -12.52088 -12.19953 -11.94220 -11.57665 -11.40955 -11.24627 -10.98966 -10.59348 -10.51509 -10.06917 -9.82943 -9.45558 -8.99333 -8.89852 -8.47563 -6.89441 -6.27173 -3.98593 2.79196 3.01865 3.04148 3.31011 3.35371 3.52386 3.56212 3.71562 4.21060 4.35034 4.38727 4.43491 4.59182 4.75930 4.82882 4.90353 5.02755 5.04963 5.11912 5.23538 5.24928 5.31398 5.38388 5.51880 5.55780 5.69368 5.76587 5.85746 5.96835 6.04748 6.57630 6.74399 7.66355 7.96023 8.43510 8.54374 9.19119 10.82127 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.044680 B = 0.003213 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.527305 B = 8713.545455 C = 9107.598660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.258 3.742 3 C -0.134 4.134 4 C 0.126 3.874 5 N -0.737 5.737 6 C 0.530 3.470 7 O -0.521 6.521 8 C -0.124 4.124 9 S -0.142 6.142 10 C -0.521 4.521 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.881 5.881 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 O -0.376 6.376 19 C 0.018 3.982 20 C 0.016 3.984 21 O -0.368 6.368 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.399 0.601 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.271 0.729 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.867 -18.116 0.171 26.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.181 3.819 3 C -0.172 4.172 4 C 0.002 3.998 5 N -0.391 5.391 6 C 0.316 3.684 7 O -0.395 6.395 8 C -0.274 4.274 9 S 0.084 5.916 10 C -0.668 4.668 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.518 5.518 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.159 1.159 18 O -0.297 6.297 19 C -0.058 4.058 20 C -0.061 4.061 21 O -0.288 6.288 22 H 0.096 0.904 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.232 0.768 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.433 -19.356 0.176 26.729 hybrid contribution -0.527 1.046 -0.023 1.171 sum -18.960 -18.310 0.153 26.358 Atomic orbital electron populations 1.22348 0.93384 1.03361 1.03574 1.23281 0.92872 0.90648 0.75118 1.22137 0.96193 0.94733 1.04167 1.21163 0.92235 0.83663 1.02777 1.45946 1.07227 1.08293 1.77654 1.20269 0.81670 0.91190 0.75274 1.90690 1.55164 1.45886 1.47797 1.23280 1.02926 0.95430 1.05812 1.84779 0.97606 1.11799 1.97422 1.22327 0.96862 0.88993 1.58667 0.89386 1.24717 0.98335 0.95091 0.93191 1.69942 1.21462 1.12213 1.48184 0.86728 0.82272 0.82885 0.79932 1.19208 1.19955 1.15908 1.88913 1.69450 1.42067 1.29264 1.24238 0.97134 0.89625 0.94832 1.24384 1.01425 0.85072 0.95183 1.89296 1.85939 1.21825 1.31785 0.90429 0.91725 0.90516 0.89187 0.89386 0.91146 0.91338 0.76754 0.88488 0.88446 0.91954 0.90061 0.88215 0.87175 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 9.20 37.16 0.34 -0.86 16 2 C 0.26 2.39 1.06 -26.73 -0.03 2.36 16 3 C -0.13 -1.24 4.83 -26.73 -0.13 -1.37 16 4 C 0.13 1.58 5.38 -4.04 -0.02 1.56 16 5 N -0.74 -10.01 5.56 -60.29 -0.33 -10.34 16 6 C 0.53 9.83 7.85 -10.99 -0.09 9.75 16 7 O -0.52 -11.69 15.86 5.56 0.09 -11.60 16 8 C -0.12 -2.45 6.16 36.01 0.22 -2.23 16 9 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 10 C -0.52 -15.19 10.04 30.94 0.31 -14.88 16 11 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 12 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 13 N -0.88 -26.84 13.97 55.49 0.78 -26.07 16 14 Si 0.86 22.02 27.74 -169.99 -4.72 17.30 16 15 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 18 O -0.38 -3.83 10.18 -59.04 -0.60 -4.43 16 19 C 0.02 0.14 8.07 38.17 0.31 0.45 16 20 C 0.02 0.11 7.92 38.17 0.30 0.41 16 21 O -0.37 -3.70 10.33 -59.04 -0.61 -4.31 16 22 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.99 7.68 -51.93 -0.40 0.60 16 28 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16 29 H 0.40 4.12 8.47 -40.82 -0.35 3.77 16 30 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 31 H 0.10 1.79 8.14 -51.92 -0.42 1.36 16 32 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 318.86 15.07 4.81 4.81 Total: -1.00 -35.44 318.86 -6.83 -42.27 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.37 Total: 0.14 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 1.12 Total: -2.08 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.44 Total: -36.41 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -1.12 Total: -20.34 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.72 Total: 17.30 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.44 -6.83 -42.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185542857.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.271 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds