Wall clock time and date at job start Mon Mar 30 2020 01:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86809 * 119.99545 * 2 1 4 4 H 1.48500 * 109.46886 * 239.99840 * 3 2 1 5 5 H 1.48500 * 109.46854 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46988 * 119.99972 * 3 2 1 7 7 C 1.39931 * 120.00708 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00217 * 163.21194 * 7 2 1 9 9 C 1.41439 * 119.99807 * 343.21736 * 7 2 1 10 10 C 1.40786 * 120.17949 * 154.62099 * 9 7 2 11 11 C 1.37707 * 120.04198 * 179.74634 * 10 9 7 12 12 C 1.38379 * 120.41080 * 359.97438 * 11 10 9 13 13 C 1.39880 * 120.35665 * 359.97438 * 12 11 10 14 14 C 1.47888 * 120.02304 * 180.02562 * 13 12 11 15 15 O 1.21548 * 120.00247 * 180.02562 * 14 13 12 16 16 N 1.34782 * 119.99699 * 0.02562 * 14 13 12 17 17 C 1.46498 * 119.99476 * 185.09387 * 16 14 13 18 18 C 1.50702 * 115.55212 * 294.27087 * 17 16 14 19 19 O 1.20828 * 120.00501 * 142.93414 * 18 17 16 20 20 O 1.34229 * 120.00067 * 322.93672 * 18 17 16 21 21 C 1.53003 * 117.50064 * 148.60320 * 17 16 14 22 22 C 1.53000 * 117.50146 * 79.94452 * 17 16 14 23 23 C 1.39025 * 119.95071 * 0.06998 * 13 12 11 24 24 H 0.97001 * 120.00540 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.97903 * 359.71944 * 10 9 7 26 26 H 1.08000 * 119.79673 * 179.97438 * 11 10 9 27 27 H 1.08001 * 119.81721 * 180.02562 * 12 11 10 28 28 H 0.96992 * 120.00387 * 5.09143 * 16 14 13 29 29 H 0.96695 * 117.00206 * 179.97438 * 20 18 17 30 30 H 1.09002 * 117.49460 * 359.97438 * 21 17 16 31 31 H 1.09000 * 117.50257 * 145.01532 * 21 17 16 32 32 H 1.09010 * 117.49875 * 214.97893 * 22 17 16 33 33 H 1.08996 * 117.49696 * 359.96929 * 22 17 16 34 34 H 1.08006 * 120.20217 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2770 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0535 -1.2317 -0.2696 9 6 1.3461 -2.4105 0.3548 10 6 1.8165 -3.6473 -0.1258 11 6 1.1730 -4.8131 0.2250 12 6 0.0629 -4.7793 1.0505 13 6 -0.4183 -3.5599 1.5385 14 6 -1.6050 -3.5324 2.4206 15 8 -2.0230 -2.4726 2.8441 16 7 -2.2229 -4.6826 2.7549 17 6 -3.4619 -4.6482 3.5358 18 6 -3.3294 -4.1242 4.9426 19 8 -4.2083 -3.4465 5.4202 20 8 -2.2348 -4.4103 5.6650 21 6 -4.4833 -5.7606 3.2897 22 6 -4.7606 -4.3415 2.7872 23 6 0.2193 -2.3738 1.1930 24 1 -0.4851 0.8400 -0.0004 25 1 2.6824 -3.6818 -0.7705 26 1 1.5370 -5.7597 -0.1462 27 1 -0.4342 -5.6995 1.3199 28 1 -1.8473 -5.5331 2.4785 29 1 -2.1947 -4.0516 6.5620 30 1 -4.2334 -6.5177 2.5464 31 1 -5.0595 -6.1131 4.1452 32 1 -5.5192 -3.7610 3.3123 33 1 -4.6930 -4.1649 1.7138 34 1 -0.1490 -1.4300 1.5672 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263134233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:16 Heat of formation + Delta-G solvation = -80.032881 kcal Electronic energy + Delta-G solvation = -20635.977592 eV Core-core repulsion = 17306.367148 eV Total energy + Delta-G solvation = -3329.610444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63264 -39.07267 -37.41315 -36.64111 -35.85181 -33.80990 -32.55747 -29.98855 -29.46879 -25.60184 -25.15275 -23.02844 -22.72212 -21.03844 -20.30642 -19.54734 -18.13111 -17.80951 -17.21967 -16.23295 -15.56108 -15.27054 -14.99499 -14.67780 -14.41173 -14.00593 -13.84715 -13.27258 -13.03064 -12.64426 -12.53830 -11.77312 -11.69097 -11.50843 -11.33135 -11.19711 -11.13061 -10.96753 -10.78749 -10.54445 -10.45383 -10.08480 -9.73466 -9.24406 -9.13677 -8.91392 -7.68947 -7.55567 -6.82090 -4.44894 2.07966 2.13772 2.78869 2.92562 3.06506 3.08203 3.14434 3.18919 3.62692 3.82981 3.90464 4.54155 4.58081 4.68445 4.98848 5.30929 5.36935 5.56285 5.71319 5.77932 5.91618 6.03050 6.22281 6.50630 6.63449 6.67060 6.93808 6.96549 7.17399 7.33215 7.63576 7.68784 7.86346 7.94952 7.99220 8.13909 8.46270 8.76167 8.78972 8.82900 10.12760 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.005026 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.172359 B = 5569.982485 C = 6261.736091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.210 4.210 11 C -0.097 4.097 12 C -0.217 4.217 13 C -0.126 4.126 14 C 0.568 3.432 15 O -0.534 6.534 16 N -0.697 5.697 17 C 0.093 3.907 18 C 0.521 3.479 19 O -0.512 6.512 20 O -0.504 6.504 21 C -0.147 4.147 22 C -0.137 4.137 23 C -0.090 4.090 24 H 0.286 0.714 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.407 0.593 29 H 0.408 0.592 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 -9.682 5.080 12.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.097 3.903 10 C -0.230 4.230 11 C -0.115 4.115 12 C -0.237 4.237 13 C -0.130 4.130 14 C 0.360 3.640 15 O -0.410 6.410 16 N -0.353 5.353 17 C 0.003 3.997 18 C 0.362 3.638 19 O -0.399 6.399 20 O -0.315 6.315 21 C -0.184 4.184 22 C -0.175 4.175 23 C -0.110 4.110 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.245 0.755 29 H 0.267 0.733 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.231 -8.698 5.091 11.849 hybrid contribution 0.623 0.556 0.417 0.933 sum -5.608 -8.142 5.508 11.318 Atomic orbital electron populations 1.69764 1.07575 1.29950 1.33573 1.25963 0.94791 1.01563 0.92293 0.86310 0.80092 0.80057 0.79987 1.18933 1.20208 1.18709 1.19565 0.97831 0.90914 1.40577 0.90050 1.17593 0.91156 0.92511 0.89067 1.21121 1.03462 0.92819 1.05589 1.20437 0.95977 0.96766 0.98354 1.20335 1.01421 0.94574 1.07411 1.19365 0.96355 0.95515 1.01717 1.18985 0.83169 0.82493 0.79370 1.90734 1.65914 1.30258 1.54091 1.45272 1.24035 1.10199 1.55808 1.19700 0.85105 1.07735 0.87186 1.22298 0.78619 0.76201 0.86691 1.90690 1.41734 1.35778 1.71709 1.84540 1.43284 1.72122 1.31518 1.23438 0.98200 0.92647 1.04120 1.23479 0.95419 0.97016 1.01555 1.21634 0.96413 0.96291 0.96645 0.90332 0.88537 0.88797 0.89157 0.75548 0.73337 0.86557 0.87152 0.86627 0.86738 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.73 10.97 55.55 0.61 -20.12 16 2 C 0.07 1.84 5.15 -17.35 -0.09 1.75 16 3 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -11.98 9.05 -37.73 -0.34 -12.32 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 9 C 0.10 2.59 5.56 -106.87 -0.59 2.00 16 10 C -0.21 -4.89 9.78 -38.81 -0.38 -5.27 16 11 C -0.10 -2.01 10.01 -39.72 -0.40 -2.41 16 12 C -0.22 -4.42 9.55 -38.92 -0.37 -4.79 16 13 C -0.13 -2.93 5.87 -105.04 -0.62 -3.55 16 14 C 0.57 12.34 7.67 -12.31 -0.09 12.25 16 15 O -0.53 -13.49 15.83 5.32 0.08 -13.41 16 16 N -0.70 -11.43 5.35 -49.60 -0.27 -11.69 16 17 C 0.09 1.37 2.25 -132.97 -0.30 1.07 16 18 C 0.52 8.45 7.23 36.01 0.26 8.71 16 19 O -0.51 -9.28 17.02 -18.75 -0.32 -9.60 16 20 O -0.50 -7.09 13.38 -39.26 -0.53 -7.61 16 21 C -0.15 -1.45 10.16 -26.69 -0.27 -1.72 16 22 C -0.14 -1.77 9.97 -26.69 -0.27 -2.04 16 23 C -0.09 -2.37 8.23 -38.44 -0.32 -2.69 16 24 H 0.29 6.98 8.30 -40.82 -0.34 6.64 16 25 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 26 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.09 1.48 6.39 -52.49 -0.34 1.15 16 28 H 0.41 5.56 6.87 -40.82 -0.28 5.28 16 29 H 0.41 3.81 9.10 45.56 0.41 4.23 16 30 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.12 1.51 7.67 -51.92 -0.40 1.11 16 33 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.13 3.83 5.78 -52.48 -0.30 3.53 16 LS Contribution 306.48 15.07 4.62 4.62 Total: -1.00 -32.59 306.48 -7.17 -39.76 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -2.57 Total: 13.34 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -3.78 Total: -9.00 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.34 Total: -31.81 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.76 Total: -30.62 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.59 -7.17 -39.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263134233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.276 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds