Wall clock time and date at job start Mon Mar 30 2020 01:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86797 * 119.99945 * 2 1 4 4 H 1.48496 * 109.47355 * 270.00458 * 3 2 1 5 5 H 1.48507 * 109.46883 * 30.00469 * 3 2 1 6 6 H 1.48504 * 109.47010 * 149.99890 * 3 2 1 7 7 C 1.40166 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99816 * 179.97438 * 7 2 1 9 9 C 1.41774 * 120.00217 * 359.97438 * 7 2 1 10 10 O 1.21670 * 119.99944 * 0.02562 * 9 7 2 11 11 O 1.34926 * 120.00384 * 180.02562 * 9 7 2 12 12 C 1.35859 * 118.00285 * 185.16483 * 11 9 7 13 13 C 1.38868 * 119.99381 * 245.67301 * 12 11 9 14 14 C 1.37999 * 120.00905 * 179.72228 * 13 12 11 15 15 C 1.38949 * 119.99105 * 0.53378 * 14 13 12 16 16 N 1.39952 * 120.00884 * 179.76408 * 15 14 13 17 17 C 1.34775 * 119.99936 * 215.17882 * 16 15 14 18 18 O 1.21282 * 120.00100 * 355.79746 * 17 16 15 19 19 C 1.50705 * 119.99826 * 175.79253 * 17 16 15 20 20 C 1.52993 * 117.50134 * 248.62419 * 19 17 16 21 21 C 1.52995 * 60.00053 * 252.51132 * 20 19 17 22 22 C 1.38949 * 119.98127 * 359.74528 * 15 14 13 23 23 C 1.37999 * 119.98986 * 359.97438 * 22 15 14 24 24 H 0.97000 * 120.00112 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99392 * 359.97438 * 13 12 11 26 26 H 1.08002 * 120.00456 * 180.25680 * 14 13 12 27 27 H 0.97004 * 119.99641 * 35.18755 * 16 15 14 28 28 H 1.09001 * 115.54885 * 34.33279 * 19 17 16 29 29 H 1.09000 * 117.49870 * 0.02562 * 20 19 17 30 30 H 1.09005 * 117.50281 * 145.01932 * 20 19 17 31 31 H 1.08999 * 117.50018 * 252.50754 * 21 20 19 32 32 H 1.08996 * 117.51856 * 107.48230 * 21 20 19 33 33 H 1.07997 * 119.99916 * 179.97438 * 22 15 14 34 34 H 1.08000 * 119.99159 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4877 2.0465 -1.4000 5 1 1.4376 2.6526 0.7002 6 1 3.5378 1.4401 0.7001 7 6 2.0071 -1.2139 -0.0005 8 1 3.0871 -1.2138 -0.0010 9 6 1.2983 -2.4417 -0.0005 10 8 0.0816 -2.4417 -0.0005 11 8 1.9729 -3.6102 -0.0005 12 6 1.2572 -4.7599 -0.1085 13 6 1.2254 -5.6598 0.9487 14 6 0.4939 -6.8250 0.8415 15 6 -0.2019 -7.1031 -0.3286 16 7 -0.9399 -8.2871 -0.4395 17 6 -1.0155 -8.9255 -1.6240 18 8 -0.5083 -8.4353 -2.6106 19 6 -1.7301 -10.2487 -1.7226 20 6 -0.8809 -11.4916 -1.9961 21 6 -1.7814 -10.9234 -3.0947 22 6 -0.1652 -6.2053 -1.3884 23 6 0.5619 -5.0375 -1.2782 24 1 -0.4850 0.8400 -0.0004 25 1 1.7699 -5.4457 1.8564 26 1 0.4658 -7.5228 1.6654 27 1 -1.3971 -8.6481 0.3361 28 1 -2.5971 -10.3644 -1.0721 29 1 0.1948 -11.3524 -2.1044 30 1 -1.1890 -12.4253 -1.5255 31 1 -2.6820 -11.4833 -3.3470 32 1 -1.2986 -10.4102 -3.9263 33 1 -0.7055 -6.4213 -2.2981 34 1 0.5908 -4.3398 -2.1021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274770795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:25 Heat of formation + Delta-G solvation = -88.036269 kcal Electronic energy + Delta-G solvation = -19969.753836 eV Core-core repulsion = 16639.796339 eV Total energy + Delta-G solvation = -3329.957497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.84194 -41.11108 -39.24855 -37.36976 -36.84501 -35.47150 -34.84902 -32.08300 -30.48611 -29.02446 -25.94298 -24.26436 -23.89306 -23.30748 -22.14211 -21.16449 -19.56789 -18.94740 -18.47750 -18.42064 -17.49152 -16.91529 -16.44945 -16.03302 -15.80256 -15.59185 -15.24586 -14.89052 -14.66742 -14.35899 -13.97500 -13.62407 -13.57672 -13.31051 -12.94860 -12.77608 -12.54427 -12.43132 -12.02681 -11.79082 -11.54671 -11.48322 -11.19996 -11.06301 -10.85526 -10.47684 -10.02696 -9.02732 -8.60990 -7.33206 0.06957 0.31119 1.33790 1.36003 1.38670 1.57021 1.92856 2.10351 2.13453 2.49358 2.89414 3.10695 3.26540 3.57601 3.82044 3.86672 3.90005 3.97001 4.20616 4.26522 4.42379 4.47251 4.75435 4.80242 4.90396 4.98347 5.03945 5.05812 5.17370 5.22955 5.32065 5.49381 5.69255 5.82726 6.22980 6.38521 6.51081 6.58706 7.08801 8.08479 8.34246 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.050567 B = 0.003267 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.592387 B = 8567.754458 C = 8760.956006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.028 3.972 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.260 1.260 6 H -0.245 1.245 7 C -0.533 4.533 8 H 0.096 0.904 9 C 0.461 3.539 10 O -0.595 6.595 11 O -0.344 6.344 12 C 0.075 3.925 13 C -0.123 4.123 14 C -0.106 4.106 15 C 0.123 3.877 16 N -0.649 5.649 17 C 0.531 3.469 18 O -0.570 6.570 19 C -0.195 4.195 20 C -0.136 4.136 21 C -0.155 4.155 22 C -0.112 4.112 23 C -0.139 4.139 24 H 0.289 0.711 25 H 0.148 0.852 26 H 0.181 0.819 27 H 0.432 0.568 28 H 0.163 0.837 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.025 -19.653 1.597 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.191 4.191 3 Si 0.836 3.164 4 H -0.179 1.179 5 H -0.184 1.184 6 H -0.168 1.168 7 C -0.564 4.564 8 H 0.114 0.886 9 C 0.326 3.674 10 O -0.493 6.493 11 O -0.263 6.263 12 C 0.033 3.967 13 C -0.142 4.142 14 C -0.126 4.126 15 C 0.029 3.971 16 N -0.295 5.295 17 C 0.321 3.679 18 O -0.448 6.448 19 C -0.215 4.215 20 C -0.174 4.174 21 C -0.193 4.193 22 C -0.132 4.132 23 C -0.159 4.159 24 H 0.100 0.900 25 H 0.165 0.835 26 H 0.198 0.802 27 H 0.272 0.728 28 H 0.180 0.820 29 H 0.103 0.897 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.099 0.901 33 H 0.147 0.853 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.241 -19.335 0.918 19.626 hybrid contribution -0.041 0.949 -0.067 0.953 sum -3.283 -18.386 0.851 18.696 Atomic orbital electron populations 1.70130 1.09848 1.30683 1.31308 1.27299 0.95834 1.05300 0.90642 0.84699 0.78672 0.72923 0.80105 1.17944 1.18405 1.16837 1.20207 0.95993 0.87830 1.52334 0.88580 1.20506 0.86785 0.82393 0.77715 1.90664 1.15938 1.86096 1.56613 1.84598 1.41401 1.13892 1.86388 1.19194 0.95764 0.87415 0.94357 1.21172 1.00791 0.94980 0.97260 1.21035 0.95826 0.97547 0.98179 1.17714 0.96708 0.87374 0.95332 1.43249 1.50496 1.22115 1.13682 1.20714 0.78773 0.86486 0.81900 1.90713 1.48218 1.68297 1.37587 1.22240 1.04391 0.89631 1.05263 1.23078 0.97462 0.95429 1.01390 1.23057 1.03459 1.01896 0.90866 1.20987 0.99966 0.92124 1.00130 1.21206 0.99192 0.97870 0.97600 0.90028 0.83458 0.80203 0.72817 0.81994 0.89690 0.84271 0.85063 0.90073 0.85290 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.07 11.73 21.86 0.26 -46.81 16 2 C 0.03 1.53 5.50 85.34 0.47 2.00 16 3 Si 1.02 39.49 29.56 68.60 2.03 41.52 16 4 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 5 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 6 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 7 C -0.53 -31.58 9.46 23.61 0.22 -31.35 16 8 H 0.10 5.23 7.85 -2.91 -0.02 5.20 16 9 C 0.46 29.15 7.50 68.69 0.52 29.67 16 10 O -0.59 -41.02 14.32 19.28 0.28 -40.74 16 11 O -0.34 -19.46 9.97 -1.40 -0.01 -19.48 16 12 C 0.08 3.72 5.44 22.57 0.12 3.85 16 13 C -0.12 -4.73 9.98 22.36 0.22 -4.51 16 14 C -0.11 -3.14 9.96 22.38 0.22 -2.91 16 15 C 0.12 3.97 6.30 38.19 0.24 4.21 16 16 N -0.65 -14.69 5.34 -303.37 -1.62 -16.31 16 17 C 0.53 13.22 7.45 87.66 0.65 13.87 16 18 O -0.57 -20.04 13.71 -3.04 -0.04 -20.08 16 19 C -0.19 -2.79 6.19 -11.54 -0.07 -2.86 16 20 C -0.14 -1.57 10.23 30.59 0.31 -1.26 16 21 C -0.16 -2.21 10.04 30.59 0.31 -1.91 16 22 C -0.11 -4.60 8.69 22.38 0.19 -4.40 16 23 C -0.14 -6.75 9.21 22.37 0.21 -6.54 16 24 H 0.29 15.13 8.29 -92.71 -0.77 14.36 16 25 H 0.15 5.01 8.06 -2.91 -0.02 4.99 16 26 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 27 H 0.43 5.67 8.82 -92.71 -0.82 4.85 16 28 H 0.16 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.14 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.64 7.67 -2.39 -0.02 1.62 16 33 H 0.13 5.37 6.24 -2.91 -0.02 5.36 16 34 H 0.10 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -85.42 307.51 4.83 -80.59 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.33 Total: 23.45 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 3.62 Total: -2.14 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -1.36 Total: -63.12 kcal Atomic # 8 Polarization: -80.52 SS G_CDS: 0.22 Total: -80.30 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -85.42 4.83 -80.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274770795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.445 kcal (2) G-P(sol) polarization free energy of solvation -85.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds