Wall clock time and date at job start Mon Mar 30 2020 02:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 110.50636 * 2 1 4 4 C 1.38235 * 119.99808 * 272.75411 * 3 2 1 5 5 C 1.38243 * 119.99602 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00070 * 0.07188 * 5 4 3 7 7 C 1.38234 * 119.99869 * 359.88510 * 6 5 4 8 8 C 1.38230 * 119.99865 * 92.73157 * 3 2 1 9 9 O 1.45964 * 110.69387 * 237.16714 * 2 1 3 10 10 C 1.34291 * 106.89187 * 241.36948 * 9 2 1 11 11 O 1.21460 * 123.78950 * 180.02562 * 10 9 2 12 12 N 1.33840 * 112.43116 * 359.97438 * 10 9 2 13 13 C 1.46500 * 124.34505 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.47166 * 270.00219 * 13 12 10 15 15 H 1.08003 * 119.99849 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00225 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99827 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00021 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47349 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47144 * 120.00506 * 18 16 14 21 21 H 1.48507 * 109.47045 * 240.00004 * 18 16 14 22 22 C 1.34808 * 111.31414 * 0.02562 * 12 10 9 23 23 O 1.21228 * 127.19721 * 180.02562 * 22 12 10 24 24 H 1.08995 * 109.47704 * 60.00065 * 1 2 3 25 25 H 1.08999 * 109.46667 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46812 * 299.99418 * 1 2 3 27 27 H 1.08000 * 120.00616 * 359.70324 * 4 3 2 28 28 H 1.08001 * 119.99556 * 179.97438 * 5 4 3 29 29 H 1.08005 * 119.99882 * 180.02562 * 6 5 4 30 30 H 1.08007 * 119.99474 * 180.10845 * 7 6 5 31 31 H 1.08001 * 120.00350 * 359.97438 * 8 3 2 32 32 H 1.09009 * 109.46820 * 30.00126 * 13 12 10 33 33 H 1.08997 * 109.47213 * 149.99928 * 13 12 10 34 34 H 0.97003 * 119.99994 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0579 1.4115 0.0000 4 6 2.2462 2.0790 -1.1958 5 6 2.7299 3.3740 -1.1957 6 6 3.0268 4.0009 0.0000 7 6 2.8377 3.3336 1.1958 8 6 2.3535 2.0389 1.1958 9 8 2.0458 -0.7403 -1.1473 10 6 2.7597 -1.7680 -0.6597 11 8 3.3290 -2.5851 -1.3550 12 7 2.7744 -1.7902 0.6784 13 6 3.4741 -2.7967 1.4807 14 6 2.5476 -3.9531 1.7551 15 1 1.5384 -3.9395 1.3708 16 6 2.9883 -5.0285 2.4969 17 7 4.2175 -5.0453 2.9645 18 14 1.8397 -6.4616 2.8377 19 1 0.5217 -6.2009 2.2052 20 1 2.4209 -7.7066 2.2744 21 1 1.6635 -6.6170 4.3041 22 6 2.0628 -0.7675 1.1933 23 8 1.8866 -0.5143 2.3657 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 2.0195 1.5873 -2.1303 28 1 2.8774 3.8954 -2.1300 29 1 3.4044 5.0128 0.0000 30 1 3.0681 3.8241 2.1301 31 1 2.2057 1.5176 2.1301 32 1 4.3481 -3.1528 0.9351 33 1 3.7909 -2.3530 2.4245 34 1 4.5274 -5.8017 3.4867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290015297.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:43 Heat of formation + Delta-G solvation = -88.118063 kcal Electronic energy + Delta-G solvation = -21297.244118 eV Core-core repulsion = 17967.283074 eV Total energy + Delta-G solvation = -3329.961044 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.04328 -40.45511 -39.76921 -38.65546 -36.89623 -34.86926 -34.17376 -31.88593 -30.68604 -30.18916 -26.47229 -25.68445 -24.26230 -23.79925 -22.33702 -22.09216 -19.36933 -18.74982 -18.54341 -17.97845 -17.47382 -17.16955 -16.57882 -16.33533 -15.89648 -15.71443 -15.41659 -15.27664 -14.91800 -14.43005 -14.20361 -13.82651 -13.67960 -13.60317 -13.32401 -13.24052 -12.78010 -12.74059 -12.65107 -12.23995 -12.16115 -12.02651 -11.91618 -11.20688 -10.79615 -10.76177 -9.90927 -9.88575 -8.38953 -6.54884 0.12328 0.27296 0.42186 0.98130 1.36194 1.37332 1.50002 1.59610 1.80029 2.31703 2.49867 2.77398 2.94778 3.09278 3.52729 3.82621 4.04706 4.10344 4.25935 4.36392 4.46701 4.49853 4.54785 4.61430 4.84631 4.88132 4.91168 4.94895 5.10462 5.46434 5.47428 5.49728 5.54827 5.73470 5.88311 5.98418 6.05762 6.40852 6.56346 7.15932 8.71410 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.029239 B = 0.005175 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.403767 B = 5409.470721 C = 5627.268037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.115 3.885 3 C -0.115 4.115 4 C -0.094 4.094 5 C -0.119 4.119 6 C -0.103 4.103 7 C -0.122 4.122 8 C -0.124 4.124 9 O -0.295 6.295 10 C 0.650 3.350 11 O -0.509 6.509 12 N -0.573 5.573 13 C 0.262 3.738 14 C -0.562 4.562 15 H 0.057 0.943 16 C 0.018 3.982 17 N -0.919 5.919 18 Si 0.976 3.024 19 H -0.267 1.267 20 H -0.271 1.271 21 H -0.269 1.269 22 C 0.509 3.491 23 O -0.468 6.468 24 H 0.116 0.884 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.138 0.862 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.146 0.854 31 H 0.122 0.878 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 18.566 -6.287 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.075 3.925 3 C -0.116 4.116 4 C -0.112 4.112 5 C -0.136 4.136 6 C -0.121 4.121 7 C -0.140 4.140 8 C -0.143 4.143 9 O -0.207 6.207 10 C 0.405 3.595 11 O -0.392 6.392 12 N -0.325 5.325 13 C 0.144 3.856 14 C -0.600 4.600 15 H 0.076 0.924 16 C -0.183 4.183 17 N -0.557 5.557 18 Si 0.799 3.201 19 H -0.191 1.191 20 H -0.197 1.197 21 H -0.194 1.194 22 C 0.296 3.704 23 O -0.339 6.339 24 H 0.135 0.865 25 H 0.089 0.911 26 H 0.123 0.877 27 H 0.156 0.844 28 H 0.175 0.825 29 H 0.176 0.824 30 H 0.164 0.836 31 H 0.140 0.860 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.183 18.253 -6.145 20.228 hybrid contribution -0.023 -1.350 0.521 1.447 sum -6.206 16.903 -5.624 18.864 Atomic orbital electron populations 1.22047 0.85327 1.04908 1.06990 1.22235 0.99515 0.90446 0.80327 1.19153 1.05049 0.91305 0.96044 1.21152 0.97887 0.95385 0.96801 1.21533 0.98223 0.93982 0.99905 1.21688 0.97424 1.01193 0.91757 1.21421 0.98838 0.93546 1.00156 1.21406 0.98611 0.96803 0.97434 1.87735 1.63088 1.37985 1.31856 1.18231 0.78314 0.81183 0.81750 1.91013 1.46360 1.39281 1.62569 1.47235 1.48150 1.28755 1.08368 1.19232 0.92266 0.84608 0.89460 1.21494 0.99026 1.03900 1.35591 0.92432 1.25842 0.97116 1.01036 0.94300 1.70025 1.17590 1.32645 1.35448 0.85242 0.78509 0.77933 0.78428 1.19072 1.19665 1.19405 1.21424 0.77490 0.80508 0.90933 1.90682 1.56670 1.69133 1.17460 0.86535 0.91088 0.87661 0.84433 0.82468 0.82428 0.83611 0.86009 0.94821 0.94316 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.02 71.98 0.65 -2.53 16 2 C 0.12 3.59 1.21 -12.01 -0.01 3.57 16 3 C -0.11 -3.08 4.90 -19.87 -0.10 -3.17 16 4 C -0.09 -2.04 9.38 22.27 0.21 -1.83 16 5 C -0.12 -1.95 10.05 22.27 0.22 -1.72 16 6 C -0.10 -1.61 10.05 22.27 0.22 -1.39 16 7 C -0.12 -2.42 10.05 22.27 0.22 -2.19 16 8 C -0.12 -3.29 9.18 22.27 0.20 -3.08 16 9 O -0.30 -10.44 9.96 -52.29 -0.52 -10.96 16 10 C 0.65 28.99 8.86 129.94 1.15 30.14 16 11 O -0.51 -25.86 17.49 19.73 0.35 -25.52 16 12 N -0.57 -26.75 2.59 -890.22 -2.31 -29.06 16 13 C 0.26 14.39 5.47 85.63 0.47 14.86 16 14 C -0.56 -32.51 9.39 25.60 0.24 -32.27 16 15 H 0.06 3.30 7.81 -2.91 -0.02 3.27 16 16 C 0.02 1.02 5.46 84.65 0.46 1.48 16 17 N -0.92 -54.21 13.29 21.45 0.28 -53.92 16 18 Si 0.98 44.13 29.54 68.60 2.03 46.16 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 C 0.51 20.59 6.46 87.93 0.57 21.16 16 23 O -0.47 -20.30 15.63 -2.87 -0.04 -20.34 16 24 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.10 2.21 8.14 -2.39 -0.02 2.20 16 27 H 0.14 2.74 7.69 -2.91 -0.02 2.71 16 28 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 29 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 30 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.12 3.70 5.61 -2.91 -0.02 3.68 16 32 H 0.03 1.98 7.87 -2.38 -0.02 1.96 16 33 H 0.04 2.22 8.02 -2.39 -0.02 2.21 16 34 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -70.02 303.20 5.42 -64.60 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.12 Total: 6.02 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: 4.51 Total: 23.03 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -2.02 Total: -82.98 kcal Atomic # 8 Polarization: -56.60 SS G_CDS: -0.22 Total: -56.82 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -70.02 5.42 -64.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290015297.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.516 kcal (2) G-P(sol) polarization free energy of solvation -70.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds