Wall clock time and date at job start Mon Mar 30 2020 01:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.50236 * 2 1 4 4 O 1.21286 * 120.00147 * 265.07735 * 3 2 1 5 5 N 1.34780 * 120.00068 * 85.07095 * 3 2 1 6 6 C 1.37102 * 120.00167 * 179.97438 * 5 3 2 7 7 H 1.08003 * 119.99580 * 0.02562 * 6 5 3 8 8 C 1.38951 * 120.00005 * 180.02562 * 6 5 3 9 9 N 1.31407 * 119.99738 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00040 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47225 * 90.00282 * 10 8 6 12 12 H 1.48501 * 109.47464 * 210.00245 * 10 8 6 13 13 H 1.48503 * 109.47587 * 330.00105 * 10 8 6 14 14 C 1.52912 * 109.53816 * 239.90311 * 2 1 3 15 15 C 1.50587 * 110.31896 * 289.94274 * 14 2 1 16 16 C 1.38091 * 119.91601 * 158.72057 * 15 14 2 17 17 C 1.38329 * 120.13672 * 179.84822 * 16 15 14 18 18 C 1.38380 * 120.47443 * 359.97438 * 17 16 15 19 19 C 1.38031 * 120.04410 * 0.07598 * 18 17 16 20 20 C 1.39400 * 119.65558 * 359.96933 * 19 18 17 21 21 C 1.48122 * 120.39370 * 179.61569 * 20 19 18 22 22 O 1.21473 * 121.44482 * 350.62809 * 21 20 19 23 23 O 1.35752 * 117.11649 * 170.60209 * 21 20 19 24 24 H 1.08999 * 109.47370 * 299.92395 * 1 2 3 25 25 H 1.09002 * 109.47137 * 59.92714 * 1 2 3 26 26 H 1.08998 * 109.46620 * 179.97438 * 1 2 3 27 27 H 0.97003 * 120.00371 * 0.02562 * 5 3 2 28 28 H 0.97001 * 120.00099 * 180.02562 * 9 8 6 29 29 H 1.09005 * 109.32429 * 50.19899 * 14 2 1 30 30 H 1.08991 * 109.33241 * 169.67897 * 14 2 1 31 31 H 1.07994 * 119.93218 * 359.82220 * 16 15 14 32 32 H 1.08001 * 119.76265 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.97941 * 180.02562 * 18 17 16 34 34 H 1.07999 * 120.17666 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0331 1.4205 0.0000 4 8 2.3205 1.9621 -1.0465 5 7 2.1635 2.0892 1.1629 6 6 2.6217 3.3814 1.1630 7 1 2.8778 3.8636 0.2311 8 6 2.7567 4.0706 2.3619 9 7 3.1954 5.3093 2.3619 10 14 2.3146 3.2364 3.9737 11 1 3.5123 2.5497 4.5205 12 1 1.8416 4.2552 4.9451 13 1 1.2382 2.2410 3.7370 14 6 2.0414 -0.7226 -1.2468 15 6 1.7623 -2.1990 -1.1468 16 6 1.7242 -2.9717 -2.2907 17 6 1.4713 -4.3289 -2.2039 18 6 1.2552 -4.9253 -0.9740 19 6 1.2892 -4.1656 0.1779 20 6 1.5427 -2.7974 0.0946 21 6 1.5746 -1.9651 1.3195 22 8 1.2201 -2.4059 2.3945 23 8 2.0176 -0.6886 1.1888 24 1 -0.3634 0.5126 0.8906 25 1 -0.3633 0.5150 -0.8893 26 1 -0.3632 -1.0277 -0.0005 27 1 1.9340 1.6561 1.9999 28 1 3.2900 5.7904 3.1989 29 1 1.5415 -0.3198 -2.1277 30 1 3.1156 -0.5641 -1.3406 31 1 1.8916 -2.5154 -3.2550 32 1 1.4425 -4.9275 -3.1024 33 1 1.0589 -5.9857 -0.9155 34 1 1.1204 -4.6287 1.1388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299655229.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:57 Heat of formation + Delta-G solvation = -108.418268 kcal Electronic energy + Delta-G solvation = -21252.549869 eV Core-core repulsion = 17921.708543 eV Total energy + Delta-G solvation = -3330.841327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.47999 -40.45887 -39.49441 -38.42165 -36.29030 -34.52303 -33.88878 -32.23715 -32.12760 -28.30740 -27.52008 -25.32489 -24.74662 -22.88764 -21.88723 -20.87858 -19.99555 -19.29018 -18.28748 -17.79700 -17.04770 -16.85301 -16.33164 -16.22295 -15.79339 -15.47572 -15.42449 -15.10226 -14.77724 -14.48347 -14.31474 -13.94592 -13.77353 -13.42447 -13.19027 -13.09767 -12.87453 -12.76031 -12.52419 -12.13973 -12.07498 -11.97396 -11.66178 -11.41136 -10.57577 -10.38189 -10.08617 -9.79596 -8.54063 -6.13669 -0.48625 0.30267 0.99266 1.22166 1.27164 1.34061 1.53860 2.03299 2.11104 2.50623 2.66979 2.96771 3.05582 3.25727 3.52572 3.61265 3.81402 3.91770 4.16208 4.32829 4.34588 4.40692 4.46763 4.55774 4.64724 4.82408 4.92619 4.99027 5.23060 5.33392 5.39883 5.43270 5.70910 5.81280 5.87336 6.17615 6.40032 6.69006 7.21395 7.67175 8.61790 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.029652 B = 0.005521 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.064947 B = 5070.526801 C = 5773.064709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.124 3.876 3 C 0.462 3.538 4 O -0.596 6.596 5 N -0.569 5.569 6 C -0.332 4.332 7 H 0.075 0.925 8 C 0.006 3.994 9 N -0.913 5.913 10 Si 0.943 3.057 11 H -0.260 1.260 12 H -0.260 1.260 13 H -0.249 1.249 14 C -0.089 4.089 15 C -0.037 4.037 16 C -0.125 4.125 17 C -0.066 4.066 18 C -0.129 4.129 19 C -0.058 4.058 20 C -0.197 4.197 21 C 0.528 3.472 22 O -0.484 6.484 23 O -0.377 6.377 24 H 0.068 0.932 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.387 0.613 28 H 0.284 0.716 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.157 0.843 32 H 0.169 0.831 33 H 0.165 0.835 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 -22.546 -7.433 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.084 3.916 3 C 0.248 3.752 4 O -0.482 6.482 5 N -0.206 5.206 6 C -0.461 4.461 7 H 0.093 0.907 8 C -0.196 4.196 9 N -0.552 5.552 10 Si 0.764 3.236 11 H -0.185 1.185 12 H -0.184 1.184 13 H -0.173 1.173 14 C -0.126 4.126 15 C -0.037 4.037 16 C -0.143 4.143 17 C -0.084 4.084 18 C -0.146 4.146 19 C -0.076 4.076 20 C -0.199 4.199 21 C 0.373 3.627 22 O -0.369 6.369 23 O -0.297 6.297 24 H 0.087 0.913 25 H 0.123 0.877 26 H 0.106 0.894 27 H 0.223 0.777 28 H 0.094 0.906 29 H 0.143 0.857 30 H 0.108 0.892 31 H 0.175 0.825 32 H 0.187 0.813 33 H 0.182 0.818 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.455 -22.057 -7.352 24.130 hybrid contribution 0.138 0.439 1.369 1.445 sum -6.317 -21.618 -5.983 23.303 Atomic orbital electron populations 1.22467 0.90220 1.04696 1.05436 1.22516 0.96784 0.88689 0.83591 1.19635 0.84274 0.87208 0.84060 1.90583 1.55736 1.69803 1.32032 1.42172 1.57655 1.12805 1.08016 1.19144 1.42525 0.88376 0.96036 0.90737 1.25854 0.96016 0.95974 1.01762 1.69736 1.44703 1.11130 1.29645 0.85668 0.80116 0.79261 0.78565 1.18486 1.18434 1.17297 1.20885 1.03790 0.90825 0.97102 1.19962 0.96002 0.94598 0.93139 1.21359 1.00454 0.94558 0.97900 1.21879 0.93070 0.94171 0.99273 1.21580 1.00119 1.01678 0.91255 1.21420 0.94306 0.90978 1.00928 1.19973 1.11901 0.95936 0.92099 1.21448 0.71305 0.81064 0.88919 1.90749 1.40618 1.73550 1.31967 1.87016 1.67820 1.27799 1.47047 0.91339 0.87708 0.89394 0.77729 0.90622 0.85652 0.89156 0.82496 0.81345 0.81775 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.95 8.20 71.98 0.59 -4.36 16 2 C 0.12 4.35 1.05 -11.57 -0.01 4.34 16 3 C 0.46 21.52 6.66 87.66 0.58 22.10 16 4 O -0.60 -31.32 15.85 -3.05 -0.05 -31.37 16 5 N -0.57 -28.84 5.00 -306.98 -1.54 -30.37 16 6 C -0.33 -19.58 10.16 84.04 0.85 -18.73 16 7 H 0.07 5.03 7.39 -2.91 -0.02 5.01 16 8 C 0.01 0.32 5.50 84.93 0.47 0.78 16 9 N -0.91 -54.29 13.96 21.66 0.30 -53.98 16 10 Si 0.94 41.72 27.74 68.60 1.90 43.62 16 11 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 13 H -0.25 -10.25 6.52 99.48 0.65 -9.60 16 14 C -0.09 -2.51 4.17 29.78 0.12 -2.38 16 15 C -0.04 -0.84 5.32 -19.62 -0.10 -0.94 16 16 C -0.13 -1.91 9.71 22.26 0.22 -1.70 16 17 C -0.07 -0.72 10.03 22.33 0.22 -0.50 16 18 C -0.13 -1.62 10.04 22.25 0.22 -1.39 16 19 C -0.06 -1.15 9.64 22.50 0.22 -0.94 16 20 C -0.20 -5.10 5.18 -20.06 -0.10 -5.21 16 21 C 0.53 17.86 6.73 70.45 0.47 18.33 16 22 O -0.48 -18.18 17.40 19.77 0.34 -17.84 16 23 O -0.38 -14.28 9.50 -67.37 -0.64 -14.92 16 24 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.09 2.18 6.46 -2.39 -0.02 2.16 16 27 H 0.39 18.18 5.20 -92.71 -0.48 17.70 16 28 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.13 3.10 8.10 -2.38 -0.02 3.08 16 30 H 0.09 2.77 8.10 -2.39 -0.02 2.75 16 31 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 33 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 34 H 0.14 2.63 7.77 -2.91 -0.02 2.61 16 Total: -1.00 -74.58 294.33 4.68 -69.90 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.60 Total: 25.55 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 3.75 Total: 9.41 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -1.23 Total: -84.35 kcal Atomic # 8 Polarization: -63.78 SS G_CDS: -0.34 Total: -64.13 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.90 Total: 43.62 kcal Total: -74.58 4.68 -69.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299655229.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.516 kcal (2) G-P(sol) polarization free energy of solvation -74.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds