Wall clock time and date at job start Mon Mar 30 2020 01:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86795 * 119.99974 * 2 1 4 4 H 1.48499 * 109.47027 * 274.98447 * 3 2 1 5 5 H 1.48500 * 109.47075 * 34.98313 * 3 2 1 6 6 H 1.48497 * 109.47404 * 154.98535 * 3 2 1 7 7 C 1.39933 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99801 * 151.91137 * 7 2 1 9 9 C 1.41411 * 120.00307 * 331.90764 * 7 2 1 10 10 C 1.40786 * 120.20784 * 337.88339 * 9 7 2 11 11 C 1.37634 * 119.88211 * 179.97438 * 10 9 7 12 12 C 1.38535 * 120.32486 * 359.74673 * 11 10 9 13 13 C 1.39242 * 120.42668 * 0.50975 * 12 11 10 14 14 N 1.39940 * 119.94921 * 179.76086 * 13 12 11 15 15 C 1.34767 * 120.00235 * 321.02356 * 14 13 12 16 16 O 1.21288 * 119.99797 * 354.71659 * 15 14 13 17 17 C 1.50702 * 120.00289 * 174.71699 * 15 14 13 18 18 H 1.08992 * 115.56300 * 34.29669 * 17 15 14 19 19 C 1.53004 * 117.49759 * 248.60760 * 17 15 14 20 20 C 1.53001 * 60.03350 * 252.52414 * 19 17 15 21 21 H 1.08999 * 117.50332 * 107.47680 * 20 19 17 22 22 C 1.50703 * 117.49792 * 252.48122 * 20 19 17 23 23 O 1.20822 * 120.00219 * 68.60304 * 22 20 19 24 24 O 1.34230 * 119.99815 * 248.60889 * 22 20 19 25 25 C 1.38289 * 120.10591 * 359.49200 * 13 12 11 26 26 H 0.96999 * 120.00028 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.05872 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.84165 * 180.02562 * 11 10 9 29 29 H 1.07999 * 119.78664 * 180.25414 * 12 11 10 30 30 H 0.97004 * 119.99761 * 141.02108 * 14 13 12 31 31 H 1.08997 * 117.49624 * 145.01912 * 19 17 15 32 32 H 1.09005 * 117.49954 * 0.02562 * 19 17 15 33 33 H 0.96702 * 116.99860 * 179.97438 * 24 22 20 34 34 H 1.07997 * 120.16122 * 180.23545 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3844 2.1072 -1.3948 5 1 1.4963 2.6199 0.8027 6 1 3.5885 1.4121 0.5920 7 6 2.0080 -1.2119 0.0005 8 1 2.9926 -1.2671 -0.4398 9 6 1.4259 -2.3642 0.5777 10 6 0.4025 -2.2365 1.5360 11 6 -0.1597 -3.3625 2.0931 12 6 0.2729 -4.6221 1.7117 13 6 1.2879 -4.7637 0.7690 14 7 1.7206 -6.0408 0.3947 15 6 1.8277 -7.0142 1.3205 16 8 1.6422 -6.7601 2.4919 17 6 2.1782 -8.4184 0.9004 18 1 2.8603 -8.4998 0.0543 19 6 1.0936 -9.4887 1.0389 20 6 2.2847 -9.4790 1.9992 21 1 2.1013 -9.1605 3.0254 22 6 3.3246 -10.5563 1.8289 23 8 4.0356 -10.5608 0.8520 24 8 3.4609 -11.5111 2.7625 25 6 1.8652 -3.6443 0.1979 26 1 -0.4850 0.8400 -0.0004 27 1 0.0592 -1.2567 1.8335 28 1 -0.9450 -3.2638 2.8279 29 1 -0.1771 -5.4999 2.1514 30 1 1.9433 -6.2254 -0.5312 31 1 1.0623 -10.2741 0.2838 32 1 0.1264 -9.1771 1.4335 33 1 4.1412 -12.1810 2.6093 34 1 2.6498 -3.7531 -0.5362 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313410380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:53 Heat of formation + Delta-G solvation = -104.949637 kcal Electronic energy + Delta-G solvation = -19798.428079 eV Core-core repulsion = 16467.737164 eV Total energy + Delta-G solvation = -3330.690915 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.84060 -40.99444 -39.21280 -37.60406 -36.79665 -36.10495 -34.90152 -31.80582 -30.31748 -27.26583 -27.00149 -25.26510 -23.03225 -22.67312 -21.80059 -20.89146 -19.48297 -19.43651 -18.49963 -17.61425 -17.28500 -16.79519 -16.66752 -16.60842 -16.04809 -15.67600 -15.05390 -14.80350 -14.67544 -14.11909 -13.72378 -13.52955 -13.36563 -13.21926 -12.82348 -12.64917 -12.51616 -12.31264 -12.01613 -11.93111 -11.80184 -11.67666 -11.57565 -11.16988 -10.93454 -10.66587 -9.46866 -8.81692 -8.74487 -6.33699 0.78900 0.95018 0.97695 1.38665 1.45119 1.53405 1.58380 1.79907 2.20144 2.33355 2.63476 2.70604 3.36241 3.59428 3.67614 3.78880 4.08459 4.29809 4.41781 4.59221 4.64369 4.79338 4.90458 4.97914 5.00515 5.11186 5.20993 5.31331 5.52832 5.71897 5.84312 6.03674 6.08385 6.26617 6.56725 6.68051 6.90068 6.94597 6.96494 7.22843 8.25386 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.042018 B = 0.003241 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.218296 B = 8638.177806 C = 8965.015010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.047 3.953 3 Si 0.975 3.025 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.503 4.503 8 H 0.079 0.921 9 C 0.098 3.902 10 C -0.203 4.203 11 C -0.092 4.092 12 C -0.240 4.240 13 C 0.166 3.834 14 N -0.655 5.655 15 C 0.537 3.463 16 O -0.561 6.561 17 C -0.159 4.159 18 H 0.153 0.847 19 C -0.087 4.087 20 C -0.147 4.147 21 H 0.142 0.858 22 C 0.523 3.477 23 O -0.542 6.542 24 O -0.504 6.504 25 C -0.262 4.262 26 H 0.292 0.708 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.420 0.580 31 H 0.141 0.859 32 H 0.123 0.877 33 H 0.433 0.567 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 -16.526 0.243 16.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.172 4.172 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.531 4.531 8 H 0.097 0.903 9 C 0.095 3.905 10 C -0.223 4.223 11 C -0.111 4.111 12 C -0.261 4.261 13 C 0.073 3.927 14 N -0.300 5.300 15 C 0.326 3.674 16 O -0.439 6.439 17 C -0.180 4.180 18 H 0.171 0.829 19 C -0.124 4.124 20 C -0.166 4.166 21 H 0.160 0.840 22 C 0.367 3.633 23 O -0.433 6.433 24 O -0.318 6.318 25 C -0.283 4.283 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.121 0.879 30 H 0.258 0.742 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.295 0.705 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.062 -15.982 0.847 16.137 hybrid contribution 0.865 0.493 -0.440 1.089 sum 2.927 -15.489 0.407 15.768 Atomic orbital electron populations 1.69917 1.09335 1.31184 1.32679 1.26740 0.95176 1.04528 0.90714 0.85315 0.79459 0.76118 0.79599 1.18322 1.18953 1.18448 1.19751 1.03336 0.94127 1.35914 0.90301 1.17698 0.90646 0.92371 0.89749 1.21137 1.02890 0.97044 1.01240 1.20771 0.98933 0.92511 0.98894 1.20339 1.02872 0.96480 1.06429 1.17426 0.94206 0.83584 0.97493 1.43306 1.65654 1.08485 1.12514 1.20111 0.75892 0.86376 0.85061 1.90719 1.50752 1.83314 1.19165 1.22193 1.06880 0.86805 1.02171 0.82910 1.23297 0.92620 0.97667 0.98811 1.21641 0.99477 0.95652 0.99849 0.84027 1.22056 0.81517 0.80684 0.79048 1.90727 1.45329 1.75197 1.32038 1.84466 1.59591 1.38960 1.48740 1.20842 1.07431 0.91394 1.08675 0.89715 0.88570 0.87057 0.87911 0.74185 0.84054 0.85848 0.70463 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.59 11.48 21.82 0.25 -41.34 16 2 C 0.05 2.32 4.90 85.25 0.42 2.74 16 3 Si 0.97 37.52 29.64 68.60 2.03 39.55 16 4 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.50 -27.00 8.99 23.46 0.21 -26.79 16 8 H 0.08 4.08 7.98 -2.91 -0.02 4.06 16 9 C 0.10 5.36 5.57 -21.31 -0.12 5.24 16 10 C -0.20 -10.93 8.76 22.75 0.20 -10.73 16 11 C -0.09 -4.51 10.02 22.20 0.22 -4.29 16 12 C -0.24 -11.31 8.66 22.58 0.20 -11.11 16 13 C 0.17 7.44 6.15 38.10 0.23 7.67 16 14 N -0.65 -22.36 5.32 -303.66 -1.62 -23.97 16 15 C 0.54 17.44 7.31 87.66 0.64 18.08 16 16 O -0.56 -22.86 14.33 -3.06 -0.04 -22.90 16 17 C -0.16 -3.52 5.71 -11.51 -0.07 -3.59 16 18 H 0.15 2.98 7.67 -2.39 -0.02 2.96 16 19 C -0.09 -1.36 9.94 30.60 0.30 -1.06 16 20 C -0.15 -2.95 5.82 -11.51 -0.07 -3.02 16 21 H 0.14 3.16 7.67 -2.39 -0.02 3.15 16 22 C 0.52 10.11 8.11 71.24 0.58 10.69 16 23 O -0.54 -13.26 17.02 21.98 0.37 -12.89 16 24 O -0.50 -6.91 13.42 -51.41 -0.69 -7.60 16 25 C -0.26 -12.85 9.71 22.85 0.22 -12.62 16 26 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 27 H 0.10 5.31 6.38 -2.91 -0.02 5.29 16 28 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.10 4.64 6.82 -2.91 -0.02 4.62 16 30 H 0.42 11.18 8.83 -92.71 -0.82 10.36 16 31 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.43 1.87 9.10 -74.06 -0.67 1.20 16 34 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -70.70 307.32 2.96 -67.75 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -0.32 Total: 30.20 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 2.97 Total: -28.80 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -1.37 Total: -65.32 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.36 Total: -43.39 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -70.70 2.96 -67.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313410380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.202 kcal (2) G-P(sol) polarization free energy of solvation -70.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds