Wall clock time and date at job start Mon Mar 30 2020 01:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 120.00274 * 2 1 4 4 H 1.48501 * 109.46660 * 270.00017 * 3 2 1 5 5 H 1.48501 * 109.46837 * 29.99460 * 3 2 1 6 6 H 1.48493 * 109.47271 * 149.99982 * 3 2 1 7 7 C 1.38952 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99952 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99768 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99960 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99706 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00258 * 179.97438 * 10 9 7 13 13 C 1.52995 * 109.47367 * 179.97438 * 12 10 9 14 14 S 1.81397 * 109.47346 * 179.97438 * 13 12 10 15 15 O 1.42099 * 108.57771 * 65.51586 * 14 13 12 16 16 O 1.42103 * 108.57985 * 294.48973 * 14 13 12 17 17 C 1.81398 * 101.92179 * 180.02562 * 14 13 12 18 18 C 1.54961 * 110.92525 * 66.54120 * 17 14 13 19 19 C 1.54270 * 104.16191 * 156.29525 * 18 17 14 20 20 C 1.53869 * 106.63967 * 336.44607 * 19 18 17 21 21 C 1.54268 * 106.60115 * 359.97438 * 20 19 18 22 22 H 0.97001 * 119.99767 * 359.97438 * 1 2 3 23 23 H 0.96997 * 120.00046 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.47198 * 60.00225 * 12 10 9 25 25 H 1.08997 * 109.47177 * 300.00012 * 12 10 9 26 26 H 1.09007 * 109.47009 * 59.99657 * 13 12 10 27 27 H 1.09003 * 109.47325 * 300.00505 * 13 12 10 28 28 H 1.09001 * 110.67506 * 303.23275 * 17 14 13 29 29 H 1.08997 * 110.47708 * 37.64123 * 18 17 14 30 30 H 1.09002 * 110.53308 * 274.97515 * 18 17 14 31 31 H 1.09002 * 110.03399 * 217.13605 * 19 18 17 32 32 H 1.08995 * 110.02943 * 95.75505 * 19 18 17 33 33 H 1.08999 * 110.03405 * 119.26051 * 20 19 18 34 34 H 1.09001 * 110.03705 * 240.64196 * 20 19 18 35 35 H 1.08997 * 110.48788 * 142.28685 * 21 20 19 36 36 H 1.09000 * 110.48806 * 264.79985 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0021 11 8 3.4472 -3.4210 0.0021 12 6 5.5607 -2.3707 0.0021 13 6 6.0707 -3.8131 0.0040 14 16 7.8846 -3.8132 0.0033 15 8 8.3379 -3.2531 1.2281 16 8 8.3369 -3.2567 -1.2235 17 6 8.2593 -5.5880 0.0050 18 6 7.8093 -6.2500 -1.3219 19 6 8.6942 -7.5085 -1.4351 20 6 9.9528 -7.2394 -0.5917 21 6 9.7899 -5.8260 0.0046 22 1 -0.4850 0.8401 0.0004 23 1 3.8648 -0.3633 0.0007 24 1 5.9240 -1.8561 0.8917 25 1 5.9240 -1.8577 -0.8883 26 1 5.7072 -4.3282 -0.8853 27 1 5.7073 -4.3258 0.8947 28 1 7.7923 -6.0791 0.8587 29 1 7.9896 -5.5800 -2.1626 30 1 6.7562 -6.5272 -1.2730 31 1 8.9712 -7.6779 -2.4756 32 1 8.1616 -8.3757 -1.0448 33 1 10.0306 -7.9755 0.2083 34 1 10.8407 -7.2791 -1.2228 35 1 10.1812 -5.7935 1.0214 36 1 10.2925 -5.0879 -0.6204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330512254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:10 Heat of formation + Delta-G solvation = -122.511604 kcal Electronic energy + Delta-G solvation = -19314.633466 eV Core-core repulsion = 16118.624958 eV Total energy + Delta-G solvation = -3196.008508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.54218 -38.26651 -36.97347 -36.04989 -34.22637 -32.68709 -31.68758 -29.53407 -29.16095 -26.06816 -23.54858 -21.57563 -20.69559 -19.43933 -18.84891 -18.40867 -17.41077 -16.43943 -16.31863 -15.87400 -15.24170 -14.89771 -14.85932 -14.34738 -13.87744 -13.67510 -13.30100 -12.96097 -12.82639 -12.35152 -12.13147 -12.07326 -12.01882 -11.87162 -11.67920 -11.53831 -11.38233 -11.32348 -11.09648 -10.82459 -10.77704 -10.61793 -10.33070 -10.02046 -9.64822 -8.68018 -8.25880 -6.37366 -3.89560 -0.07358 2.67616 3.01562 3.05900 3.13869 3.43545 3.62200 3.78367 4.05356 4.06470 4.25234 4.44788 4.54129 4.76308 4.84583 4.90682 4.96162 5.01299 5.15504 5.21098 5.30993 5.36725 5.47068 5.55943 5.66338 5.71825 5.75345 5.81429 5.91116 5.95258 6.02290 7.49568 8.06019 8.50591 8.86527 9.34784 9.71646 10.75208 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.039269 B = 0.003875 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.857744 B = 7223.401175 C = 7641.220736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.044 3.956 3 Si 0.878 3.122 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.584 5.584 10 C 0.455 3.545 11 O -0.577 6.577 12 C -0.128 4.128 13 C -0.578 4.578 14 S 2.412 3.588 15 O -0.941 6.941 16 O -0.938 6.938 17 C -0.581 4.581 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.104 4.104 22 H 0.275 0.725 23 H 0.373 0.627 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.139 0.861 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.442 -10.671 -1.196 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.160 4.160 3 Si 0.704 3.296 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.439 4.439 8 H 0.138 0.862 9 N -0.222 5.222 10 C 0.240 3.760 11 O -0.460 6.460 12 C -0.170 4.170 13 C -0.708 4.708 14 S 2.597 3.403 15 O -0.939 6.939 16 O -0.935 6.935 17 C -0.690 4.690 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.142 4.142 22 H 0.085 0.915 23 H 0.206 0.794 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.158 0.842 27 H 0.157 0.843 28 H 0.159 0.841 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.413 -10.521 -1.187 22.113 hybrid contribution -0.093 0.686 0.143 0.707 sum 19.320 -9.835 -1.045 21.704 Atomic orbital electron populations 1.69620 1.05694 1.27708 1.48656 1.25059 0.95526 0.98120 0.97289 0.86682 0.79921 0.83839 0.79118 1.19402 1.20001 1.19262 1.19455 0.79135 0.96743 1.48524 0.86170 1.42214 1.07667 1.06225 1.66089 1.19377 0.87606 0.84615 0.84424 1.90544 1.69520 1.30980 1.55005 1.21257 0.97607 0.93576 1.04576 1.29963 1.22372 1.05429 1.13076 1.08225 0.78867 0.77832 0.75378 1.93571 1.79532 1.75118 1.45638 1.93566 1.79516 1.74996 1.45414 1.31282 1.05831 1.24513 1.07418 1.22321 1.01045 0.98000 0.93600 1.22084 0.95636 0.97476 1.00520 1.22099 0.98387 0.95799 0.99358 1.22171 0.90338 0.99015 1.02693 0.91466 0.79366 0.88688 0.88621 0.84241 0.84340 0.84053 0.89351 0.89513 0.91131 0.91291 0.91328 0.91180 0.89820 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.41 13.96 55.50 0.77 -24.63 16 2 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 19.31 27.74 -169.99 -4.71 14.60 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.31 -8.72 10.16 -14.93 -0.15 -8.87 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.58 -13.93 5.09 -10.96 -0.06 -13.98 16 10 C 0.45 10.19 7.78 -10.99 -0.09 10.10 16 11 O -0.58 -14.91 15.56 5.55 0.09 -14.82 16 12 C -0.13 -2.11 5.71 -27.89 -0.16 -2.27 16 13 C -0.58 -7.70 4.94 37.16 0.18 -7.51 16 14 S 2.41 28.92 4.32 -107.50 -0.46 28.46 16 15 O -0.94 -14.06 18.10 -57.83 -1.05 -15.11 16 16 O -0.94 -13.60 17.45 -57.83 -1.01 -14.61 16 17 C -0.58 -5.09 3.29 -24.70 -0.08 -5.17 16 18 C -0.11 -0.92 6.05 -25.03 -0.15 -1.07 16 19 C -0.12 -0.84 6.80 -25.61 -0.17 -1.01 16 20 C -0.12 -0.81 6.80 -25.62 -0.17 -0.99 16 21 C -0.10 -0.86 6.28 -25.07 -0.16 -1.02 16 22 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 24 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 25 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.14 1.72 8.02 -51.92 -0.42 1.30 16 27 H 0.14 1.72 8.10 -51.92 -0.42 1.30 16 28 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 0.75 7.50 -51.93 -0.39 0.36 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -36.03 312.67 -8.01 -44.03 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.24 Total: 8.06 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -1.05 Total: -16.71 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.72 Total: -38.61 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.97 Total: -44.54 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Atomic # 16 Polarization: 28.92 SS G_CDS: -0.46 Total: 28.46 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.03 -8.01 -44.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330512254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.477 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds