Wall clock time and date at job start Mon Mar 30 2020 01:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 120.00274 * 2 1 4 4 H 1.48501 * 109.46660 * 270.00017 * 3 2 1 5 5 H 1.48501 * 109.46837 * 29.99460 * 3 2 1 6 6 H 1.48493 * 109.47271 * 149.99982 * 3 2 1 7 7 C 1.38952 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99952 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99768 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99960 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99706 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00258 * 179.97438 * 10 9 7 13 13 C 1.52995 * 109.47367 * 179.97438 * 12 10 9 14 14 S 1.81397 * 109.47346 * 179.97438 * 13 12 10 15 15 O 1.42099 * 108.57771 * 65.51586 * 14 13 12 16 16 O 1.42103 * 108.57985 * 294.48973 * 14 13 12 17 17 C 1.81398 * 101.92179 * 180.02562 * 14 13 12 18 18 C 1.54961 * 110.92525 * 66.54120 * 17 14 13 19 19 C 1.54270 * 104.16191 * 156.29525 * 18 17 14 20 20 C 1.53869 * 106.63967 * 336.44607 * 19 18 17 21 21 C 1.54268 * 106.60115 * 359.97438 * 20 19 18 22 22 H 0.97001 * 119.99767 * 359.97438 * 1 2 3 23 23 H 0.96997 * 120.00046 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.47198 * 60.00225 * 12 10 9 25 25 H 1.08997 * 109.47177 * 300.00012 * 12 10 9 26 26 H 1.09007 * 109.47009 * 59.99657 * 13 12 10 27 27 H 1.09003 * 109.47325 * 300.00505 * 13 12 10 28 28 H 1.09001 * 110.67506 * 303.23275 * 17 14 13 29 29 H 1.08997 * 110.47708 * 37.64123 * 18 17 14 30 30 H 1.09002 * 110.53308 * 274.97515 * 18 17 14 31 31 H 1.09002 * 110.03399 * 217.13605 * 19 18 17 32 32 H 1.08995 * 110.02943 * 95.75505 * 19 18 17 33 33 H 1.08999 * 110.03405 * 119.26051 * 20 19 18 34 34 H 1.09001 * 110.03705 * 240.64196 * 20 19 18 35 35 H 1.08997 * 110.48788 * 142.28685 * 21 20 19 36 36 H 1.09000 * 110.48806 * 264.79985 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0021 11 8 3.4472 -3.4210 0.0021 12 6 5.5607 -2.3707 0.0021 13 6 6.0707 -3.8131 0.0040 14 16 7.8846 -3.8132 0.0033 15 8 8.3379 -3.2531 1.2281 16 8 8.3369 -3.2567 -1.2235 17 6 8.2593 -5.5880 0.0050 18 6 7.8093 -6.2500 -1.3219 19 6 8.6942 -7.5085 -1.4351 20 6 9.9528 -7.2394 -0.5917 21 6 9.7899 -5.8260 0.0046 22 1 -0.4850 0.8401 0.0004 23 1 3.8648 -0.3633 0.0007 24 1 5.9240 -1.8561 0.8917 25 1 5.9240 -1.8577 -0.8883 26 1 5.7072 -4.3282 -0.8853 27 1 5.7073 -4.3258 0.8947 28 1 7.7923 -6.0791 0.8587 29 1 7.9896 -5.5800 -2.1626 30 1 6.7562 -6.5272 -1.2730 31 1 8.9712 -7.6779 -2.4756 32 1 8.1616 -8.3757 -1.0448 33 1 10.0306 -7.9755 0.2083 34 1 10.8407 -7.2791 -1.2228 35 1 10.1812 -5.7935 1.0214 36 1 10.2925 -5.0879 -0.6204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330512254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:09 Heat of formation + Delta-G solvation = -150.442905 kcal Electronic energy + Delta-G solvation = -19315.844659 eV Core-core repulsion = 16118.624958 eV Total energy + Delta-G solvation = -3197.219700 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.38837 -38.89041 -38.00753 -37.10567 -36.18161 -34.12492 -33.67445 -30.17290 -29.76365 -27.78665 -25.13146 -22.32739 -21.37253 -21.19715 -20.26031 -19.79617 -18.51733 -17.71876 -17.24159 -16.87879 -16.74559 -16.46654 -16.12659 -15.47472 -15.01423 -14.69084 -14.50398 -14.45803 -14.20188 -13.99403 -13.45030 -13.19799 -13.08877 -13.02288 -12.55153 -12.46379 -12.42514 -12.20948 -12.08145 -12.05194 -11.98822 -11.79501 -11.57004 -11.27777 -11.23094 -10.55852 -10.30921 -8.45945 -6.07540 -1.02571 1.29503 1.32904 1.42386 1.75262 1.84642 2.19657 2.47417 2.91537 2.98251 3.09898 3.35060 3.48702 3.51957 3.85936 3.92363 4.07885 4.34630 4.35193 4.40691 4.46593 4.50654 4.59145 4.75401 4.80129 4.92713 5.02923 5.07847 5.21360 5.24018 5.44534 5.49362 5.89037 6.51200 6.80147 7.31651 7.84512 8.71057 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.039269 B = 0.003875 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.857744 B = 7223.401175 C = 7641.220736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.958 3.042 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.233 1.233 7 C -0.334 4.334 8 H 0.061 0.939 9 N -0.589 5.589 10 C 0.455 3.545 11 O -0.616 6.616 12 C -0.130 4.130 13 C -0.589 4.589 14 S 2.430 3.570 15 O -0.971 6.971 16 O -0.965 6.965 17 C -0.561 4.561 18 C -0.122 4.122 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.116 4.116 22 H 0.281 0.719 23 H 0.391 0.609 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.278 -10.489 -1.099 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.210 4.210 3 Si 0.778 3.222 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.157 1.157 7 C -0.463 4.463 8 H 0.079 0.921 9 N -0.229 5.229 10 C 0.242 3.758 11 O -0.502 6.502 12 C -0.171 4.171 13 C -0.717 4.717 14 S 2.617 3.383 15 O -0.969 6.969 16 O -0.962 6.962 17 C -0.674 4.674 18 C -0.160 4.160 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.154 4.154 22 H 0.090 0.910 23 H 0.227 0.773 24 H 0.136 0.864 25 H 0.138 0.862 26 H 0.164 0.836 27 H 0.163 0.837 28 H 0.185 0.815 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 22.249 -10.306 -1.089 24.544 hybrid contribution -0.980 0.432 0.095 1.075 sum 21.269 -9.874 -0.994 23.470 Atomic orbital electron populations 1.69786 1.08027 1.29401 1.49676 1.26082 0.96459 1.02609 0.95817 0.85452 0.79564 0.77013 0.80142 1.17971 1.19671 1.15679 1.19062 0.81270 0.95201 1.50762 0.92087 1.42089 1.06102 1.07674 1.67049 1.20530 0.90215 0.83466 0.81541 1.90521 1.71323 1.32467 1.55906 1.21348 0.92385 0.96442 1.06931 1.30091 1.24116 1.03674 1.13859 1.07627 0.77345 0.79316 0.73986 1.93529 1.79507 1.77155 1.46661 1.93526 1.79423 1.76956 1.46304 1.31124 1.06812 1.20389 1.09055 1.22478 1.02083 0.98549 0.92912 1.22134 0.95546 0.97030 1.01181 1.22135 0.98671 0.94936 0.99818 1.22358 0.89545 0.99961 1.03554 0.90964 0.77344 0.86367 0.86177 0.83627 0.83683 0.81516 0.89905 0.88556 0.90493 0.90323 0.90114 0.90311 0.88756 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 13.96 21.66 0.30 -55.27 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 3 Si 0.96 38.95 27.74 68.60 1.90 40.85 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.23 -8.13 6.52 99.48 0.65 -7.48 16 7 C -0.33 -19.50 10.16 84.04 0.85 -18.64 16 8 H 0.06 4.19 7.39 -2.91 -0.02 4.17 16 9 N -0.59 -28.02 5.09 -306.98 -1.56 -29.59 16 10 C 0.46 20.39 7.78 87.65 0.68 21.07 16 11 O -0.62 -32.74 15.56 -3.07 -0.05 -32.79 16 12 C -0.13 -4.04 5.71 29.84 0.17 -3.87 16 13 C -0.59 -14.80 4.94 71.98 0.36 -14.44 16 14 S 2.43 53.85 4.32 -56.49 -0.24 53.61 16 15 O -0.97 -27.31 18.10 -127.37 -2.31 -29.62 16 16 O -0.96 -26.56 17.45 -127.37 -2.22 -28.78 16 17 C -0.56 -8.37 3.29 31.91 0.11 -8.26 16 18 C -0.12 -1.72 6.05 31.70 0.19 -1.53 16 19 C -0.12 -1.36 6.80 31.32 0.21 -1.14 16 20 C -0.12 -1.25 6.80 31.32 0.21 -1.04 16 21 C -0.12 -1.61 6.28 31.67 0.20 -1.41 16 22 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 23 H 0.39 15.58 5.76 -92.71 -0.53 15.04 16 24 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 25 H 0.12 3.15 8.14 -2.39 -0.02 3.14 16 26 H 0.15 3.43 8.02 -2.39 -0.02 3.41 16 27 H 0.14 3.41 8.10 -2.39 -0.02 3.39 16 28 H 0.17 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 1.27 7.50 -2.39 -0.02 1.25 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.10 8.05 -2.39 -0.02 1.09 16 Total: -1.00 -81.58 312.67 -0.24 -81.82 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.49 Total: 29.12 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 3.45 Total: -29.36 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -1.26 Total: -84.86 kcal Atomic # 8 Polarization: -86.61 SS G_CDS: -4.58 Total: -91.19 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 1.90 Total: 40.85 kcal Atomic # 16 Polarization: 53.85 SS G_CDS: -0.24 Total: 53.61 kcal Total: -81.58 -0.24 -81.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330512254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.618 kcal (2) G-P(sol) polarization free energy of solvation -81.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds