Wall clock time and date at job start Mon Mar 30 2020 01:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54122 * 291.62548 * 11 10 9 13 13 O 1.42102 * 110.54223 * 68.37613 * 11 10 9 14 14 N 1.65600 * 104.45074 * 180.02562 * 11 10 9 15 15 C 1.46503 * 120.00062 * 64.99734 * 14 11 10 16 16 H 1.09001 * 110.34662 * 22.71215 * 15 14 11 17 17 C 1.51097 * 110.38822 * 260.30672 * 15 14 11 18 18 C 1.30530 * 111.10666 * 257.62534 * 17 15 14 19 19 C 1.51098 * 111.10063 * 359.97438 * 18 17 15 20 20 H 1.08997 * 110.48511 * 224.70435 * 19 18 17 21 21 C 1.52999 * 110.38886 * 102.37665 * 19 18 17 22 22 O 1.42899 * 109.47269 * 69.69541 * 21 19 18 23 23 C 1.54628 * 110.38607 * 145.00105 * 15 14 11 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 29 29 H 0.96993 * 120.00181 * 245.00479 * 14 11 10 30 30 H 1.08002 * 124.45066 * 77.60452 * 17 15 14 31 31 H 1.07999 * 124.45270 * 179.97438 * 18 17 15 32 32 H 1.08999 * 109.47320 * 189.69623 * 21 19 18 33 33 H 1.09004 * 109.47066 * 309.69416 * 21 19 18 34 34 H 0.96693 * 114.00005 * 180.02562 * 22 21 19 35 35 H 1.09005 * 111.03823 * 212.21144 * 23 15 14 36 36 H 1.08997 * 111.04220 * 336.10899 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3384 -5.2331 -0.0002 12 8 0.6640 -5.4201 1.2365 13 8 0.6648 -5.4194 -1.2375 14 7 2.5205 -6.3927 0.0006 15 6 3.4181 -6.5230 1.1510 16 1 2.9562 -6.0980 2.0422 17 6 4.7393 -5.8471 0.8671 18 6 5.6607 -6.7224 0.5692 19 6 5.1076 -8.1281 0.6054 20 1 5.7954 -8.7953 1.1249 21 6 4.8455 -8.6346 -0.8143 22 8 6.0910 -8.8492 -1.4810 23 6 3.7790 -8.0079 1.3873 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8905 29 1 2.6188 -6.9857 -0.7607 30 1 4.9003 -4.7798 0.9052 31 1 6.6839 -6.4746 0.3284 32 1 4.2913 -9.5721 -0.7691 33 1 4.2628 -7.8941 -1.3624 34 1 6.0011 -9.1711 -2.3883 35 1 3.9299 -8.2100 2.4478 36 1 3.0175 -8.6668 0.9702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331298440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:34 Heat of formation + Delta-G solvation = -114.405923 kcal Electronic energy + Delta-G solvation = -19615.040107 eV Core-core repulsion = 16419.383088 eV Total energy + Delta-G solvation = -3195.657019 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.75252 -36.71802 -36.49439 -35.44843 -33.89681 -33.32801 -31.17829 -29.97944 -27.87418 -25.60039 -24.23164 -21.69433 -20.78782 -19.18489 -18.80340 -17.80995 -17.39131 -16.80918 -16.31107 -15.63875 -15.38931 -15.02426 -14.77969 -14.54936 -14.24869 -13.40979 -12.75375 -12.74639 -12.48949 -12.13521 -11.88835 -11.73827 -11.67379 -11.60625 -11.51094 -11.39843 -11.09594 -10.97412 -10.95183 -10.40623 -10.38773 -10.20770 -9.84048 -9.50808 -9.27805 -9.04323 -8.50929 -6.12803 -4.18209 0.78528 2.05196 3.21398 3.25059 3.32431 3.35761 3.86538 4.23264 4.30466 4.37618 4.53251 4.69803 4.80818 4.90495 5.07440 5.20095 5.20426 5.22685 5.38477 5.45987 5.61021 5.70062 5.72217 5.77343 5.88508 6.12583 6.35285 6.50048 6.68914 7.07098 7.30208 7.33731 7.36234 7.80459 8.17362 8.85455 9.46667 10.98303 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.024201 B = 0.004603 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.716560 B = 6081.325413 C = 6660.024006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.587 4.587 11 S 2.590 3.410 12 O -0.966 6.966 13 O -0.969 6.969 14 N -1.116 6.116 15 C 0.166 3.834 16 H 0.104 0.896 17 C -0.186 4.186 18 C -0.132 4.132 19 C -0.073 4.073 20 H 0.087 0.913 21 C 0.084 3.916 22 O -0.572 6.572 23 C -0.122 4.122 24 H 0.264 0.736 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.408 0.592 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.379 0.621 35 H 0.091 0.909 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.798 -17.065 0.324 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.721 4.721 11 S 2.688 3.312 12 O -0.956 6.956 13 O -0.959 6.959 14 N -0.872 5.872 15 C 0.059 3.941 16 H 0.122 0.878 17 C -0.206 4.206 18 C -0.151 4.151 19 C -0.091 4.091 20 H 0.105 0.895 21 C 0.007 3.993 22 O -0.378 6.378 23 C -0.161 4.161 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.242 0.758 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.226 0.774 35 H 0.109 0.891 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.866 -16.848 1.069 19.554 hybrid contribution 0.931 0.914 -0.957 1.618 sum 10.798 -15.934 0.112 19.248 Atomic orbital electron populations 1.69962 1.06118 1.27078 1.49705 1.25066 0.94958 0.99538 0.94923 0.86422 0.79930 0.83217 0.77759 1.19660 1.20814 1.20798 1.21037 0.93081 0.89748 1.51964 0.92000 1.18972 0.92710 0.90626 0.98866 1.30467 1.13610 1.17909 1.10100 1.05625 0.74708 0.76745 0.74139 1.93542 1.71390 1.85009 1.45697 1.93549 1.71777 1.85379 1.45234 1.55961 1.51960 1.52123 1.27137 1.20527 0.88936 0.95856 0.88822 0.87810 1.23867 0.94988 1.00207 1.01525 1.23189 0.99350 0.94022 0.98555 1.21047 0.97225 0.96152 0.94694 0.89496 1.22284 0.85634 0.98779 0.92652 1.86468 1.30679 1.89530 1.31100 1.22734 0.96323 0.95814 1.01232 0.92592 0.94892 0.94819 0.86105 0.86247 0.75819 0.84775 0.85479 0.93355 0.93251 0.77414 0.89066 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -11.07 6.01 37.16 0.22 -10.85 16 11 S 2.59 45.65 5.44 -107.50 -0.58 45.07 16 12 O -0.97 -19.75 17.43 -57.54 -1.00 -20.75 16 13 O -0.97 -19.97 18.08 -57.54 -1.04 -21.01 16 14 N -1.12 -14.20 5.39 -4.98 -0.03 -14.23 16 15 C 0.17 1.87 3.46 -68.03 -0.24 1.64 16 16 H 0.10 1.21 7.54 -51.93 -0.39 0.82 16 17 C -0.19 -2.01 10.41 -35.70 -0.37 -2.39 16 18 C -0.13 -1.32 9.97 -35.70 -0.36 -1.67 16 19 C -0.07 -0.65 3.18 -90.72 -0.29 -0.94 16 20 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 21 C 0.08 0.71 6.30 37.16 0.23 0.94 16 22 O -0.57 -5.06 13.54 -35.23 -0.48 -5.53 16 23 C -0.12 -1.08 6.36 -25.02 -0.16 -1.24 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 28 H 0.12 1.99 7.93 -51.92 -0.41 1.58 16 29 H 0.41 4.43 7.18 -34.47 -0.25 4.18 16 30 H 0.13 1.44 7.85 -52.49 -0.41 1.03 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.05 0.33 8.10 -51.93 -0.42 -0.09 16 33 H 0.05 0.42 6.54 -51.93 -0.34 0.08 16 34 H 0.38 1.75 9.12 45.56 0.42 2.17 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.70 7.81 -51.93 -0.41 0.29 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -35.71 316.15 -8.45 -44.15 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -4.29 Total: 4.10 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: -1.50 Total: -27.00 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.71 Total: -39.93 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -2.52 Total: -47.29 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 45.65 SS G_CDS: -0.58 Total: 45.07 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.71 -8.45 -44.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331298440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.255 kcal (2) G-P(sol) polarization free energy of solvation -35.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds