Wall clock time and date at job start Mon Mar 30 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54122 * 291.62548 * 11 10 9 13 13 O 1.42102 * 110.54223 * 68.37613 * 11 10 9 14 14 N 1.65600 * 104.45074 * 180.02562 * 11 10 9 15 15 C 1.46503 * 120.00062 * 64.99734 * 14 11 10 16 16 H 1.09001 * 110.34662 * 22.71215 * 15 14 11 17 17 C 1.51097 * 110.38822 * 260.30672 * 15 14 11 18 18 C 1.30530 * 111.10666 * 257.62534 * 17 15 14 19 19 C 1.51098 * 111.10063 * 359.97438 * 18 17 15 20 20 H 1.08997 * 110.48511 * 224.70435 * 19 18 17 21 21 C 1.52999 * 110.38886 * 102.37665 * 19 18 17 22 22 O 1.42899 * 109.47269 * 69.69541 * 21 19 18 23 23 C 1.54628 * 110.38607 * 145.00105 * 15 14 11 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 29 29 H 0.96993 * 120.00181 * 245.00479 * 14 11 10 30 30 H 1.08002 * 124.45066 * 77.60452 * 17 15 14 31 31 H 1.07999 * 124.45270 * 179.97438 * 18 17 15 32 32 H 1.08999 * 109.47320 * 189.69623 * 21 19 18 33 33 H 1.09004 * 109.47066 * 309.69416 * 21 19 18 34 34 H 0.96693 * 114.00005 * 180.02562 * 22 21 19 35 35 H 1.09005 * 111.03823 * 212.21144 * 23 15 14 36 36 H 1.08997 * 111.04220 * 336.10899 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3384 -5.2331 -0.0002 12 8 0.6640 -5.4201 1.2365 13 8 0.6648 -5.4194 -1.2375 14 7 2.5205 -6.3927 0.0006 15 6 3.4181 -6.5230 1.1510 16 1 2.9562 -6.0980 2.0422 17 6 4.7393 -5.8471 0.8671 18 6 5.6607 -6.7224 0.5692 19 6 5.1076 -8.1281 0.6054 20 1 5.7954 -8.7953 1.1249 21 6 4.8455 -8.6346 -0.8143 22 8 6.0910 -8.8492 -1.4810 23 6 3.7790 -8.0079 1.3873 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8905 29 1 2.6188 -6.9857 -0.7607 30 1 4.9003 -4.7798 0.9052 31 1 6.6839 -6.4746 0.3284 32 1 4.2913 -9.5721 -0.7691 33 1 4.2628 -7.8941 -1.3624 34 1 6.0011 -9.1711 -2.3883 35 1 3.9299 -8.2100 2.4478 36 1 3.0175 -8.6668 0.9702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331298440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:33 Heat of formation + Delta-G solvation = -143.756588 kcal Electronic energy + Delta-G solvation = -19616.312848 eV Core-core repulsion = 16419.383088 eV Total energy + Delta-G solvation = -3196.929760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53406 -38.15260 -37.28835 -37.01328 -35.89156 -34.33241 -33.12759 -30.71793 -28.68105 -27.58062 -24.97299 -23.60232 -21.57482 -20.48833 -19.65343 -19.19162 -18.44565 -18.12074 -17.59470 -17.00732 -16.65715 -16.51471 -16.15716 -15.52597 -15.14481 -15.01593 -14.48693 -13.80263 -13.65967 -13.59032 -13.20154 -13.12292 -12.96032 -12.93103 -12.79883 -12.70801 -12.41759 -12.25973 -12.14433 -12.05499 -11.83567 -11.72419 -11.18437 -10.81027 -10.65217 -10.42416 -10.07457 -8.25854 -6.39514 -0.67322 1.20093 1.41067 1.41394 1.54705 1.97739 2.38075 2.80524 3.07851 3.24044 3.29683 3.56981 3.81255 3.98191 4.09253 4.13207 4.18042 4.40983 4.42165 4.53713 4.67550 4.76015 4.79124 4.92159 5.04889 5.13276 5.28220 5.28869 5.33134 5.58338 5.69155 5.88098 6.06803 6.12743 6.74358 6.91728 7.30700 8.86681 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.024201 B = 0.004603 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.716560 B = 6081.325413 C = 6660.024006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.973 3.027 4 H -0.256 1.256 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.075 0.925 9 C 0.020 3.980 10 C -0.586 4.586 11 S 2.618 3.382 12 O -0.995 6.995 13 O -1.000 7.000 14 N -1.096 6.096 15 C 0.155 3.845 16 H 0.098 0.902 17 C -0.202 4.202 18 C -0.122 4.122 19 C -0.074 4.074 20 H 0.095 0.905 21 C 0.081 3.919 22 O -0.590 6.590 23 C -0.116 4.116 24 H 0.267 0.733 25 H 0.005 0.995 26 H 0.008 0.992 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.420 0.580 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.396 0.604 35 H 0.107 0.893 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.989 -17.946 0.384 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.180 1.180 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.575 4.575 8 H 0.093 0.907 9 C -0.019 4.019 10 C -0.718 4.718 11 S 2.715 3.285 12 O -0.985 6.985 13 O -0.991 6.991 14 N -0.856 5.856 15 C 0.048 3.952 16 H 0.116 0.884 17 C -0.222 4.222 18 C -0.142 4.142 19 C -0.092 4.092 20 H 0.113 0.887 21 C 0.003 3.997 22 O -0.398 6.398 23 C -0.155 4.155 24 H 0.076 0.924 25 H 0.024 0.976 26 H 0.026 0.974 27 H 0.158 0.842 28 H 0.160 0.840 29 H 0.257 0.743 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.245 0.755 35 H 0.126 0.874 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.072 -17.738 1.109 21.485 hybrid contribution 0.307 1.080 -0.979 1.490 sum 12.379 -16.658 0.130 20.754 Atomic orbital electron populations 1.70105 1.08056 1.28227 1.51030 1.26099 0.95830 1.03819 0.94429 0.85275 0.79154 0.78103 0.77772 1.17983 1.20443 1.20360 1.21540 0.93956 0.90772 1.51277 0.90652 1.18829 0.93608 0.93120 0.96347 1.30369 1.12684 1.16561 1.12218 1.04491 0.74704 0.76547 0.72738 1.93503 1.72659 1.85408 1.46912 1.93499 1.73245 1.85813 1.46517 1.55478 1.51316 1.50488 1.28340 1.20808 0.88672 0.97978 0.87718 0.88370 1.23820 0.94915 1.00333 1.03136 1.23366 0.99350 0.94603 0.96854 1.21089 0.97227 0.95552 0.95326 0.88695 1.22327 0.85654 0.99539 0.92130 1.86420 1.31046 1.89755 1.32588 1.22775 0.96492 0.93841 1.02438 0.92417 0.97635 0.97410 0.84181 0.84023 0.74292 0.85009 0.85074 0.91621 0.93648 0.75475 0.87419 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 3 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.54 -29.65 9.11 25.60 0.23 -29.41 16 8 H 0.08 3.85 7.74 -2.91 -0.02 3.82 16 9 C 0.02 1.03 4.98 29.85 0.15 1.18 16 10 C -0.59 -21.95 6.01 71.98 0.43 -21.52 16 11 S 2.62 91.92 5.44 -56.49 -0.31 91.61 16 12 O -1.00 -40.87 17.43 -127.65 -2.22 -43.10 16 13 O -1.00 -41.45 18.08 -127.65 -2.31 -43.76 16 14 N -1.10 -26.18 5.39 -169.66 -0.91 -27.09 16 15 C 0.15 3.20 3.46 44.93 0.16 3.35 16 16 H 0.10 2.16 7.54 -2.39 -0.02 2.15 16 17 C -0.20 -3.99 10.41 26.26 0.27 -3.71 16 18 C -0.12 -2.16 9.97 26.26 0.26 -1.90 16 19 C -0.07 -1.10 3.18 -10.86 -0.03 -1.14 16 20 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 21 C 0.08 1.14 6.30 71.98 0.45 1.59 16 22 O -0.59 -8.93 13.54 -148.98 -2.02 -10.94 16 23 C -0.12 -1.74 6.36 31.70 0.20 -1.53 16 24 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 25 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.14 4.65 8.14 -2.39 -0.02 4.64 16 28 H 0.14 4.60 7.93 -2.39 -0.02 4.58 16 29 H 0.42 8.28 7.18 -96.75 -0.69 7.58 16 30 H 0.13 2.62 7.85 -2.91 -0.02 2.60 16 31 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.07 0.70 8.10 -2.39 -0.02 0.68 16 33 H 0.05 0.66 6.54 -2.38 -0.02 0.64 16 34 H 0.40 2.74 9.12 -74.06 -0.68 2.06 16 35 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.09 1.25 7.81 -2.39 -0.02 1.24 16 Total: -1.00 -77.18 316.15 -3.15 -80.33 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.28 Total: 17.07 kcal Atomic # 6 Polarization: -55.41 SS G_CDS: 2.59 Total: -52.83 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -0.63 Total: -83.68 kcal Atomic # 8 Polarization: -91.25 SS G_CDS: -6.55 Total: -97.81 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 91.92 SS G_CDS: -0.31 Total: 91.61 kcal Total: -77.18 -3.15 -80.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331298440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.430 kcal (2) G-P(sol) polarization free energy of solvation -77.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds