Wall clock time and date at job start Mon Mar 30 2020 02:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47173 * 2 1 4 4 H 1.09001 * 109.46979 * 307.25506 * 3 2 1 5 5 C 1.50701 * 109.47201 * 187.25920 * 3 2 1 6 6 H 1.08006 * 119.99486 * 239.99902 * 5 3 2 7 7 C 1.37873 * 120.00226 * 59.99664 * 5 3 2 8 8 N 1.31513 * 120.00260 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99757 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47046 * 60.00516 * 9 7 5 11 11 H 1.48498 * 109.46806 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47267 * 300.00186 * 9 7 5 13 13 N 1.46494 * 109.47228 * 67.25192 * 3 2 1 14 14 C 1.34773 * 120.00448 * 277.01253 * 13 3 2 15 15 O 1.21276 * 119.99965 * 358.91623 * 14 13 3 16 16 C 1.50703 * 120.00256 * 178.90925 * 14 13 3 17 17 S 1.81393 * 115.55208 * 297.97551 * 16 14 13 18 18 C 1.81400 * 101.92192 * 305.57763 * 17 16 14 19 19 O 1.42099 * 108.58183 * 60.06288 * 17 16 14 20 20 O 1.42100 * 108.57917 * 191.09245 * 17 16 14 21 21 C 1.53003 * 117.49801 * 152.26375 * 16 14 13 22 22 C 1.53005 * 117.49621 * 83.64108 * 16 14 13 23 23 H 1.08988 * 109.47123 * 296.25468 * 1 2 3 24 24 H 1.09003 * 109.46708 * 56.25817 * 1 2 3 25 25 H 1.09002 * 109.47270 * 176.24923 * 1 2 3 26 26 H 1.09000 * 109.47148 * 120.00036 * 2 1 3 27 27 H 1.09003 * 109.47204 * 239.99910 * 2 1 3 28 28 H 0.96994 * 120.00276 * 180.02562 * 8 7 5 29 29 H 0.97004 * 119.99819 * 97.01464 * 13 3 2 30 30 H 1.08999 * 109.47361 * 69.42230 * 18 17 16 31 31 H 1.09006 * 109.47611 * 189.42761 * 18 17 16 32 32 H 1.09000 * 109.47091 * 309.42470 * 18 17 16 33 33 H 1.08999 * 117.49633 * 359.97438 * 21 16 14 34 34 H 1.08994 * 117.49728 * 145.02669 * 21 16 14 35 35 H 1.08995 * 117.49640 * 214.98067 * 22 16 14 36 36 H 1.09004 * 117.49724 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5746 1.9924 -0.8180 5 6 3.5363 1.4463 -0.1795 6 1 4.1701 1.8808 0.5794 7 6 4.0961 0.8950 -1.3125 8 7 3.3244 0.3663 -2.2369 9 14 5.9509 0.8992 -1.5346 10 1 6.5845 0.1495 -0.4202 11 1 6.2963 0.2516 -2.8255 12 1 6.4464 2.2990 -1.5342 13 7 1.6993 2.0809 1.2737 14 6 0.4733 2.6102 1.4556 15 8 -0.3415 2.5754 0.5579 16 6 0.1146 3.2451 2.7744 17 16 0.1506 2.1383 4.2111 18 6 -0.9480 0.7968 3.6783 19 8 1.4659 1.6183 4.3493 20 8 -0.4508 2.8057 5.3120 21 6 -0.9411 4.3525 2.7615 22 6 0.5305 4.7011 2.9938 23 1 -0.3633 0.4546 0.9215 24 1 -0.3633 0.5708 -0.8546 25 1 -0.3634 -1.0255 -0.0672 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.7182 -0.0218 -3.0338 29 1 2.3562 2.1227 1.9863 30 1 -0.4695 0.2310 2.8789 31 1 -1.1495 0.1356 4.5212 32 1 -1.8854 1.2176 3.3145 33 1 -1.3758 4.6220 1.7990 34 1 -1.6143 4.4160 3.6163 35 1 0.8254 4.9939 4.0014 36 1 1.0639 5.1995 2.1843 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331813837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:33 Heat of formation + Delta-G solvation = -81.886043 kcal Electronic energy + Delta-G solvation = -20613.477277 eV Core-core repulsion = 17419.230425 eV Total energy + Delta-G solvation = -3194.246852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.61283 -37.29772 -36.43011 -36.10159 -34.97898 -32.43583 -31.01281 -29.62767 -27.24965 -24.71193 -22.95839 -22.66635 -20.81079 -19.55670 -18.85663 -17.97499 -16.49797 -16.21261 -16.00334 -15.61505 -15.38194 -14.61143 -14.40362 -14.15243 -13.34715 -13.24076 -13.18909 -12.69883 -12.32357 -12.19849 -12.09716 -11.85566 -11.73217 -11.59147 -11.30190 -11.18809 -11.09003 -10.90087 -10.86727 -10.45227 -10.39062 -10.22446 -9.70925 -9.25276 -9.11703 -8.54653 -7.97753 -6.16404 -4.25811 -0.09622 2.45864 2.94614 3.23266 3.25169 3.29992 3.32707 3.54067 3.76266 4.10054 4.32881 4.42434 4.58120 4.79089 4.99257 5.01998 5.15458 5.35825 5.51653 5.66146 5.67317 5.90089 6.29586 6.33707 6.53779 6.92323 7.08413 7.23621 7.30390 7.54578 7.66590 7.81540 8.10690 8.52024 8.68599 8.94422 9.41115 10.88933 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.025053 B = 0.005912 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.371606 B = 4734.869771 C = 4883.372043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.697 5.697 14 C 0.548 3.452 15 O -0.529 6.529 16 C -0.674 4.674 17 S 2.455 3.545 18 C -0.651 4.651 19 O -0.923 6.923 20 O -0.939 6.939 21 C -0.098 4.098 22 C -0.105 4.105 23 H 0.035 0.965 24 H 0.054 0.946 25 H 0.026 0.974 26 H 0.035 0.965 27 H 0.104 0.896 28 H 0.266 0.734 29 H 0.398 0.602 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.609 4.039 10.591 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.730 3.270 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.345 5.345 14 C 0.328 3.672 15 O -0.407 6.407 16 C -0.765 4.765 17 S 2.635 3.365 18 C -0.801 4.801 19 O -0.920 6.920 20 O -0.936 6.936 21 C -0.136 4.136 22 C -0.143 4.143 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.232 0.768 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.684 3.991 10.501 13.610 hybrid contribution 0.916 -0.273 -0.613 1.136 sum -6.767 3.718 9.888 12.546 Atomic orbital electron populations 1.21939 0.98441 0.98444 1.01056 1.22009 0.92567 0.99813 1.02825 1.18891 0.95107 0.89434 0.79630 0.93107 1.21197 0.90712 1.39935 1.05539 0.91843 1.24869 0.98619 0.94670 0.95414 1.69871 1.35036 1.38078 1.09074 0.86490 0.84663 0.78397 0.77485 1.20017 1.21126 1.20160 1.46661 1.11940 1.56168 1.19771 1.18270 0.83750 0.79487 0.85644 1.90674 1.49503 1.58400 1.42073 1.32045 1.19308 1.07368 1.17777 1.06840 0.76765 0.77409 0.75502 1.30230 1.17353 1.19038 1.13520 1.93617 1.35292 1.78327 1.84803 1.93570 1.78983 1.74427 1.46596 1.22906 0.91561 0.93460 1.05691 1.22891 0.98851 0.87829 1.04744 0.94610 0.92732 0.95504 0.94596 0.87837 0.92447 0.76786 0.84511 0.85058 0.84897 0.86092 0.86273 0.86773 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.44 37.16 0.31 -2.65 16 2 C -0.13 -3.13 5.46 -26.73 -0.15 -3.28 16 3 C 0.27 6.62 2.23 -69.09 -0.15 6.47 16 4 H 0.05 1.42 7.62 -51.93 -0.40 1.02 16 5 C -0.54 -14.01 8.73 -34.44 -0.30 -14.31 16 6 H 0.06 1.61 7.72 -52.48 -0.41 1.20 16 7 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 8 N -0.88 -24.23 11.29 55.43 0.63 -23.60 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.70 -14.26 5.08 -54.94 -0.28 -14.54 16 14 C 0.55 10.09 5.44 -10.99 -0.06 10.03 16 15 O -0.53 -11.15 13.54 5.56 0.08 -11.07 16 16 C -0.67 -9.35 2.34 -91.77 -0.22 -9.57 16 17 S 2.46 32.43 5.43 -107.50 -0.58 31.84 16 18 C -0.65 -7.23 10.27 101.05 1.04 -6.19 16 19 O -0.92 -15.07 17.49 -57.83 -1.01 -16.09 16 20 O -0.94 -13.29 17.53 -57.83 -1.01 -14.31 16 21 C -0.10 -1.09 9.63 -26.73 -0.26 -1.35 16 22 C -0.10 -1.19 9.99 -26.72 -0.27 -1.46 16 23 H 0.03 0.68 4.17 -51.94 -0.22 0.47 16 24 H 0.05 1.22 7.75 -51.93 -0.40 0.82 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.10 2.69 5.91 -51.93 -0.31 2.39 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.40 7.66 7.89 -40.82 -0.32 7.34 16 30 H 0.14 1.71 6.53 -51.92 -0.34 1.37 16 31 H 0.13 1.13 8.14 -51.92 -0.42 0.71 16 32 H 0.13 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.12 1.40 7.94 -51.93 -0.41 0.98 16 34 H 0.12 1.05 7.83 -51.93 -0.41 0.64 16 35 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -31.96 309.54 -7.56 -39.52 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -4.88 Total: 8.71 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -0.14 Total: -20.62 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.35 Total: -38.14 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.95 Total: -41.47 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 32.43 SS G_CDS: -0.58 Total: 31.84 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.96 -7.56 -39.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331813837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.361 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds