Wall clock time and date at job start Mon Mar 30 2020 02:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46898 * 2 1 4 4 H 1.09002 * 109.47671 * 55.00168 * 3 2 1 5 5 C 1.50704 * 109.47147 * 175.00345 * 3 2 1 6 6 H 1.08001 * 120.00526 * 120.00037 * 5 3 2 7 7 C 1.37876 * 119.99639 * 299.99412 * 5 3 2 8 8 N 1.31520 * 120.00219 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00020 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47068 * 90.00457 * 9 7 5 11 11 H 1.48504 * 109.47394 * 210.00347 * 9 7 5 12 12 H 1.48504 * 109.47071 * 330.00523 * 9 7 5 13 13 N 1.46506 * 109.47011 * 294.99862 * 3 2 1 14 14 C 1.34774 * 119.99954 * 85.00540 * 13 3 2 15 15 O 1.21288 * 119.99964 * 355.55715 * 14 13 3 16 16 C 1.50699 * 120.00301 * 175.56575 * 14 13 3 17 17 S 1.81402 * 115.54645 * 288.56536 * 16 14 13 18 18 C 1.81400 * 101.92474 * 294.87937 * 17 16 14 19 19 O 1.42105 * 108.57911 * 49.36886 * 17 16 14 20 20 O 1.42098 * 108.57962 * 180.38858 * 17 16 14 21 21 C 1.52998 * 117.50082 * 142.86067 * 16 14 13 22 22 C 1.52997 * 117.49839 * 74.23452 * 16 14 13 23 23 H 1.08994 * 109.46919 * 299.99990 * 1 2 3 24 24 H 1.08997 * 109.46714 * 60.00134 * 1 2 3 25 25 H 1.08998 * 109.46331 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47149 * 240.00133 * 2 1 3 27 27 H 1.08999 * 109.47557 * 119.99512 * 2 1 3 28 28 H 0.96998 * 119.99526 * 179.97438 * 8 7 5 29 29 H 0.96996 * 120.00402 * 264.99414 * 13 3 2 30 30 H 1.08998 * 109.47099 * 58.88561 * 18 17 16 31 31 H 1.08999 * 109.46946 * 178.88966 * 18 17 16 32 32 H 1.09001 * 109.46443 * 298.88909 * 18 17 16 33 33 H 1.08995 * 117.50095 * 359.97438 * 21 16 14 34 34 H 1.08999 * 117.49536 * 145.02108 * 21 16 14 35 35 H 1.09003 * 117.50007 * 214.97900 * 22 16 14 36 36 H 1.09000 * 117.50127 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1473 1.8890 -0.6524 7 6 4.1433 0.8786 1.2279 8 7 3.4063 0.3368 2.1729 9 14 6.0050 0.8802 1.3811 10 1 6.4428 2.1131 2.0836 11 1 6.4391 -0.3109 2.1545 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3689 2.5628 -0.4647 16 6 0.0729 3.4243 -2.6169 17 16 0.9040 5.0228 -2.8291 18 6 0.2391 5.9785 -1.4380 19 8 2.2984 4.8385 -2.6264 20 8 0.4509 5.6114 -4.0405 21 6 -1.3644 3.3017 -3.1268 22 6 -0.2247 2.6100 -3.8775 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8935 -0.5137 0.8900 28 1 3.8295 -0.0616 2.9495 29 1 2.2719 2.1233 -1.9978 30 1 0.4792 5.4734 -0.5024 31 1 0.6815 6.9746 -1.4371 32 1 -0.8431 6.0616 -1.5387 33 1 -2.0479 2.6711 -2.5584 34 1 -1.8109 4.1817 -3.5898 35 1 0.0785 3.0349 -4.8345 36 1 -0.1581 1.5246 -3.8029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331813841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:40 Heat of formation + Delta-G solvation = -80.499558 kcal Electronic energy + Delta-G solvation = -20493.375461 eV Core-core repulsion = 17299.188732 eV Total energy + Delta-G solvation = -3194.186729 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -39.60143 -37.27310 -36.37853 -36.05677 -34.98190 -32.39318 -30.96406 -29.55106 -27.19961 -24.71976 -22.97476 -22.67787 -20.77208 -19.50742 -18.79869 -17.94055 -16.56851 -16.14902 -15.97938 -15.53517 -15.32606 -14.64468 -14.41881 -13.99869 -13.41179 -13.20581 -13.15074 -12.73218 -12.19027 -12.06364 -12.01326 -11.91262 -11.77308 -11.56980 -11.33107 -11.23967 -11.01249 -10.86121 -10.85209 -10.42422 -10.33752 -10.18552 -9.66393 -9.23020 -9.08700 -8.51554 -7.93869 -6.13654 -4.22336 -0.06121 2.48911 3.00184 3.19578 3.26463 3.32846 3.36188 3.61164 3.76445 4.12566 4.36419 4.44477 4.56397 4.81586 4.99870 5.02683 5.18315 5.33827 5.51330 5.61961 5.71169 5.86365 6.33294 6.40149 6.59408 6.98034 7.11509 7.26225 7.34273 7.57150 7.70579 7.84712 8.13064 8.54712 8.72306 8.97252 9.44592 10.91806 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.021945 B = 0.006422 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.586781 B = 4359.248361 C = 5108.462511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.066 0.934 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.690 5.690 14 C 0.548 3.452 15 O -0.531 6.531 16 C -0.672 4.672 17 S 2.457 3.543 18 C -0.646 4.646 19 O -0.918 6.918 20 O -0.940 6.940 21 C -0.099 4.099 22 C -0.108 4.108 23 H 0.050 0.950 24 H 0.039 0.961 25 H 0.022 0.978 26 H 0.032 0.968 27 H 0.101 0.899 28 H 0.264 0.736 29 H 0.396 0.604 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.791 6.493 -9.785 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.084 0.916 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.337 5.337 14 C 0.329 3.671 15 O -0.409 6.409 16 C -0.763 4.763 17 S 2.636 3.364 18 C -0.796 4.796 19 O -0.915 6.915 20 O -0.937 6.937 21 C -0.137 4.137 22 C -0.147 4.147 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.041 0.959 26 H 0.051 0.949 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.229 0.771 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.702 6.544 -9.558 13.910 hybrid contribution 0.787 -0.265 0.514 0.976 sum -6.915 6.279 -9.044 13.002 Atomic orbital electron populations 1.21878 0.98319 0.98001 1.01317 1.21956 0.92612 0.99661 1.02523 1.18900 0.94602 0.89286 0.80332 0.93197 1.21278 0.90538 1.38868 1.06506 0.91576 1.24878 0.98734 0.94715 0.95330 1.69893 1.35187 1.37746 1.09391 0.86435 0.84732 0.77593 0.78307 1.20508 1.21131 1.19704 1.46540 1.13949 1.54184 1.19013 1.18247 0.83585 0.80385 0.84932 1.90688 1.49391 1.60648 1.40195 1.32080 1.15423 1.23144 1.05607 1.06842 0.76005 0.76523 0.77069 1.30130 1.13709 1.14878 1.20932 1.93647 1.26883 1.84702 1.86288 1.93570 1.83442 1.74626 1.42029 1.22854 0.87297 1.03811 0.99738 1.22923 1.00286 1.00334 0.91115 0.93131 0.94154 0.95911 0.94886 0.88074 0.92570 0.77106 0.84613 0.85236 0.85165 0.86299 0.86520 0.86515 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.47 37.16 0.31 -2.65 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.40 7.65 -51.93 -0.40 1.00 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.07 1.72 7.74 -52.49 -0.41 1.31 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.47 11.29 55.43 0.63 -23.85 16 9 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.69 -14.16 5.02 -54.93 -0.28 -14.43 16 14 C 0.55 10.09 5.72 -10.99 -0.06 10.03 16 15 O -0.53 -11.18 13.66 5.55 0.08 -11.10 16 16 C -0.67 -9.18 2.24 -91.77 -0.21 -9.38 16 17 S 2.46 32.61 5.38 -107.50 -0.58 32.03 16 18 C -0.65 -7.03 10.56 101.05 1.07 -5.96 16 19 O -0.92 -15.71 18.07 -57.83 -1.04 -16.76 16 20 O -0.94 -13.23 17.76 -57.83 -1.03 -14.26 16 21 C -0.10 -1.05 9.70 -26.73 -0.26 -1.31 16 22 C -0.11 -1.18 9.87 -26.73 -0.26 -1.45 16 23 H 0.05 1.15 7.80 -51.93 -0.41 0.75 16 24 H 0.04 0.83 5.54 -51.93 -0.29 0.54 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.40 7.53 8.54 -40.82 -0.35 7.18 16 30 H 0.14 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.13 1.14 8.14 -51.92 -0.42 0.72 16 32 H 0.13 1.10 8.14 -51.92 -0.42 0.68 16 33 H 0.12 1.31 8.10 -51.93 -0.42 0.89 16 34 H 0.12 0.94 8.12 -51.93 -0.42 0.52 16 35 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -32.66 315.05 -7.69 -40.35 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.09 Total: 7.66 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -0.11 Total: -20.16 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.35 Total: -38.28 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -2.00 Total: -42.12 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 32.61 SS G_CDS: -0.58 Total: 32.03 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.66 -7.69 -40.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331813841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.150 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds