Wall clock time and date at job start Mon Mar 30 2020 02:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46898 * 2 1 4 4 H 1.09002 * 109.47671 * 55.00168 * 3 2 1 5 5 C 1.50704 * 109.47147 * 175.00345 * 3 2 1 6 6 H 1.08001 * 120.00526 * 120.00037 * 5 3 2 7 7 C 1.37876 * 119.99639 * 299.99412 * 5 3 2 8 8 N 1.31520 * 120.00219 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00020 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47068 * 90.00457 * 9 7 5 11 11 H 1.48504 * 109.47394 * 210.00347 * 9 7 5 12 12 H 1.48504 * 109.47071 * 330.00523 * 9 7 5 13 13 N 1.46506 * 109.47011 * 294.99862 * 3 2 1 14 14 C 1.34774 * 119.99954 * 85.00540 * 13 3 2 15 15 O 1.21288 * 119.99964 * 355.55715 * 14 13 3 16 16 C 1.50699 * 120.00301 * 175.56575 * 14 13 3 17 17 S 1.81402 * 115.54645 * 288.56536 * 16 14 13 18 18 C 1.81400 * 101.92474 * 294.87937 * 17 16 14 19 19 O 1.42105 * 108.57911 * 49.36886 * 17 16 14 20 20 O 1.42098 * 108.57962 * 180.38858 * 17 16 14 21 21 C 1.52998 * 117.50082 * 142.86067 * 16 14 13 22 22 C 1.52997 * 117.49839 * 74.23452 * 16 14 13 23 23 H 1.08994 * 109.46919 * 299.99990 * 1 2 3 24 24 H 1.08997 * 109.46714 * 60.00134 * 1 2 3 25 25 H 1.08998 * 109.46331 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47149 * 240.00133 * 2 1 3 27 27 H 1.08999 * 109.47557 * 119.99512 * 2 1 3 28 28 H 0.96998 * 119.99526 * 179.97438 * 8 7 5 29 29 H 0.96996 * 120.00402 * 264.99414 * 13 3 2 30 30 H 1.08998 * 109.47099 * 58.88561 * 18 17 16 31 31 H 1.08999 * 109.46946 * 178.88966 * 18 17 16 32 32 H 1.09001 * 109.46443 * 298.88909 * 18 17 16 33 33 H 1.08995 * 117.50095 * 359.97438 * 21 16 14 34 34 H 1.08999 * 117.49536 * 145.02108 * 21 16 14 35 35 H 1.09003 * 117.50007 * 214.97900 * 22 16 14 36 36 H 1.09000 * 117.50127 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1473 1.8890 -0.6524 7 6 4.1433 0.8786 1.2279 8 7 3.4063 0.3368 2.1729 9 14 6.0050 0.8802 1.3811 10 1 6.4428 2.1131 2.0836 11 1 6.4391 -0.3109 2.1545 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3689 2.5628 -0.4647 16 6 0.0729 3.4243 -2.6169 17 16 0.9040 5.0228 -2.8291 18 6 0.2391 5.9785 -1.4380 19 8 2.2984 4.8385 -2.6264 20 8 0.4509 5.6114 -4.0405 21 6 -1.3644 3.3017 -3.1268 22 6 -0.2247 2.6100 -3.8775 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8935 -0.5137 0.8900 28 1 3.8295 -0.0616 2.9495 29 1 2.2719 2.1233 -1.9978 30 1 0.4792 5.4734 -0.5024 31 1 0.6815 6.9746 -1.4371 32 1 -0.8431 6.0616 -1.5387 33 1 -2.0479 2.6711 -2.5584 34 1 -1.8109 4.1817 -3.5898 35 1 0.0785 3.0349 -4.8345 36 1 -0.1581 1.5246 -3.8029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331813841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:37 Heat of formation + Delta-G solvation = -105.505345 kcal Electronic energy + Delta-G solvation = -20494.459793 eV Core-core repulsion = 17299.188732 eV Total energy + Delta-G solvation = -3195.271061 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.05704 -38.39591 -37.63290 -37.20616 -36.65353 -34.29986 -32.77707 -30.44626 -29.09630 -26.12128 -24.72605 -23.56928 -22.25877 -21.26319 -20.11622 -19.21202 -18.13378 -17.38756 -17.23493 -17.06818 -16.72512 -16.18940 -16.03745 -15.28328 -14.83384 -14.61714 -14.10992 -14.03314 -13.74189 -13.53549 -13.28491 -13.21435 -13.16857 -12.95529 -12.94205 -12.70886 -12.58425 -12.32641 -12.17800 -12.08250 -11.85006 -11.58150 -11.39093 -11.07886 -10.76827 -10.53247 -9.69724 -8.18030 -6.34143 -1.08914 1.38942 1.43316 1.44227 1.54791 1.84706 2.04339 2.28776 2.46278 2.68342 3.05580 3.11321 3.43177 3.67270 3.80657 4.01130 4.14037 4.43288 4.49462 4.55815 4.57879 4.74539 4.82138 4.87454 5.04875 5.05620 5.25023 5.42453 5.51770 5.59407 5.77069 5.88570 6.15292 6.72740 6.87316 7.28573 7.43976 8.87050 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.021945 B = 0.006422 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.586781 B = 4359.248361 C = 5108.462511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.066 0.934 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.964 3.036 10 H -0.278 1.278 11 H -0.280 1.280 12 H -0.265 1.265 13 N -0.696 5.696 14 C 0.550 3.450 15 O -0.560 6.560 16 C -0.689 4.689 17 S 2.469 3.531 18 C -0.640 4.640 19 O -0.964 6.964 20 O -0.945 6.945 21 C -0.082 4.082 22 C -0.102 4.102 23 H 0.029 0.971 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.266 0.734 29 H 0.402 0.598 30 H 0.120 0.880 31 H 0.152 0.848 32 H 0.160 0.840 33 H 0.115 0.885 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 7.210 -11.400 15.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.025 0.975 5 C -0.589 4.589 6 H 0.084 0.916 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.789 3.211 10 H -0.204 1.204 11 H -0.206 1.206 12 H -0.189 1.189 13 N -0.344 5.344 14 C 0.334 3.666 15 O -0.440 6.440 16 C -0.779 4.779 17 S 2.650 3.350 18 C -0.793 4.793 19 O -0.961 6.961 20 O -0.942 6.942 21 C -0.120 4.120 22 C -0.140 4.140 23 H 0.048 0.952 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.237 0.763 30 H 0.138 0.862 31 H 0.171 0.829 32 H 0.178 0.822 33 H 0.134 0.866 34 H 0.167 0.833 35 H 0.158 0.842 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.354 7.259 -11.222 15.761 hybrid contribution 0.900 -0.446 1.024 1.434 sum -7.454 6.813 -10.198 14.352 Atomic orbital electron populations 1.21719 0.96543 0.99168 1.00697 1.21802 0.94126 0.98838 1.01387 1.18476 0.93629 0.89513 0.80909 0.97472 1.21586 0.91665 1.38900 1.06729 0.91607 1.25677 1.03039 0.94324 0.95001 1.70023 1.36885 1.38287 1.09811 0.85461 0.79538 0.77583 0.78493 1.20357 1.20563 1.18926 1.46352 1.15234 1.54942 1.17875 1.18787 0.82212 0.79506 0.86119 1.90670 1.49963 1.61524 1.41821 1.31878 1.18346 1.23264 1.04409 1.06346 0.74962 0.76212 0.77452 1.30091 1.15814 1.15192 1.18211 1.93593 1.30076 1.85371 1.87107 1.93557 1.83291 1.74396 1.42921 1.23135 0.85761 1.04773 0.98340 1.23204 0.99611 1.00438 0.90700 0.95189 0.93237 0.93749 0.94215 0.90815 0.92497 0.76318 0.86159 0.82935 0.82171 0.86642 0.83250 0.84181 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.47 71.98 0.61 -4.74 16 2 C -0.12 -5.94 5.45 30.60 0.17 -5.77 16 3 C 0.28 14.14 2.24 44.24 0.10 14.23 16 4 H 0.01 0.44 7.65 -2.39 -0.02 0.42 16 5 C -0.55 -29.77 8.73 25.60 0.22 -29.55 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 1.08 5.29 84.65 0.45 1.53 16 8 N -0.91 -51.72 11.29 21.45 0.24 -51.48 16 9 Si 0.96 42.88 29.54 68.60 2.03 44.91 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 13 N -0.70 -28.99 5.02 -446.07 -2.24 -31.23 16 14 C 0.55 20.18 5.72 87.66 0.50 20.68 16 15 O -0.56 -23.74 13.66 -3.06 -0.04 -23.79 16 16 C -0.69 -17.64 2.24 -11.54 -0.03 -17.67 16 17 S 2.47 61.63 5.38 -56.49 -0.30 61.32 16 18 C -0.64 -12.58 10.56 113.37 1.20 -11.39 16 19 O -0.96 -32.84 18.07 -127.37 -2.30 -35.14 16 20 O -0.94 -24.11 17.76 -127.37 -2.26 -26.37 16 21 C -0.08 -1.49 9.70 30.60 0.30 -1.19 16 22 C -0.10 -1.94 9.87 30.59 0.30 -1.64 16 23 H 0.03 1.38 7.80 -2.39 -0.02 1.36 16 24 H 0.05 2.01 5.54 -2.39 -0.01 2.00 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 4.00 5.95 -2.39 -0.01 3.99 16 28 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.40 15.50 8.54 -92.71 -0.79 14.71 16 30 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.15 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.16 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.12 2.24 8.10 -2.39 -0.02 2.22 16 34 H 0.15 1.74 8.12 -2.39 -0.02 1.72 16 35 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -71.79 315.05 -0.76 -72.55 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.30 Total: 24.72 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 3.82 Total: -35.50 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -2.00 Total: -82.71 kcal Atomic # 8 Polarization: -80.69 SS G_CDS: -4.61 Total: -85.30 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 61.63 SS G_CDS: -0.30 Total: 61.32 kcal Total: -71.79 -0.76 -72.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331813841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.954 kcal (2) G-P(sol) polarization free energy of solvation -71.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds