Wall clock time and date at job start Mon Mar 30 2020 01:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00085 * 2 1 4 4 H 1.48497 * 109.46790 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47007 * 300.00488 * 3 2 1 6 6 H 1.48502 * 109.46966 * 60.00364 * 3 2 1 7 7 C 1.37876 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47307 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47310 * 180.02562 * 10 9 7 12 12 O 1.42097 * 110.54492 * 68.37549 * 11 10 9 13 13 O 1.42101 * 110.54091 * 291.62188 * 11 10 9 14 14 N 1.65601 * 104.45056 * 180.02562 * 11 10 9 15 15 C 1.46499 * 120.00172 * 64.99627 * 14 11 10 16 16 C 1.50704 * 109.47090 * 164.99884 * 15 14 11 17 17 C 1.29982 * 118.56290 * 95.00117 * 16 15 14 18 18 C 1.50389 * 122.51161 * 180.43182 * 17 16 15 19 19 C 1.53125 * 109.59556 * 343.37807 * 18 17 16 20 20 O 1.43308 * 108.41399 * 47.82310 * 19 18 17 21 21 C 1.42898 * 113.02169 * 291.85667 * 20 19 18 22 22 H 0.97008 * 119.99854 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46941 * 60.00348 * 9 7 2 24 24 H 1.09004 * 109.46801 * 300.00081 * 9 7 2 25 25 H 1.09003 * 109.46969 * 59.99716 * 10 9 7 26 26 H 1.08998 * 109.47468 * 300.00129 * 10 9 7 27 27 H 0.97005 * 119.99634 * 244.99964 * 14 11 10 28 28 H 1.09002 * 109.46955 * 45.00348 * 15 14 11 29 29 H 1.08998 * 109.47428 * 285.00245 * 15 14 11 30 30 H 1.08004 * 118.74794 * 0.45617 * 17 16 15 31 31 H 1.08997 * 109.45433 * 223.33711 * 18 17 16 32 32 H 1.09003 * 109.42661 * 103.40157 * 18 17 16 33 33 H 1.09002 * 109.68336 * 167.56430 * 19 18 17 34 34 H 1.08999 * 109.68109 * 288.08078 * 19 18 17 35 35 H 1.09004 * 109.32593 * 289.92600 * 21 20 19 36 36 H 1.08996 * 109.25753 * 170.27764 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 16 1.3382 -5.2330 -0.0013 12 8 0.6646 -5.4193 -1.2385 13 8 0.6639 -5.4200 1.2355 14 7 2.5204 -6.3927 -0.0005 15 6 3.4180 -6.5229 1.1499 16 6 4.1380 -7.8449 1.0781 17 6 5.3189 -7.8807 0.5360 18 6 6.1119 -9.1523 0.4095 19 6 5.5296 -10.2159 1.3446 20 8 4.1081 -10.2470 1.1653 21 6 3.4595 -9.0637 1.6357 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5570 0.8897 25 1 2.8719 -3.6043 0.8895 26 1 2.8719 -3.6044 -0.8905 27 1 2.6185 -6.9857 -0.7619 28 1 2.8372 -6.4751 2.0711 29 1 4.1457 -5.7116 1.1367 30 1 5.7471 -6.9623 0.1625 31 1 7.1504 -8.9608 0.6796 32 1 6.0643 -9.5084 -0.6196 33 1 5.9519 -11.1906 1.1001 34 1 5.7638 -9.9634 2.3788 35 1 3.5047 -9.0361 2.7244 36 1 2.4171 -9.0744 1.3174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344982062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:32 Heat of formation + Delta-G solvation = -144.057294 kcal Electronic energy + Delta-G solvation = -19173.711546 eV Core-core repulsion = 15976.768746 eV Total energy + Delta-G solvation = -3196.942799 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45233 -38.17100 -37.09317 -36.89746 -35.88762 -34.16679 -33.11861 -31.98893 -27.58702 -26.96994 -26.30847 -23.66256 -23.58070 -20.35434 -19.32151 -18.98810 -18.33900 -17.68959 -17.22482 -17.00214 -16.89396 -16.51024 -16.14554 -15.43911 -15.10038 -14.99213 -14.48536 -14.27257 -14.05432 -13.72237 -13.60428 -13.44513 -13.19494 -13.11071 -12.94781 -12.86381 -12.76808 -12.26624 -12.21796 -12.09133 -11.73174 -11.49008 -11.17790 -10.65252 -10.61233 -10.34595 -9.94202 -8.25731 -6.39662 -0.68748 1.00531 1.41564 1.42086 1.55331 1.98506 2.38388 2.81940 2.95103 3.07989 3.27907 3.62925 3.74843 3.99981 4.06130 4.14786 4.21810 4.37029 4.43854 4.49725 4.60260 4.65332 4.76851 4.80500 4.90027 5.01591 5.07281 5.28474 5.29545 5.49553 5.69146 5.79427 6.06347 6.10027 6.17449 6.74589 7.30670 8.86747 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.030947 B = 0.003779 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.553979 B = 7407.926209 C = 7983.200723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.975 3.025 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.018 3.982 10 C -0.586 4.586 11 S 2.621 3.379 12 O -1.001 7.001 13 O -0.997 6.997 14 N -1.106 6.106 15 C 0.144 3.856 16 C -0.185 4.185 17 C -0.117 4.117 18 C -0.128 4.128 19 C 0.047 3.953 20 O -0.399 6.399 21 C 0.091 3.909 22 H 0.267 0.733 23 H 0.006 0.994 24 H 0.008 0.992 25 H 0.145 0.855 26 H 0.143 0.857 27 H 0.423 0.577 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.753 -17.885 2.781 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.178 1.178 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.021 4.021 10 C -0.718 4.718 11 S 2.718 3.282 12 O -0.991 6.991 13 O -0.987 6.987 14 N -0.867 5.867 15 C 0.019 3.981 16 C -0.187 4.187 17 C -0.137 4.137 18 C -0.165 4.165 19 C -0.029 4.029 20 O -0.319 6.319 21 C 0.015 3.985 22 H 0.076 0.924 23 H 0.024 0.976 24 H 0.026 0.974 25 H 0.163 0.837 26 H 0.161 0.839 27 H 0.259 0.741 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.147 0.853 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.532 -18.018 2.874 23.326 hybrid contribution 0.444 1.324 -0.284 1.425 sum 14.976 -16.694 2.590 22.576 Atomic orbital electron populations 1.70112 1.08101 1.28237 1.51003 1.26130 0.95854 1.03932 0.94444 0.85254 0.79202 0.77992 0.77724 1.17811 1.20521 1.20406 1.21559 0.94033 0.90750 1.51300 0.90479 1.18844 0.93697 0.93161 0.96415 1.30321 1.12757 1.16264 1.12502 1.04433 0.74649 0.76497 0.72638 1.93503 1.73150 1.85849 1.46621 1.93497 1.72730 1.85449 1.46995 1.55399 1.52312 1.50710 1.28301 1.20488 0.92971 0.96305 0.88353 1.21510 0.97032 0.95838 1.04279 1.22558 0.94701 1.00196 0.96249 1.21227 1.00564 0.93014 1.01665 1.22910 0.80162 1.00754 0.99100 1.88121 1.21073 1.38461 1.84203 1.21405 0.96573 0.82052 0.98461 0.92428 0.97613 0.97387 0.83698 0.83858 0.74116 0.89960 0.88704 0.85305 0.87472 0.89417 0.86994 0.91905 0.90713 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 2 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 3 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 4 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.54 -29.42 9.11 25.60 0.23 -29.19 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 0.92 4.98 29.85 0.15 1.06 16 10 C -0.59 -21.28 6.01 71.98 0.43 -20.85 16 11 S 2.62 91.17 5.46 -56.49 -0.31 90.86 16 12 O -1.00 -41.82 18.08 -127.65 -2.31 -44.13 16 13 O -1.00 -40.90 17.49 -127.65 -2.23 -43.13 16 14 N -1.11 -26.48 5.88 -190.78 -1.12 -27.60 16 15 C 0.14 2.83 6.18 85.63 0.53 3.36 16 16 C -0.18 -3.22 5.32 -15.58 -0.08 -3.30 16 17 C -0.12 -1.67 9.53 26.60 0.25 -1.42 16 18 C -0.13 -1.40 6.36 29.79 0.19 -1.21 16 19 C 0.05 0.59 6.89 72.02 0.50 1.09 16 20 O -0.40 -7.91 10.85 -148.98 -1.62 -9.53 16 21 C 0.09 1.72 6.76 71.09 0.48 2.20 16 22 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 23 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 24 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 25 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 26 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 27 H 0.42 8.91 8.61 -96.74 -0.83 8.07 16 28 H 0.08 1.72 7.68 -2.39 -0.02 1.70 16 29 H 0.09 1.46 7.86 -2.39 -0.02 1.44 16 30 H 0.13 1.52 7.83 -2.91 -0.02 1.50 16 31 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 0.69 8.10 -2.39 -0.02 0.67 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -76.65 317.92 -1.89 -78.54 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.24 Total: 14.62 kcal Atomic # 6 Polarization: -51.24 SS G_CDS: 3.14 Total: -48.10 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -0.84 Total: -84.07 kcal Atomic # 8 Polarization: -90.63 SS G_CDS: -6.16 Total: -96.79 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 91.17 SS G_CDS: -0.31 Total: 90.86 kcal Total: -76.65 -1.89 -78.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344982062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.514 kcal (2) G-P(sol) polarization free energy of solvation -76.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds