Wall clock time and date at job start Mon Mar 30 2020 02:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47448 * 2 1 4 4 H 1.09004 * 109.64162 * 54.73005 * 3 2 1 5 5 C 1.53179 * 109.55956 * 174.99664 * 3 2 1 6 6 N 1.46393 * 109.51080 * 178.09874 * 5 3 2 7 7 C 1.34776 * 119.69833 * 115.68060 * 6 5 3 8 8 O 1.21694 * 119.99716 * 174.71370 * 7 6 5 9 9 C 1.46370 * 120.00086 * 354.71822 * 7 6 5 10 10 H 1.07999 * 120.00130 * 5.00431 * 9 7 6 11 11 C 1.40048 * 119.99687 * 185.00990 * 9 7 6 12 12 N 1.30671 * 120.00516 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99652 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47239 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47133 * 120.00108 * 13 11 9 16 16 H 1.48507 * 109.46767 * 239.99356 * 13 11 9 17 17 C 1.46388 * 120.59949 * 295.70842 * 6 5 3 18 18 C 1.53185 * 109.51364 * 64.29287 * 17 6 5 19 19 H 1.08996 * 109.55689 * 181.90193 * 18 17 6 20 20 C 1.53001 * 109.55505 * 61.58296 * 18 17 6 21 21 S 1.81663 * 109.55836 * 294.46999 * 3 2 1 22 22 O 1.42091 * 108.65676 * 70.24213 * 21 3 2 23 23 O 1.42112 * 108.72210 * 298.96880 * 21 3 2 24 24 H 1.08997 * 109.47031 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47408 * 299.99943 * 1 2 3 26 26 H 1.09003 * 109.46740 * 59.99977 * 1 2 3 27 27 H 1.09000 * 109.47290 * 240.00307 * 2 1 3 28 28 H 1.09000 * 109.47342 * 120.00470 * 2 1 3 29 29 H 1.08995 * 109.46424 * 58.09265 * 5 3 2 30 30 H 1.08995 * 109.46965 * 298.11170 * 5 3 2 31 31 H 0.96998 * 120.00423 * 180.02562 * 12 11 9 32 32 H 1.08995 * 109.46481 * 184.30805 * 17 6 5 33 33 H 1.09001 * 109.46416 * 304.28344 * 17 6 5 34 34 H 1.08994 * 109.47363 * 59.99873 * 20 18 17 35 35 H 1.09006 * 109.47033 * 180.02562 * 20 18 17 36 36 H 1.08999 * 109.47282 * 299.99938 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9855 0.8382 5 6 3.5666 1.4466 0.1259 6 7 4.0573 2.8251 0.0802 7 6 4.6705 3.3516 1.1587 8 8 5.1655 4.4616 1.0956 9 6 4.7412 2.5885 2.4057 10 1 4.3744 1.5733 2.4390 11 6 5.2845 3.1750 3.5556 12 7 5.7286 4.4032 3.5152 13 14 5.3740 2.2013 5.1473 14 1 4.8089 0.8452 4.9305 15 1 6.7906 2.0848 5.5773 16 1 4.5933 2.9001 6.1996 17 6 3.8873 3.6369 -1.1260 18 6 2.3945 3.8638 -1.3840 19 1 2.2660 4.4396 -2.3004 20 6 1.7815 4.6260 -0.2074 21 16 1.5743 2.2522 -1.5581 22 8 0.1681 2.4560 -1.5618 23 8 2.1778 1.5492 -2.6357 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 4.0005 0.8792 -0.6975 30 1 3.8543 0.9899 1.0728 31 1 6.1052 4.8093 4.3116 32 1 4.3826 4.5982 -0.9896 33 1 4.3284 3.1189 -1.9776 34 1 2.2810 5.5886 -0.0982 35 1 0.7193 4.7863 -0.3921 36 1 1.9074 4.0456 0.7067 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346341804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:32 Heat of formation + Delta-G solvation = -131.752367 kcal Electronic energy + Delta-G solvation = -21016.572383 eV Core-core repulsion = 17820.163165 eV Total energy + Delta-G solvation = -3196.409218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -40.35924 -38.14928 -37.42097 -37.16843 -36.02605 -34.60186 -33.61002 -30.08731 -29.05097 -27.03212 -24.82796 -23.44905 -22.92869 -21.23736 -19.58416 -18.69604 -18.10406 -17.84241 -17.12831 -16.79261 -16.43410 -16.16407 -15.92400 -15.04531 -14.83395 -14.51568 -14.25081 -14.06017 -13.83824 -13.68333 -13.35696 -13.29617 -13.14505 -13.03209 -12.84133 -12.69073 -12.56785 -12.43583 -12.30776 -12.13208 -11.96745 -11.87380 -11.51136 -10.94814 -10.81781 -9.79437 -9.37273 -8.30151 -6.84749 -0.98662 1.40668 1.43209 1.58878 1.63823 2.20684 2.42633 2.50616 2.63469 2.94432 3.34548 3.53616 3.61475 3.67123 3.91208 4.04769 4.11213 4.33702 4.42104 4.48546 4.63698 4.71866 4.74218 4.79495 4.81987 4.89009 5.08424 5.12319 5.18964 5.39012 5.41348 5.64230 6.08605 6.22192 6.88753 7.28734 8.43000 8.65197 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.023281 B = 0.007186 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.394929 B = 3895.330034 C = 4564.009138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.106 4.106 3 C -0.566 4.566 4 H 0.146 0.854 5 C 0.128 3.872 6 N -0.649 5.649 7 C 0.548 3.452 8 O -0.620 6.620 9 C -0.564 4.564 10 H 0.103 0.897 11 C 0.033 3.967 12 N -0.819 5.819 13 Si 0.988 3.012 14 H -0.241 1.241 15 H -0.274 1.274 16 H -0.273 1.273 17 C 0.125 3.875 18 C -0.575 4.575 19 H 0.163 0.837 20 C -0.132 4.132 21 S 2.424 3.576 22 O -0.959 6.959 23 O -0.963 6.963 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.273 0.727 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.615 -8.271 -4.568 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.145 4.145 3 C -0.679 4.679 4 H 0.163 0.837 5 C 0.004 3.996 6 N -0.385 5.385 7 C 0.355 3.645 8 O -0.506 6.506 9 C -0.600 4.600 10 H 0.120 0.880 11 C -0.183 4.183 12 N -0.448 5.448 13 Si 0.808 3.192 14 H -0.163 1.163 15 H -0.200 1.200 16 H -0.198 1.198 17 C 0.000 4.000 18 C -0.686 4.686 19 H 0.181 0.819 20 C -0.191 4.191 21 S 2.610 3.390 22 O -0.956 6.956 23 O -0.960 6.960 24 H 0.107 0.893 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.128 0.872 29 H 0.106 0.894 30 H 0.137 0.863 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.790 -7.829 -5.273 12.897 hybrid contribution 0.715 0.641 1.184 1.524 sum -8.074 -7.187 -4.089 11.557 Atomic orbital electron populations 1.22219 0.94541 1.04228 1.03199 1.21410 0.96609 0.90417 1.06096 1.30382 1.06481 1.10306 1.20755 0.83653 1.21444 0.87945 0.83680 1.06575 1.48050 1.62933 1.13501 1.13972 1.18603 0.76980 0.85584 0.83345 1.90572 1.52058 1.23818 1.84151 1.21567 1.43265 1.01726 0.93474 0.87970 1.26897 0.91883 0.95405 1.04134 1.70170 1.29748 1.14569 1.30344 0.85102 0.78513 0.79547 0.76058 1.16310 1.19959 1.19827 1.20990 0.91223 0.99093 0.88721 1.30349 1.08085 1.21267 1.08917 0.81916 1.21536 1.01265 1.01180 0.95075 1.08004 0.75174 0.77903 0.77964 1.93502 1.29040 1.85649 1.87432 1.93507 1.79095 1.71630 1.51790 0.89318 0.91298 0.92822 0.89608 0.87160 0.89357 0.86287 0.91670 0.89710 0.89369 0.91568 0.89241 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.87 9.58 71.98 0.69 -3.18 16 2 C -0.11 -2.28 5.40 30.59 0.17 -2.12 16 3 C -0.57 -15.32 2.22 30.65 0.07 -15.25 16 4 H 0.15 3.92 7.16 -2.39 -0.02 3.90 16 5 C 0.13 4.04 5.37 86.46 0.46 4.50 16 6 N -0.65 -26.11 2.12 -826.77 -1.75 -27.87 16 7 C 0.55 28.63 7.53 86.36 0.65 29.28 16 8 O -0.62 -38.26 14.35 -4.33 -0.06 -38.32 16 9 C -0.56 -28.59 8.83 24.83 0.22 -28.37 16 10 H 0.10 4.47 5.59 -2.91 -0.02 4.45 16 11 C 0.03 1.68 5.50 85.30 0.47 2.15 16 12 N -0.82 -47.17 11.84 21.84 0.26 -46.91 16 13 Si 0.99 37.88 29.56 68.60 2.03 39.91 16 14 H -0.24 -8.27 7.11 99.48 0.71 -7.57 16 15 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 16 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 17 C 0.12 4.47 5.63 86.46 0.49 4.96 16 18 C -0.57 -17.09 3.39 30.66 0.10 -16.99 16 19 H 0.16 3.85 8.14 -2.39 -0.02 3.83 16 20 C -0.13 -4.18 8.84 71.98 0.64 -3.54 16 21 S 2.42 70.94 3.86 -56.49 -0.22 70.72 16 22 O -0.96 -30.68 15.53 -127.38 -1.98 -32.65 16 23 O -0.96 -31.72 18.01 -127.38 -2.29 -34.02 16 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.31 5.67 -2.39 -0.01 1.30 16 27 H 0.09 1.71 8.13 -2.39 -0.02 1.69 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.12 3.78 5.19 -2.39 -0.01 3.77 16 31 H 0.27 14.37 8.29 -92.71 -0.77 13.60 16 32 H 0.08 3.49 6.88 -2.39 -0.02 3.48 16 33 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.09 2.35 8.00 -2.38 -0.02 2.33 16 36 H 0.06 2.03 6.27 -2.39 -0.01 2.02 16 Total: -1.00 -73.07 297.05 1.02 -72.05 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 1.09 Total: 25.65 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 3.95 Total: -28.57 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -1.50 Total: -74.78 kcal Atomic # 8 Polarization: -100.66 SS G_CDS: -4.33 Total: -104.99 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Atomic # 16 Polarization: 70.94 SS G_CDS: -0.22 Total: 70.72 kcal Total: -73.07 1.02 -72.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346341804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.701 kcal (2) G-P(sol) polarization free energy of solvation -73.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds