Wall clock time and date at job start Mon Mar 30 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35713 * 120.36933 * 2 1 4 4 C 1.40067 * 119.52512 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.87612 * 179.97438 * 4 3 2 6 6 F 1.39909 * 109.47243 * 185.02622 * 5 4 3 7 7 F 1.39899 * 109.47275 * 305.02727 * 5 4 3 8 8 F 1.39894 * 109.47217 * 65.02972 * 5 4 3 9 9 N 1.31388 * 120.24607 * 0.02562 * 4 3 2 10 10 C 1.34333 * 120.77728 * 359.97438 * 9 4 3 11 11 N 1.31441 * 119.76990 * 180.02562 * 10 9 4 12 12 C 1.46499 * 119.99795 * 359.97438 * 11 10 9 13 13 C 1.53000 * 109.46840 * 120.00343 * 12 11 10 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46999 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46979 * 120.00025 * 18 16 14 21 21 H 1.48498 * 109.46942 * 239.99938 * 18 16 14 22 22 N 1.36219 * 120.37562 * 180.25570 * 2 1 3 23 23 H 0.97001 * 120.13331 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.47297 * 89.99879 * 1 2 3 25 25 H 1.09000 * 109.47159 * 209.99833 * 1 2 3 26 26 H 1.09000 * 109.47543 * 329.99880 * 1 2 3 27 27 H 1.08003 * 120.23935 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.47391 * 0.02562 * 12 11 10 29 29 H 1.09001 * 109.46813 * 240.00069 * 12 11 10 30 30 H 1.09001 * 109.47194 * 299.99493 * 13 12 11 31 31 H 1.08992 * 109.47399 * 59.99666 * 13 12 11 32 32 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1931 1.1709 0.0000 4 6 3.5937 1.1503 0.0005 5 6 4.3635 2.4458 0.0000 6 9 5.7314 2.1754 -0.1149 7 9 3.9513 3.2327 -1.0808 8 9 4.1226 3.1319 1.1950 9 7 4.2387 0.0056 0.0005 10 6 3.5707 -1.1598 0.0005 11 7 4.2360 -2.2934 0.0011 12 6 5.7009 -2.2829 0.0011 13 6 6.2160 -3.0000 1.2506 14 6 7.7230 -2.9886 1.2509 15 1 8.2596 -2.5175 0.4407 16 6 8.4166 -3.5797 2.2856 17 7 7.7632 -4.1530 3.2724 18 14 10.2846 -3.5663 2.2856 19 1 10.7746 -2.8633 1.0728 20 1 10.7745 -2.8616 3.4975 21 1 10.7896 -4.9627 2.2869 22 7 2.1958 -1.1752 -0.0052 23 1 1.7183 -2.0195 -0.0094 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6631 2.1119 0.0004 28 1 6.0569 -1.2527 0.0011 29 1 6.0679 -2.7945 -0.8887 30 1 5.8491 -2.4884 2.1404 31 1 5.8601 -4.0301 1.2511 32 1 8.2511 -4.5686 4.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347868496.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:13 Heat of formation + Delta-G solvation = -85.855385 kcal Electronic energy + Delta-G solvation = -20924.282135 eV Core-core repulsion = 17084.855220 eV Total energy + Delta-G solvation = -3839.426916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.17161 -47.73437 -47.57522 -41.07882 -35.88351 -35.18643 -33.29436 -31.74609 -29.35009 -28.52741 -27.23875 -24.81554 -22.70006 -22.14240 -20.10023 -18.82528 -18.58032 -18.54179 -18.10621 -17.23969 -16.34988 -15.46663 -14.93426 -14.56149 -14.45181 -14.39236 -14.08288 -13.90449 -13.84216 -13.73408 -13.73025 -13.67505 -13.15985 -12.90163 -12.25648 -12.18480 -11.50076 -11.43853 -10.98954 -10.73208 -10.39874 -10.30511 -10.03726 -9.49688 -9.16675 -8.73677 -8.26559 -7.36215 -5.93175 -3.95426 0.36616 1.53059 2.31838 2.57692 3.36819 3.43341 3.45269 3.48098 3.51129 3.72357 4.18455 4.32825 4.52050 4.61779 4.75087 4.89711 4.92718 5.18110 5.34019 5.42708 5.48712 5.71022 6.24933 6.57524 6.76429 6.89277 7.09571 7.71833 7.76037 7.90886 8.05721 8.36036 8.52373 9.11516 9.67777 11.18457 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.004863 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.632986 B = 5756.922636 C = 6816.976646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.240 3.760 3 C -0.303 4.303 4 C 0.177 3.823 5 C 0.519 3.481 6 F -0.156 7.156 7 F -0.170 7.170 8 F -0.168 7.168 9 N -0.470 5.470 10 C 0.475 3.525 11 N -0.542 5.542 12 C 0.066 3.934 13 C 0.036 3.964 14 C -0.516 4.516 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.611 5.611 23 H 0.425 0.575 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.155 0.845 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.012 0.988 31 H 0.021 0.979 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.130 13.836 -7.624 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.119 3.881 3 C -0.334 4.334 4 C -0.002 4.002 5 C 0.463 3.537 6 F -0.137 7.137 7 F -0.152 7.152 8 F -0.149 7.149 9 N -0.188 5.188 10 C 0.109 3.891 11 N -0.268 5.268 12 C -0.063 4.063 13 C -0.002 4.002 14 C -0.555 4.555 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.232 5.232 23 H 0.264 0.736 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.173 0.827 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.030 0.970 31 H 0.039 0.961 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.043 12.360 -7.471 22.339 hybrid contribution 0.565 0.563 0.181 0.817 sum -16.479 12.923 -7.290 22.174 Atomic orbital electron populations 1.21117 0.86791 1.05482 1.04815 1.20750 0.95020 0.85131 0.87169 1.20427 0.92503 0.98805 1.21710 1.21578 0.92094 0.92574 0.93944 1.17942 0.78209 0.83433 0.74103 1.93298 1.31284 1.93641 1.95493 1.93219 1.90289 1.76063 1.55593 1.93236 1.94249 1.80997 1.46438 1.69229 1.37357 0.97091 1.15082 1.19907 0.81660 0.88679 0.98884 1.72726 1.13741 1.19793 1.20507 1.22236 0.81500 1.01381 1.01192 1.19038 0.95077 0.95555 0.90498 1.21224 0.91395 1.35896 1.07009 0.92450 1.25007 0.98541 0.95369 0.95493 1.69995 1.35298 1.37636 1.10612 0.86501 0.85669 0.77634 0.78014 1.19618 1.21010 1.21012 1.42219 1.05994 1.08802 1.66182 0.73642 0.88475 0.89697 0.88221 0.82746 0.92454 0.91436 0.96997 0.96109 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 10.15 36.01 0.37 -0.08 16 2 C 0.24 2.13 6.85 -81.55 -0.56 1.57 16 3 C -0.30 -3.08 9.25 -39.80 -0.37 -3.45 16 4 C 0.18 2.53 6.30 -82.10 -0.52 2.02 16 5 C 0.52 7.01 3.33 36.00 0.12 7.13 16 6 F -0.16 -2.53 16.87 2.25 0.04 -2.50 16 7 F -0.17 -2.00 17.17 2.25 0.04 -1.96 16 8 F -0.17 -2.16 17.29 2.25 0.04 -2.12 16 9 N -0.47 -8.64 8.14 -10.02 -0.08 -8.72 16 10 C 0.48 8.60 8.42 -323.05 -2.72 5.88 16 11 N -0.54 -11.72 10.67 -62.36 -0.67 -12.38 16 12 C 0.07 1.62 6.27 -4.04 -0.03 1.59 16 13 C 0.04 1.04 5.30 -27.88 -0.15 0.89 16 14 C -0.52 -15.66 9.11 -34.44 -0.31 -15.98 16 15 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -28.31 13.29 55.43 0.74 -27.57 16 18 Si 0.89 22.67 29.54 -169.99 -5.02 17.65 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 22 N -0.61 -7.48 5.41 -10.05 -0.05 -7.53 16 23 H 0.42 4.20 8.85 -40.82 -0.36 3.83 16 24 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.10 0.21 8.09 -51.93 -0.42 -0.21 16 27 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 28 H 0.06 1.43 6.65 -51.93 -0.35 1.08 16 29 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 298.53 15.07 4.50 4.50 Total: -1.00 -36.30 298.53 -7.94 -44.24 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -3.20 Total: -4.79 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -4.26 Total: 1.19 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.06 Total: -56.21 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.12 Total: -6.57 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -36.30 -7.94 -44.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347868496.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.618 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds