Wall clock time and date at job start Mon Mar 30 2020 02:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35713 * 120.36933 * 2 1 4 4 C 1.40067 * 119.52512 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.87612 * 179.97438 * 4 3 2 6 6 F 1.39909 * 109.47243 * 185.02622 * 5 4 3 7 7 F 1.39899 * 109.47275 * 305.02727 * 5 4 3 8 8 F 1.39894 * 109.47217 * 65.02972 * 5 4 3 9 9 N 1.31388 * 120.24607 * 0.02562 * 4 3 2 10 10 C 1.34333 * 120.77728 * 359.97438 * 9 4 3 11 11 N 1.31441 * 119.76990 * 180.02562 * 10 9 4 12 12 C 1.46499 * 119.99795 * 359.97438 * 11 10 9 13 13 C 1.53000 * 109.46840 * 120.00343 * 12 11 10 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46999 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46979 * 120.00025 * 18 16 14 21 21 H 1.48498 * 109.46942 * 239.99938 * 18 16 14 22 22 N 1.36219 * 120.37562 * 180.25570 * 2 1 3 23 23 H 0.97001 * 120.13331 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.47297 * 89.99879 * 1 2 3 25 25 H 1.09000 * 109.47159 * 209.99833 * 1 2 3 26 26 H 1.09000 * 109.47543 * 329.99880 * 1 2 3 27 27 H 1.08003 * 120.23935 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.47391 * 0.02562 * 12 11 10 29 29 H 1.09001 * 109.46813 * 240.00069 * 12 11 10 30 30 H 1.09001 * 109.47194 * 299.99493 * 13 12 11 31 31 H 1.08992 * 109.47399 * 59.99666 * 13 12 11 32 32 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1931 1.1709 0.0000 4 6 3.5937 1.1503 0.0005 5 6 4.3635 2.4458 0.0000 6 9 5.7314 2.1754 -0.1149 7 9 3.9513 3.2327 -1.0808 8 9 4.1226 3.1319 1.1950 9 7 4.2387 0.0056 0.0005 10 6 3.5707 -1.1598 0.0005 11 7 4.2360 -2.2934 0.0011 12 6 5.7009 -2.2829 0.0011 13 6 6.2160 -3.0000 1.2506 14 6 7.7230 -2.9886 1.2509 15 1 8.2596 -2.5175 0.4407 16 6 8.4166 -3.5797 2.2856 17 7 7.7632 -4.1530 3.2724 18 14 10.2846 -3.5663 2.2856 19 1 10.7746 -2.8633 1.0728 20 1 10.7745 -2.8616 3.4975 21 1 10.7896 -4.9627 2.2869 22 7 2.1958 -1.1752 -0.0052 23 1 1.7183 -2.0195 -0.0094 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6631 2.1119 0.0004 28 1 6.0569 -1.2527 0.0011 29 1 6.0679 -2.7945 -0.8887 30 1 5.8491 -2.4884 2.1404 31 1 5.8601 -4.0301 1.2511 32 1 8.2511 -4.5686 4.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347868496.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:12 Heat of formation + Delta-G solvation = -110.774898 kcal Electronic energy + Delta-G solvation = -20925.362727 eV Core-core repulsion = 17084.855220 eV Total energy + Delta-G solvation = -3840.507507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.27702 -48.78663 -48.74895 -42.21001 -37.24642 -36.39529 -35.27857 -33.29312 -30.82447 -29.79726 -28.11406 -26.79851 -23.89095 -23.68155 -21.77647 -19.98742 -19.66838 -19.62391 -19.23830 -18.61797 -18.26998 -16.67012 -16.44827 -16.42403 -15.63051 -15.55854 -15.22395 -15.17071 -14.92073 -14.87962 -14.79601 -14.58943 -14.26138 -14.13723 -13.73383 -13.47070 -13.05985 -12.94535 -12.65805 -12.51547 -12.25842 -11.91141 -11.42597 -11.41171 -11.19887 -10.65783 -10.32393 -8.70856 -8.24247 -6.38128 -0.70281 0.50287 1.19972 1.36243 1.38712 1.47645 1.53239 2.26905 2.33714 2.39090 2.73362 3.07246 3.23730 3.38132 3.56472 3.90733 4.00309 4.30717 4.41306 4.61327 4.73453 4.78160 4.91310 5.02809 5.15713 5.31329 5.39243 5.57923 5.71460 5.88587 6.16896 6.57540 6.75753 6.96361 7.31317 8.88147 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.004863 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.632986 B = 5756.922636 C = 6816.976646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.264 3.736 3 C -0.304 4.304 4 C 0.180 3.820 5 C 0.521 3.479 6 F -0.177 7.177 7 F -0.156 7.156 8 F -0.162 7.162 9 N -0.549 5.549 10 C 0.498 3.502 11 N -0.608 5.608 12 C 0.093 3.907 13 C 0.049 3.951 14 C -0.545 4.545 15 H 0.060 0.940 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.271 1.271 22 N -0.595 5.595 23 H 0.438 0.562 24 H 0.125 0.875 25 H 0.100 0.900 26 H 0.128 0.872 27 H 0.199 0.801 28 H 0.044 0.956 29 H 0.057 0.943 30 H -0.026 1.026 31 H -0.010 1.010 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.381 15.670 -8.170 26.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.142 3.858 3 C -0.335 4.335 4 C 0.008 3.992 5 C 0.465 3.535 6 F -0.158 7.158 7 F -0.137 7.137 8 F -0.143 7.143 9 N -0.270 5.270 10 C 0.132 3.868 11 N -0.338 5.338 12 C -0.038 4.038 13 C 0.011 3.989 14 C -0.583 4.583 15 H 0.078 0.922 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.197 1.197 22 N -0.215 5.215 23 H 0.279 0.721 24 H 0.143 0.857 25 H 0.119 0.881 26 H 0.146 0.854 27 H 0.216 0.784 28 H 0.062 0.938 29 H 0.075 0.925 30 H -0.008 1.008 31 H 0.008 0.992 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.365 14.273 -8.028 25.361 hybrid contribution 0.889 0.244 0.347 0.985 sum -18.476 14.516 -7.681 24.720 Atomic orbital electron populations 1.21435 0.81639 1.07656 1.07039 1.21859 0.97671 0.83226 0.83048 1.21018 0.90644 1.01299 1.20501 1.22066 0.94027 0.91746 0.91369 1.17933 0.77299 0.83634 0.74601 1.93258 1.33088 1.93850 1.95633 1.93247 1.89979 1.75586 1.54883 1.93247 1.94098 1.80803 1.46184 1.69168 1.38764 0.98091 1.20999 1.20083 0.83429 0.88256 0.95057 1.72628 1.11086 1.21446 1.28651 1.21574 0.84627 0.99343 0.98207 1.18809 0.94869 0.93715 0.91480 1.21605 0.92399 1.36651 1.07684 0.92171 1.26072 1.04729 0.94343 0.94653 1.70135 1.37879 1.38098 1.11343 0.85257 0.78051 0.78316 0.78549 1.18555 1.19980 1.19665 1.42425 1.04276 1.11088 1.63720 0.72113 0.85720 0.88136 0.85395 0.78367 0.93778 0.92487 1.00752 0.99202 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.11 10.15 71.24 0.72 0.61 16 2 C 0.26 3.58 6.85 41.29 0.28 3.86 16 3 C -0.30 -5.02 9.25 22.13 0.20 -4.82 16 4 C 0.18 4.95 6.30 43.07 0.27 5.22 16 5 C 0.52 13.61 3.33 71.23 0.24 13.85 16 6 F -0.18 -5.91 16.87 44.97 0.76 -5.15 16 7 F -0.16 -3.34 17.17 44.97 0.77 -2.57 16 8 F -0.16 -3.93 17.29 44.97 0.78 -3.15 16 9 N -0.55 -20.72 8.14 -185.61 -1.51 -22.23 16 10 C 0.50 18.44 8.42 261.57 2.20 20.64 16 11 N -0.61 -27.91 10.67 -351.21 -3.75 -31.66 16 12 C 0.09 4.93 6.27 86.38 0.54 5.47 16 13 C 0.05 3.05 5.30 29.85 0.16 3.21 16 14 C -0.55 -34.73 9.11 25.60 0.23 -34.49 16 15 H 0.06 3.69 7.74 -2.91 -0.02 3.67 16 16 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 17 N -0.93 -61.09 13.29 21.45 0.28 -60.81 16 18 Si 0.98 47.43 29.54 68.60 2.03 49.45 16 19 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 22 N -0.59 -13.47 5.41 -185.70 -1.01 -14.48 16 23 H 0.44 7.77 8.85 -92.71 -0.82 6.95 16 24 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 25 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 26 H 0.13 -0.40 8.09 -2.39 -0.02 -0.42 16 27 H 0.20 1.53 8.06 -2.91 -0.02 1.50 16 28 H 0.04 2.38 6.65 -2.39 -0.02 2.36 16 29 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 30 H -0.03 -1.76 8.14 -2.39 -0.02 -1.78 16 31 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 32 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -86.78 298.53 4.03 -82.75 By element: Atomic # 1 Polarization: -6.50 SS G_CDS: 0.35 Total: -6.15 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 5.32 Total: 13.99 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -5.98 Total: -129.18 kcal Atomic # 9 Polarization: -13.19 SS G_CDS: 2.31 Total: -10.88 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.45 kcal Total: -86.78 4.03 -82.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347868496.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.022 kcal (2) G-P(sol) polarization free energy of solvation -86.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds