Wall clock time and date at job start Mon Mar 30 2020 01:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48501 * 109.47355 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.46995 * 119.99813 * 3 2 1 6 6 H 1.48498 * 109.47101 * 239.99843 * 3 2 1 7 7 C 1.37870 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99951 * 192.35106 * 7 2 1 9 9 C 1.50699 * 120.00135 * 12.34615 * 7 2 1 10 10 O 1.42897 * 112.94201 * 53.29583 * 9 7 2 11 11 C 1.53940 * 113.74580 * 281.56155 * 9 7 2 12 12 N 1.47582 * 86.12128 * 222.04763 * 11 9 7 13 13 C 1.34768 * 134.49867 * 204.64205 * 12 11 9 14 14 O 1.21363 * 120.00477 * 179.97438 * 13 12 11 15 15 C 1.49301 * 119.99740 * 359.97438 * 13 12 11 16 16 O 1.21352 * 119.99765 * 6.09423 * 15 13 12 17 17 C 1.47392 * 119.99940 * 186.09603 * 15 13 12 18 18 C 1.39914 * 120.17543 * 6.22655 * 17 15 13 19 19 C 1.37849 * 119.82428 * 179.72120 * 18 17 15 20 20 C 1.38457 * 120.16928 * 0.55351 * 19 18 17 21 21 C 1.38441 * 120.35543 * 359.72349 * 20 19 18 22 22 C 1.37856 * 120.17406 * 359.97438 * 21 20 19 23 23 C 1.47584 * 91.01044 * 24.63912 * 12 11 9 24 24 H 0.96998 * 119.99915 * 185.52740 * 1 2 3 25 25 H 0.96702 * 114.00246 * 303.92595 * 10 9 7 26 26 H 1.09002 * 113.76697 * 336.34261 * 11 9 7 27 27 H 1.08994 * 113.77256 * 107.74325 * 11 9 7 28 28 H 1.08001 * 120.08908 * 359.97438 * 18 17 15 29 29 H 1.07994 * 119.91853 * 180.27512 * 19 18 17 30 30 H 1.08006 * 119.81856 * 179.69804 * 20 19 18 31 31 H 1.08000 * 119.91458 * 179.97438 * 21 20 19 32 32 H 1.08000 * 120.08991 * 179.97438 * 22 21 20 33 33 H 1.09012 * 113.76660 * 221.05880 * 23 12 11 34 34 H 1.09004 * 113.87128 * 89.68212 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0658 -1.2049 0.1995 9 6 1.2771 -2.4839 -0.2802 10 8 0.5304 -2.4495 -1.4980 11 6 0.4806 -3.0198 0.9232 12 7 0.9950 -4.3499 0.5436 13 6 0.5728 -5.6155 0.7339 14 8 1.2196 -6.5437 0.2944 15 6 -0.6907 -5.8759 1.4854 16 8 -1.3945 -4.9488 1.8288 17 6 -1.0833 -7.2589 1.8103 18 6 -0.2148 -8.3201 1.5328 19 6 -0.5870 -9.6102 1.8449 20 6 -1.8213 -9.8582 2.4211 21 6 -2.6887 -8.8142 2.6936 22 6 -2.3287 -7.5179 2.3930 23 6 2.1577 -3.7375 -0.1281 24 1 -0.4850 -0.8361 0.0809 25 1 -0.1100 -1.7266 -1.5465 26 1 0.8479 -2.6652 1.8862 27 1 -0.5993 -2.9192 0.8152 28 1 0.7463 -8.1287 1.0789 29 1 0.0841 -10.4300 1.6354 30 1 -2.1091 -10.8717 2.6589 31 1 -3.6499 -9.0159 3.1427 32 1 -3.0066 -6.7045 2.6058 33 1 2.4167 -4.2100 -1.0758 34 1 3.0187 -3.5932 0.5245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356551717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:46 Heat of formation + Delta-G solvation = -43.672498 kcal Electronic energy + Delta-G solvation = -20655.854976 eV Core-core repulsion = 17327.821237 eV Total energy + Delta-G solvation = -3328.033739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58632 -39.26040 -38.10900 -37.55798 -34.41983 -32.39769 -31.39740 -31.05750 -29.07880 -25.96018 -25.60753 -24.57838 -22.74399 -21.87621 -20.14001 -18.76461 -18.12446 -17.18789 -16.73579 -16.38008 -15.57824 -15.37227 -14.71204 -14.70607 -14.28447 -14.20605 -13.95739 -13.71992 -13.43306 -12.80485 -12.74597 -12.56952 -12.24081 -11.84058 -11.71000 -11.51710 -11.17221 -10.98248 -10.82151 -10.54410 -10.22893 -9.38908 -9.22238 -9.11784 -9.06891 -8.84025 -8.49733 -8.04983 -6.70345 -4.51458 0.39834 1.29236 1.76628 2.88196 3.25633 3.30086 3.34082 3.51979 3.80922 4.14756 4.31396 4.67104 4.78514 4.80647 4.91834 5.01126 5.23890 5.31634 5.39182 5.62230 5.71861 5.84474 5.95278 6.10451 6.19900 6.23500 6.26194 6.30262 6.39197 6.40950 6.71120 6.79237 7.17114 7.59467 8.03768 8.05287 8.26987 8.42416 8.79028 9.19793 10.61164 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.042236 B = 0.004055 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.780733 B = 6903.888541 C = 7285.876080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.037 3.963 3 Si 1.069 2.931 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.619 4.619 8 H 0.067 0.933 9 C 0.214 3.786 10 O -0.567 6.567 11 C 0.073 3.927 12 N -0.602 5.602 13 C 0.496 3.504 14 O -0.537 6.537 15 C 0.391 3.609 16 O -0.416 6.416 17 C -0.162 4.162 18 C -0.063 4.063 19 C -0.142 4.142 20 C -0.087 4.087 21 C -0.143 4.143 22 C -0.058 4.058 23 C 0.121 3.879 24 H 0.269 0.731 25 H 0.377 0.623 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.168 0.832 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.604 -13.604 5.082 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.170 4.170 3 Si 0.896 3.104 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.657 4.657 8 H 0.085 0.915 9 C 0.173 3.827 10 O -0.374 6.374 11 C -0.049 4.049 12 N -0.335 5.335 13 C 0.282 3.718 14 O -0.418 6.418 15 C 0.263 3.737 16 O -0.287 6.287 17 C -0.164 4.164 18 C -0.081 4.081 19 C -0.160 4.160 20 C -0.105 4.105 21 C -0.161 4.161 22 C -0.077 4.077 23 C 0.000 4.000 24 H 0.081 0.919 25 H 0.227 0.773 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.185 0.815 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.096 0.904 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.568 -12.645 4.862 13.789 hybrid contribution -0.241 -1.345 0.345 1.409 sum -2.809 -13.990 5.207 15.189 Atomic orbital electron populations 1.70937 1.06968 1.30816 1.44483 1.26014 0.96228 1.03097 0.91616 0.83545 0.75101 0.74852 0.76942 1.20518 1.21079 1.20987 1.22199 0.97288 0.91636 1.54534 0.91509 1.20172 0.88139 0.92979 0.81381 1.86232 1.56707 1.55395 1.39095 1.24666 1.00948 0.77116 1.02214 1.50297 1.26556 1.04555 1.52062 1.20287 0.87016 0.82418 0.82034 1.90491 1.57959 1.41697 1.51616 1.22635 0.85089 0.88939 0.77024 1.90570 1.50734 1.46190 1.41232 1.20168 0.96949 0.93551 1.05719 1.22604 1.01055 0.91418 0.92995 1.21270 0.97002 0.97123 1.00632 1.21495 0.93799 0.99173 0.96037 1.21082 1.00324 0.92375 1.02294 1.21427 0.94769 0.97476 0.93991 1.23496 0.89582 0.90456 0.96434 0.91890 0.77321 0.89074 0.90387 0.81475 0.85372 0.85732 0.85417 0.84893 0.90383 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.83 12.81 55.43 0.71 -23.12 16 2 C 0.04 0.93 5.28 -17.82 -0.09 0.84 16 3 Si 1.07 22.68 29.92 -169.99 -5.09 17.60 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.62 -15.61 8.57 -34.44 -0.30 -15.91 16 8 H 0.07 1.65 7.85 -52.48 -0.41 1.24 16 9 C 0.21 5.08 1.08 -90.85 -0.10 4.98 16 10 O -0.57 -14.04 13.46 -35.23 -0.47 -14.52 16 11 C 0.07 1.61 6.30 -2.98 -0.02 1.59 16 12 N -0.60 -12.75 3.61 -178.87 -0.65 -13.39 16 13 C 0.50 9.96 8.04 -11.66 -0.09 9.87 16 14 O -0.54 -10.98 14.24 5.49 0.08 -10.90 16 15 C 0.39 7.09 7.16 -31.25 -0.22 6.86 16 16 O -0.42 -8.11 15.07 5.49 0.08 -8.03 16 17 C -0.16 -2.49 5.88 -104.92 -0.62 -3.10 16 18 C -0.06 -0.89 9.25 -39.10 -0.36 -1.25 16 19 C -0.14 -1.57 10.03 -39.64 -0.40 -1.97 16 20 C -0.09 -0.84 10.04 -39.43 -0.40 -1.24 16 21 C -0.14 -1.48 10.03 -39.65 -0.40 -1.88 16 22 C -0.06 -0.76 9.60 -39.10 -0.38 -1.13 16 23 C 0.12 2.57 8.22 -2.97 -0.02 2.55 16 24 H 0.27 7.05 5.47 -40.82 -0.22 6.83 16 25 H 0.38 9.20 6.83 45.56 0.31 9.51 16 26 H 0.09 1.98 8.09 -51.93 -0.42 1.56 16 27 H 0.08 1.77 6.99 -51.93 -0.36 1.41 16 28 H 0.17 2.58 4.99 -52.49 -0.26 2.32 16 29 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 31 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.13 1.65 7.67 -52.49 -0.40 1.25 16 33 H 0.08 1.63 8.14 -51.92 -0.42 1.21 16 34 H 0.10 1.86 8.09 -51.93 -0.42 1.44 16 LS Contribution 298.20 15.07 4.49 4.49 Total: -1.00 -28.79 298.20 -6.91 -35.70 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -2.68 Total: 11.96 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.39 Total: 0.20 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.07 Total: -36.51 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.31 Total: -33.44 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.09 Total: 17.60 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.79 -6.91 -35.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356551717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.970 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds