Wall clock time and date at job start Mon Mar 30 2020 01:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48501 * 109.47355 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.46995 * 119.99813 * 3 2 1 6 6 H 1.48498 * 109.47101 * 239.99843 * 3 2 1 7 7 C 1.37870 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99951 * 192.35106 * 7 2 1 9 9 C 1.50699 * 120.00135 * 12.34615 * 7 2 1 10 10 O 1.42897 * 112.94201 * 53.29583 * 9 7 2 11 11 C 1.53940 * 113.74580 * 281.56155 * 9 7 2 12 12 N 1.47582 * 86.12128 * 222.04763 * 11 9 7 13 13 C 1.34768 * 134.49867 * 204.64205 * 12 11 9 14 14 O 1.21363 * 120.00477 * 179.97438 * 13 12 11 15 15 C 1.49301 * 119.99740 * 359.97438 * 13 12 11 16 16 O 1.21352 * 119.99765 * 6.09423 * 15 13 12 17 17 C 1.47392 * 119.99940 * 186.09603 * 15 13 12 18 18 C 1.39914 * 120.17543 * 6.22655 * 17 15 13 19 19 C 1.37849 * 119.82428 * 179.72120 * 18 17 15 20 20 C 1.38457 * 120.16928 * 0.55351 * 19 18 17 21 21 C 1.38441 * 120.35543 * 359.72349 * 20 19 18 22 22 C 1.37856 * 120.17406 * 359.97438 * 21 20 19 23 23 C 1.47584 * 91.01044 * 24.63912 * 12 11 9 24 24 H 0.96998 * 119.99915 * 185.52740 * 1 2 3 25 25 H 0.96702 * 114.00246 * 303.92595 * 10 9 7 26 26 H 1.09002 * 113.76697 * 336.34261 * 11 9 7 27 27 H 1.08994 * 113.77256 * 107.74325 * 11 9 7 28 28 H 1.08001 * 120.08908 * 359.97438 * 18 17 15 29 29 H 1.07994 * 119.91853 * 180.27512 * 19 18 17 30 30 H 1.08006 * 119.81856 * 179.69804 * 20 19 18 31 31 H 1.08000 * 119.91458 * 179.97438 * 21 20 19 32 32 H 1.08000 * 120.08991 * 179.97438 * 22 21 20 33 33 H 1.09012 * 113.76660 * 221.05880 * 23 12 11 34 34 H 1.09004 * 113.87128 * 89.68212 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0658 -1.2049 0.1995 9 6 1.2771 -2.4839 -0.2802 10 8 0.5304 -2.4495 -1.4980 11 6 0.4806 -3.0198 0.9232 12 7 0.9950 -4.3499 0.5436 13 6 0.5728 -5.6155 0.7339 14 8 1.2196 -6.5437 0.2944 15 6 -0.6907 -5.8759 1.4854 16 8 -1.3945 -4.9488 1.8288 17 6 -1.0833 -7.2589 1.8103 18 6 -0.2148 -8.3201 1.5328 19 6 -0.5870 -9.6102 1.8449 20 6 -1.8213 -9.8582 2.4211 21 6 -2.6887 -8.8142 2.6936 22 6 -2.3287 -7.5179 2.3930 23 6 2.1577 -3.7375 -0.1281 24 1 -0.4850 -0.8361 0.0809 25 1 -0.1100 -1.7266 -1.5465 26 1 0.8479 -2.6652 1.8862 27 1 -0.5993 -2.9192 0.8152 28 1 0.7463 -8.1287 1.0789 29 1 0.0841 -10.4300 1.6354 30 1 -2.1091 -10.8717 2.6589 31 1 -3.6499 -9.0159 3.1427 32 1 -3.0066 -6.7045 2.6058 33 1 2.4167 -4.2100 -1.0758 34 1 3.0187 -3.5932 0.5245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356551717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:45 Heat of formation + Delta-G solvation = -62.908269 kcal Electronic energy + Delta-G solvation = -20656.689102 eV Core-core repulsion = 17327.821237 eV Total energy + Delta-G solvation = -3328.867865 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.08335 -40.72601 -39.29342 -39.20121 -36.27729 -34.36211 -32.42590 -31.97727 -30.80524 -27.57688 -27.38858 -26.12939 -23.75984 -23.13018 -21.75717 -20.40693 -19.90262 -18.44994 -18.29435 -17.71466 -17.22331 -16.74413 -16.36182 -16.20451 -15.68199 -15.54547 -15.33442 -15.18350 -14.53741 -14.48464 -14.41489 -13.96607 -13.62075 -13.57838 -13.06527 -12.90011 -12.67737 -12.58481 -12.40889 -11.94383 -11.90641 -11.23546 -10.85967 -10.69946 -10.22635 -10.07165 -10.00397 -9.83689 -8.71036 -6.53352 -0.82095 0.37919 0.51873 1.33335 1.61195 1.64894 1.84150 1.86423 2.54061 2.61008 2.78375 2.89592 3.37988 3.51772 3.79793 3.90854 4.02030 4.14340 4.20805 4.33435 4.41795 4.43907 4.44049 4.58255 4.59587 4.82529 4.87639 5.06799 5.25985 5.36467 5.44380 5.66164 5.80135 5.89852 6.04978 6.36339 6.40444 6.66177 6.84003 7.24849 8.60932 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.042236 B = 0.004055 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.780733 B = 6903.888541 C = 7285.876080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 1.115 2.885 4 H -0.286 1.286 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.631 4.631 8 H 0.070 0.930 9 C 0.197 3.803 10 O -0.576 6.576 11 C 0.087 3.913 12 N -0.609 5.609 13 C 0.489 3.511 14 O -0.541 6.541 15 C 0.393 3.607 16 O -0.441 6.441 17 C -0.190 4.190 18 C -0.079 4.079 19 C -0.141 4.141 20 C -0.069 4.069 21 C -0.136 4.136 22 C -0.067 4.067 23 C 0.125 3.875 24 H 0.261 0.739 25 H 0.375 0.625 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.148 0.852 29 H 0.156 0.844 30 H 0.168 0.832 31 H 0.163 0.837 32 H 0.132 0.868 33 H 0.077 0.923 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.807 -15.702 6.058 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.206 4.206 3 Si 0.937 3.063 4 H -0.211 1.211 5 H -0.193 1.193 6 H -0.199 1.199 7 C -0.669 4.669 8 H 0.088 0.912 9 C 0.156 3.844 10 O -0.384 6.384 11 C -0.036 4.036 12 N -0.343 5.343 13 C 0.277 3.723 14 O -0.421 6.421 15 C 0.268 3.732 16 O -0.315 6.315 17 C -0.191 4.191 18 C -0.097 4.097 19 C -0.158 4.158 20 C -0.087 4.087 21 C -0.153 4.153 22 C -0.085 4.085 23 C 0.004 3.996 24 H 0.073 0.927 25 H 0.224 0.776 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.166 0.834 29 H 0.173 0.827 30 H 0.185 0.815 31 H 0.180 0.820 32 H 0.149 0.851 33 H 0.096 0.904 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.755 -14.789 5.837 16.137 hybrid contribution -0.207 -0.882 0.050 0.907 sum -2.962 -15.671 5.887 17.000 Atomic orbital electron populations 1.71018 1.07769 1.30489 1.46113 1.27236 0.96319 1.06188 0.90823 0.82944 0.74226 0.71247 0.77933 1.21129 1.19286 1.19937 1.22468 0.97564 0.92483 1.54365 0.91222 1.20398 0.88920 0.93699 0.81396 1.86215 1.56805 1.55340 1.39998 1.24362 0.99928 0.77726 1.01545 1.50304 1.26623 1.04764 1.52584 1.20857 0.87750 0.81817 0.81900 1.90494 1.58343 1.41626 1.51679 1.22769 0.83845 0.90397 0.76163 1.90553 1.51165 1.47147 1.42617 1.20054 0.98722 0.91811 1.08541 1.22482 1.00325 0.92752 0.94125 1.21600 0.98194 0.96276 0.99766 1.22010 0.92398 1.00999 0.93280 1.21512 1.01751 0.91087 1.00993 1.21575 0.93808 0.99089 0.94074 1.23496 0.89897 0.89211 0.96965 0.92713 0.77580 0.89065 0.91594 0.83449 0.82683 0.81475 0.81991 0.85058 0.90418 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.59 12.81 21.45 0.27 -49.32 16 2 C 0.00 -0.22 5.28 84.65 0.45 0.22 16 3 Si 1.12 45.37 29.92 68.60 2.05 47.42 16 4 H -0.29 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 7 C -0.63 -32.02 8.57 25.60 0.22 -31.80 16 8 H 0.07 3.42 7.85 -2.91 -0.02 3.39 16 9 C 0.20 9.49 1.08 -10.88 -0.01 9.48 16 10 O -0.58 -29.35 13.46 -148.98 -2.00 -31.35 16 11 C 0.09 3.98 6.30 86.48 0.54 4.52 16 12 N -0.61 -26.42 3.61 -841.99 -3.04 -29.46 16 13 C 0.49 20.19 8.04 87.22 0.70 20.89 16 14 O -0.54 -22.53 14.24 -3.29 -0.05 -22.58 16 15 C 0.39 14.73 7.16 27.66 0.20 14.93 16 16 O -0.44 -17.90 15.07 -3.25 -0.05 -17.95 16 17 C -0.19 -5.80 5.88 -20.06 -0.12 -5.92 16 18 C -0.08 -2.17 9.25 22.58 0.21 -1.96 16 19 C -0.14 -2.68 10.03 22.23 0.22 -2.45 16 20 C -0.07 -1.02 10.04 22.37 0.22 -0.80 16 21 C -0.14 -2.31 10.03 22.23 0.22 -2.09 16 22 C -0.07 -1.66 9.60 22.58 0.22 -1.44 16 23 C 0.13 5.36 8.22 86.48 0.71 6.07 16 24 H 0.26 14.15 5.47 -92.71 -0.51 13.65 16 25 H 0.37 19.02 6.83 -74.06 -0.51 18.51 16 26 H 0.09 4.09 8.09 -2.39 -0.02 4.08 16 27 H 0.07 3.14 6.99 -2.39 -0.02 3.12 16 28 H 0.15 4.59 4.99 -2.91 -0.01 4.58 16 29 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.13 3.21 7.67 -2.91 -0.02 3.18 16 33 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 34 H 0.12 4.41 8.09 -2.39 -0.02 4.39 16 Total: -1.00 -62.93 298.20 1.88 -61.05 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.90 Total: 32.52 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 3.79 Total: 9.67 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -2.76 Total: -78.78 kcal Atomic # 8 Polarization: -69.78 SS G_CDS: -2.10 Total: -71.88 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.05 Total: 47.42 kcal Total: -62.93 1.88 -61.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356551717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.860 kcal (2) G-P(sol) polarization free energy of solvation -62.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds