Wall clock time and date at job start Mon Mar 30 2020 01:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99805 * 2 1 4 4 H 1.48499 * 109.47038 * 269.99955 * 3 2 1 5 5 H 1.48503 * 109.46944 * 29.99824 * 3 2 1 6 6 H 1.48497 * 109.46842 * 149.99624 * 3 2 1 7 7 C 1.37881 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99385 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99881 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46816 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47272 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47017 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.54374 * 68.37919 * 12 11 10 14 14 O 1.42100 * 110.54436 * 291.62445 * 12 11 10 15 15 N 1.65610 * 104.44724 * 180.02562 * 12 11 10 16 16 C 1.46048 * 120.06769 * 89.99908 * 15 12 11 17 17 C 1.51871 * 111.11341 * 216.83246 * 16 15 12 18 18 O 1.41195 * 113.23422 * 306.06068 * 17 16 15 19 19 C 1.42226 * 117.91826 * 47.99893 * 18 17 16 20 20 H 1.08997 * 115.54412 * 124.94995 * 19 18 17 21 21 C 1.53523 * 116.42809 * 268.85096 * 19 18 17 22 22 C 1.46373 * 120.06612 * 269.97738 * 15 12 11 23 23 H 1.08997 * 115.48169 * 23.82715 * 22 15 12 24 24 H 0.96995 * 120.00054 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47554 * 60.00707 * 9 7 2 26 26 H 1.09000 * 109.47204 * 299.99576 * 9 7 2 27 27 H 1.09008 * 109.47195 * 60.00174 * 10 9 7 28 28 H 1.08997 * 109.47401 * 300.00320 * 10 9 7 29 29 H 1.09008 * 109.46662 * 60.00100 * 11 10 9 30 30 H 1.08997 * 109.47375 * 300.00589 * 11 10 9 31 31 H 1.08996 * 109.14649 * 96.40917 * 16 15 12 32 32 H 1.08996 * 109.15061 * 337.25554 * 16 15 12 33 33 H 1.08998 * 108.73073 * 185.09697 * 17 16 15 34 34 H 1.08994 * 108.63656 * 66.96410 * 17 16 15 35 35 H 1.09001 * 117.49897 * 1.93043 * 21 19 18 36 36 H 1.09003 * 117.51459 * 216.90316 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0009 12 16 6.1563 -4.3466 0.0016 13 8 5.8603 -4.9807 -1.2352 14 8 5.8603 -4.9798 1.2388 15 7 7.8061 -4.2016 0.0022 16 6 8.5345 -4.1372 1.2664 17 6 9.7108 -3.1813 1.1719 18 8 10.5780 -3.4698 0.0957 19 6 9.9994 -3.6945 -1.1840 20 1 10.3790 -3.0649 -1.9886 21 6 9.6478 -5.1485 -1.5291 22 6 8.5371 -4.1382 -1.2643 23 1 7.9607 -3.7904 -2.1216 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6800 0.8912 26 1 3.8752 -0.6803 -0.8889 27 1 3.6587 -3.1501 -0.8893 28 1 3.6580 -3.1505 0.8906 29 1 5.9150 -2.1226 0.8910 30 1 5.9150 -2.1224 -0.8889 31 1 8.9015 -5.1321 1.5186 32 1 7.8592 -3.7968 2.0512 33 1 10.2780 -3.2312 2.1014 34 1 9.3275 -2.1682 1.0506 35 1 9.8319 -5.9054 -0.7667 36 1 9.7986 -5.4722 -2.5590 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366288179.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:21 Heat of formation + Delta-G solvation = -111.985705 kcal Electronic energy + Delta-G solvation = -19735.524626 eV Core-core repulsion = 16539.972555 eV Total energy + Delta-G solvation = -3195.552071 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93789 -38.36819 -37.16118 -36.54858 -36.29944 -34.99327 -34.26932 -30.20081 -29.67925 -25.45483 -25.36377 -23.29609 -22.35923 -21.37781 -19.69543 -19.11879 -18.98254 -18.29717 -17.51102 -16.95938 -16.73000 -16.31237 -16.18547 -15.82939 -15.24596 -15.01711 -14.86612 -14.12936 -13.95305 -13.70341 -13.47563 -13.31684 -13.26725 -13.22258 -13.11170 -12.71988 -12.59629 -12.36584 -12.01178 -11.87777 -11.85646 -11.66774 -11.42753 -11.16280 -10.78508 -10.41532 -9.75084 -8.30816 -6.37117 -0.92157 1.36396 1.38946 1.43450 1.50412 2.35551 2.44536 2.71750 2.87342 3.00882 3.04475 3.43539 3.52049 3.72253 3.79052 3.85850 4.00452 4.11392 4.25512 4.29126 4.38397 4.55370 4.65185 4.79374 4.85350 4.89915 4.92534 5.10005 5.11846 5.31298 5.41095 5.44534 5.61181 6.23845 6.33057 6.71295 7.27752 8.86220 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.027602 B = 0.004435 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.179271 B = 6311.517092 C = 6726.201796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.238 1.238 7 C -0.545 4.545 8 H 0.029 0.971 9 C -0.004 4.004 10 C -0.104 4.104 11 C -0.604 4.604 12 S 2.619 3.381 13 O -0.981 6.981 14 O -0.984 6.984 15 N -0.971 5.971 16 C 0.074 3.926 17 C 0.056 3.944 18 O -0.367 6.367 19 C 0.032 3.968 20 H 0.165 0.835 21 C -0.201 4.201 22 C 0.045 3.955 23 H 0.156 0.844 24 H 0.267 0.733 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.363 -4.400 -0.621 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.161 1.161 7 C -0.583 4.583 8 H 0.048 0.952 9 C -0.043 4.043 10 C -0.144 4.144 11 C -0.736 4.736 12 S 2.718 3.282 13 O -0.971 6.971 14 O -0.975 6.975 15 N -0.806 5.806 16 C -0.051 4.051 17 C -0.022 4.022 18 O -0.285 6.285 19 C -0.028 4.028 20 H 0.182 0.818 21 C -0.240 4.240 22 C -0.061 4.061 23 H 0.174 0.826 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.173 0.827 30 H 0.174 0.826 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 24.934 -5.162 -0.541 25.468 hybrid contribution -0.798 0.955 0.085 1.247 sum 24.136 -4.207 -0.456 24.504 Atomic orbital electron populations 1.70082 1.08561 1.28351 1.52288 1.26112 0.95674 1.03888 0.93830 0.85596 0.79695 0.77574 0.79408 1.18910 1.21160 1.16110 1.21552 0.92368 0.93282 1.51124 0.95239 1.19501 0.93676 0.93333 0.97793 1.21198 0.90331 1.00594 1.02228 1.30518 1.05420 1.23595 1.14067 1.04722 0.72431 0.78079 0.72970 1.93535 1.83291 1.74061 1.46240 1.93539 1.83342 1.74134 1.46456 1.56865 1.23638 1.89203 1.10928 1.21830 0.96457 1.02097 0.84675 1.22413 0.91455 0.97452 0.90880 1.87125 1.34237 1.90859 1.16247 1.23678 0.93837 0.97736 0.87505 0.81785 1.24032 1.01402 0.93922 1.04680 1.22158 0.90286 1.06164 0.87535 0.82636 0.92405 0.94883 0.94995 0.91814 0.91863 0.82695 0.82562 0.91153 0.87152 0.85301 0.91630 0.89150 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 2 C 0.00 0.10 5.47 84.66 0.46 0.56 16 3 Si 0.95 42.58 27.47 68.60 1.88 44.47 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.24 -9.47 6.54 99.48 0.65 -8.82 16 7 C -0.55 -31.29 9.66 25.60 0.25 -31.04 16 8 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 9 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 10 C -0.10 -3.88 5.16 30.60 0.16 -3.72 16 11 C -0.60 -15.19 6.18 71.98 0.44 -14.74 16 12 S 2.62 70.64 5.37 -56.49 -0.30 70.33 16 13 O -0.98 -32.40 17.12 -127.65 -2.19 -34.59 16 14 O -0.98 -32.51 16.93 -127.65 -2.16 -34.67 16 15 N -0.97 -19.69 3.40 -497.64 -1.69 -21.38 16 16 C 0.07 1.25 6.05 86.09 0.52 1.77 16 17 C 0.06 0.74 6.91 71.61 0.49 1.24 16 18 O -0.37 -6.22 10.57 -148.07 -1.57 -7.79 16 19 C 0.03 0.46 7.15 30.78 0.22 0.68 16 20 H 0.17 1.44 8.14 -2.39 -0.02 1.42 16 21 C -0.20 -3.10 10.25 30.59 0.31 -2.79 16 22 C 0.05 0.78 5.94 44.84 0.27 1.05 16 23 H 0.16 2.27 7.92 -2.39 -0.02 2.25 16 24 H 0.27 15.56 8.31 -92.71 -0.77 14.78 16 25 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 26 H 0.03 1.31 7.57 -2.39 -0.02 1.30 16 27 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 28 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.16 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.16 3.09 8.14 -2.39 -0.02 3.08 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.11 1.62 7.50 -2.39 -0.02 1.60 16 33 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -78.32 310.28 -1.47 -79.79 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.00 Total: 10.38 kcal Atomic # 6 Polarization: -50.33 SS G_CDS: 3.25 Total: -47.08 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -1.39 Total: -80.85 kcal Atomic # 8 Polarization: -71.13 SS G_CDS: -5.91 Total: -77.05 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.88 Total: 44.47 kcal Atomic # 16 Polarization: 70.64 SS G_CDS: -0.30 Total: 70.33 kcal Total: -78.32 -1.47 -79.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366288179.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.192 kcal (2) G-P(sol) polarization free energy of solvation -78.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds