Wall clock time and date at job start Mon Mar 30 2020 02:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47032 * 250.35276 * 3 2 1 5 5 C 1.36852 * 120.00114 * 264.24708 * 4 3 2 6 6 H 1.07995 * 119.99817 * 201.07864 * 5 4 3 7 7 C 1.39033 * 119.99825 * 21.07859 * 5 4 3 8 8 N 1.31386 * 119.99996 * 29.79746 * 7 5 4 9 9 Si 1.86801 * 119.99650 * 209.79861 * 7 5 4 10 10 H 1.48495 * 109.47010 * 90.00166 * 9 7 5 11 11 H 1.48505 * 109.46910 * 209.99885 * 9 7 5 12 12 H 1.48497 * 109.47010 * 329.99961 * 9 7 5 13 13 C 1.34776 * 119.99510 * 84.25246 * 4 3 2 14 14 O 1.21741 * 119.99340 * 183.96321 * 13 4 3 15 15 C 1.46511 * 120.00376 * 3.95289 * 13 4 3 16 16 O 1.35400 * 126.12509 * 354.21123 * 15 13 4 17 17 C 1.34433 * 109.47127 * 179.97438 * 16 15 13 18 18 C 1.33934 * 108.57277 * 359.95906 * 17 16 15 19 19 C 1.35312 * 126.12598 * 174.16050 * 15 13 4 20 20 C 1.50485 * 130.60650 * 0.31089 * 19 15 13 21 21 C 1.53678 * 107.55855 * 164.09877 * 20 19 15 22 22 O 1.42895 * 109.89287 * 48.26669 * 21 20 19 23 23 C 1.43520 * 114.76022 * 287.68335 * 22 21 20 24 24 H 4.40641 * 5.51407 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.47091 * 130.35671 * 3 2 1 26 26 H 1.08994 * 109.47559 * 10.35696 * 3 2 1 27 27 H 0.97004 * 119.99652 * 179.97438 * 8 7 5 28 28 H 1.08001 * 125.71263 * 179.97438 * 17 16 15 29 29 H 1.08997 * 109.74239 * 44.61150 * 20 19 15 30 30 H 1.09003 * 109.86931 * 283.65300 * 20 19 15 31 31 H 1.08997 * 109.38992 * 288.15563 * 21 20 19 32 32 H 1.09006 * 109.38555 * 168.36316 * 21 20 19 33 33 H 1.09001 * 109.82362 * 171.03937 * 23 22 21 34 34 H 1.08999 * 109.82247 * 291.89822 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1340 0.4653 1.3009 5 6 3.4735 1.7796 1.4747 6 1 4.1338 2.0647 2.2803 7 6 2.9684 2.7477 0.6141 8 7 1.7939 2.5772 0.0504 9 14 3.9597 4.2907 0.2593 10 1 4.8351 4.0571 -0.9172 11 1 3.0358 5.4176 -0.0271 12 1 4.7960 4.6242 1.4402 13 6 3.2488 -0.4017 2.3263 14 8 3.5852 -0.0025 3.4261 15 6 2.9685 -1.8245 2.1176 16 8 2.4828 -2.3846 0.9846 17 6 2.3543 -3.7113 1.1600 18 6 2.7544 -4.0183 2.4007 19 6 3.1496 -2.8144 3.0222 20 6 3.6570 -2.7664 4.4381 21 6 3.2791 -4.0953 5.1113 22 8 3.6440 -5.1890 4.2671 23 6 2.8203 -5.3505 3.1030 24 1 -1.0501 -0.0002 -0.0001 25 1 3.0090 0.6663 -0.7831 26 1 3.0098 -1.0100 -0.1847 27 1 1.4414 3.2529 -0.5497 28 1 1.9896 -4.4121 0.4236 29 1 3.1902 -1.9366 4.9687 30 1 4.7403 -2.6455 4.4396 31 1 2.2040 -4.1181 5.2888 32 1 3.8047 -4.1814 6.0624 33 1 3.2586 -6.0972 2.4408 34 1 1.8186 -5.6619 3.3992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367631060.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:07 Heat of formation + Delta-G solvation = 12.162692 kcal Electronic energy + Delta-G solvation = -21391.749783 eV Core-core repulsion = 18066.137239 eV Total energy + Delta-G solvation = -3325.612544 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.31265 -38.48194 -38.23752 -35.35411 -33.13820 -32.29181 -31.65647 -31.30748 -28.83154 -26.59829 -25.92473 -25.15576 -23.22078 -21.90885 -19.47685 -19.07065 -17.96125 -17.25080 -16.53534 -16.05532 -15.85316 -15.68983 -15.00818 -14.87424 -14.56242 -14.25920 -13.84082 -13.21942 -13.16153 -12.69357 -12.48945 -12.37812 -12.31533 -11.80920 -11.56193 -11.25769 -11.09342 -10.71248 -10.59681 -10.44202 -9.70523 -9.44571 -9.28245 -9.08825 -8.93742 -8.69625 -8.13409 -7.96056 -6.53611 -3.96529 1.74512 2.64610 3.10743 3.18673 3.22767 3.35439 3.69947 3.89045 4.02506 4.10814 4.17963 4.76080 4.79937 4.92768 5.08647 5.19896 5.35184 5.39160 5.45600 5.48876 5.54774 5.72808 5.96588 6.12136 6.19593 6.27254 6.44619 6.46799 6.62910 6.82005 6.96578 7.19396 7.36712 7.40693 7.94114 8.26825 8.82089 8.94690 9.15695 9.74197 10.45476 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.028364 B = 0.005706 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.945864 B = 4905.711840 C = 5575.511101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.115 4.115 3 C 0.224 3.776 4 N -0.412 5.412 5 C -0.324 4.324 6 H 0.110 0.890 7 C 0.040 3.960 8 N -0.829 5.829 9 Si 0.918 3.082 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.564 6.564 15 C -0.012 4.012 16 O -0.160 6.160 17 C -0.025 4.025 18 C -0.234 4.234 19 C -0.130 4.130 20 C -0.077 4.077 21 C 0.065 3.935 22 O -0.383 6.383 23 C 0.139 3.861 24 H 0.199 0.801 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.272 0.728 28 H 0.199 0.801 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -11.809 -0.026 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.117 4.117 3 C 0.101 3.899 4 N -0.127 5.127 5 C -0.450 4.450 6 H 0.128 0.872 7 C -0.169 4.169 8 N -0.463 5.463 9 Si 0.744 3.256 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.190 1.190 13 C 0.296 3.704 14 O -0.450 6.450 15 C -0.064 4.064 16 O -0.057 6.057 17 C -0.094 4.094 18 C -0.236 4.236 19 C -0.134 4.134 20 C -0.114 4.114 21 C -0.012 4.012 22 O -0.302 6.302 23 C 0.062 3.938 24 H 0.216 0.784 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.216 0.784 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.244 -11.408 0.152 11.411 hybrid contribution -0.349 0.923 -0.487 1.100 sum -0.592 -10.485 -0.335 10.507 Atomic orbital electron populations 1.24200 0.95281 1.05958 1.01418 1.22877 0.94086 0.95667 0.99037 1.18418 0.84958 0.98813 0.87724 1.43681 1.53080 1.08515 1.07413 1.19686 1.27379 0.80877 1.17092 0.87247 1.25418 0.94611 0.99427 0.97423 1.70219 1.12693 1.35823 1.27583 0.86058 0.79841 0.80352 0.79372 1.20002 1.20926 1.19000 1.16416 0.87153 0.81794 0.85030 1.90687 1.54596 1.76347 1.23370 1.22218 1.04319 0.94960 0.84897 1.84647 1.65327 1.19861 1.35820 1.23437 1.04667 0.83553 0.97781 1.20836 1.08933 0.97572 0.96222 1.19876 1.04767 0.90993 0.97742 1.20657 1.01808 0.98032 0.90932 1.22693 0.99653 0.85872 0.92997 1.87921 1.56797 1.49954 1.35536 1.20940 0.94847 0.92012 0.85957 0.78370 0.88356 0.89799 0.91705 0.78388 0.88727 0.90015 0.93149 0.88583 0.88178 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.34 19.25 29.55 0.57 -4.77 16 2 C -0.12 -2.66 10.54 -37.13 -0.39 -3.05 16 3 C 0.22 5.09 4.76 -6.83 -0.03 5.06 16 4 N -0.41 -10.63 2.58 -119.48 -0.31 -10.93 16 5 C -0.32 -8.78 9.15 -15.02 -0.14 -8.92 16 6 H 0.11 3.09 7.54 -52.49 -0.40 2.70 16 7 C 0.04 1.02 4.59 -17.45 -0.08 0.94 16 8 N -0.83 -21.49 10.20 55.50 0.57 -20.92 16 9 Si 0.92 19.64 29.64 -169.99 -5.04 14.60 16 10 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 13 C 0.51 12.99 7.52 -12.93 -0.10 12.89 16 14 O -0.56 -15.72 15.29 5.15 0.08 -15.64 16 15 C -0.01 -0.26 6.73 -37.29 -0.25 -0.51 16 16 O -0.16 -3.06 6.68 2.23 0.01 -3.05 16 17 C -0.03 -0.38 12.06 29.22 0.35 -0.03 16 18 C -0.23 -3.72 6.04 -105.02 -0.63 -4.36 16 19 C -0.13 -2.52 6.02 -104.67 -0.63 -3.15 16 20 C -0.08 -1.34 5.75 -27.64 -0.16 -1.50 16 21 C 0.06 0.90 6.76 37.51 0.25 1.15 16 22 O -0.38 -5.62 10.70 -35.23 -0.38 -6.00 16 23 C 0.14 1.77 7.27 36.03 0.26 2.03 16 24 H 0.20 3.47 7.80 -54.09 -0.42 3.04 16 25 H 0.10 2.26 6.94 -51.93 -0.36 1.90 16 26 H 0.08 1.72 5.31 -51.93 -0.28 1.45 16 27 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.09 1.76 7.54 -51.93 -0.39 1.37 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -31.76 295.01 -5.11 -36.86 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.51 Total: 4.85 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.98 Total: -4.21 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.26 Total: -31.86 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.28 Total: -24.69 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.04 Total: 14.60 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.76 -5.11 -36.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367631060.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.026 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds