Wall clock time and date at job start Mon Mar 30 2020 02:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47032 * 250.35276 * 3 2 1 5 5 C 1.36852 * 120.00114 * 264.24708 * 4 3 2 6 6 H 1.07995 * 119.99817 * 201.07864 * 5 4 3 7 7 C 1.39033 * 119.99825 * 21.07859 * 5 4 3 8 8 N 1.31386 * 119.99996 * 29.79746 * 7 5 4 9 9 Si 1.86801 * 119.99650 * 209.79861 * 7 5 4 10 10 H 1.48495 * 109.47010 * 90.00166 * 9 7 5 11 11 H 1.48505 * 109.46910 * 209.99885 * 9 7 5 12 12 H 1.48497 * 109.47010 * 329.99961 * 9 7 5 13 13 C 1.34776 * 119.99510 * 84.25246 * 4 3 2 14 14 O 1.21741 * 119.99340 * 183.96321 * 13 4 3 15 15 C 1.46511 * 120.00376 * 3.95289 * 13 4 3 16 16 O 1.35400 * 126.12509 * 354.21123 * 15 13 4 17 17 C 1.34433 * 109.47127 * 179.97438 * 16 15 13 18 18 C 1.33934 * 108.57277 * 359.95906 * 17 16 15 19 19 C 1.35312 * 126.12598 * 174.16050 * 15 13 4 20 20 C 1.50485 * 130.60650 * 0.31089 * 19 15 13 21 21 C 1.53678 * 107.55855 * 164.09877 * 20 19 15 22 22 O 1.42895 * 109.89287 * 48.26669 * 21 20 19 23 23 C 1.43520 * 114.76022 * 287.68335 * 22 21 20 24 24 H 4.40641 * 5.51407 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.47091 * 130.35671 * 3 2 1 26 26 H 1.08994 * 109.47559 * 10.35696 * 3 2 1 27 27 H 0.97004 * 119.99652 * 179.97438 * 8 7 5 28 28 H 1.08001 * 125.71263 * 179.97438 * 17 16 15 29 29 H 1.08997 * 109.74239 * 44.61150 * 20 19 15 30 30 H 1.09003 * 109.86931 * 283.65300 * 20 19 15 31 31 H 1.08997 * 109.38992 * 288.15563 * 21 20 19 32 32 H 1.09006 * 109.38555 * 168.36316 * 21 20 19 33 33 H 1.09001 * 109.82362 * 171.03937 * 23 22 21 34 34 H 1.08999 * 109.82247 * 291.89822 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1340 0.4653 1.3009 5 6 3.4735 1.7796 1.4747 6 1 4.1338 2.0647 2.2803 7 6 2.9684 2.7477 0.6141 8 7 1.7939 2.5772 0.0504 9 14 3.9597 4.2907 0.2593 10 1 4.8351 4.0571 -0.9172 11 1 3.0358 5.4176 -0.0271 12 1 4.7960 4.6242 1.4402 13 6 3.2488 -0.4017 2.3263 14 8 3.5852 -0.0025 3.4261 15 6 2.9685 -1.8245 2.1176 16 8 2.4828 -2.3846 0.9846 17 6 2.3543 -3.7113 1.1600 18 6 2.7544 -4.0183 2.4007 19 6 3.1496 -2.8144 3.0222 20 6 3.6570 -2.7664 4.4381 21 6 3.2791 -4.0953 5.1113 22 8 3.6440 -5.1890 4.2671 23 6 2.8203 -5.3505 3.1030 24 1 -1.0501 -0.0002 -0.0001 25 1 3.0090 0.6663 -0.7831 26 1 3.0098 -1.0100 -0.1847 27 1 1.4414 3.2529 -0.5497 28 1 1.9896 -4.4121 0.4236 29 1 3.1902 -1.9366 4.9687 30 1 4.7403 -2.6455 4.4396 31 1 2.2040 -4.1181 5.2888 32 1 3.8047 -4.1814 6.0624 33 1 3.2586 -6.0972 2.4408 34 1 1.8186 -5.6619 3.3992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367631060.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:07 Heat of formation + Delta-G solvation = -8.699145 kcal Electronic energy + Delta-G solvation = -21392.654420 eV Core-core repulsion = 18066.137239 eV Total energy + Delta-G solvation = -3326.517181 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.72747 -40.28663 -39.47466 -37.25301 -34.54090 -34.13722 -33.13696 -32.91236 -30.31824 -28.37417 -27.08453 -26.96223 -24.57186 -23.48227 -20.89294 -20.58319 -19.77109 -18.90715 -18.18376 -17.43783 -17.37635 -16.98507 -16.64864 -16.17292 -16.06994 -15.82383 -15.58896 -14.88322 -14.46734 -14.28735 -14.24597 -13.92640 -13.66307 -13.55865 -13.01837 -12.83319 -12.54547 -12.45482 -12.18127 -11.85960 -11.26628 -11.19455 -10.93726 -10.69985 -10.57584 -10.34829 -9.97868 -9.50181 -8.47482 -6.01395 0.21497 1.30824 1.40374 1.43134 1.53275 1.87717 1.98298 2.25365 2.34006 2.35383 2.84525 2.95706 3.14355 3.55945 3.75956 3.85000 3.94841 4.03511 4.23845 4.39835 4.43154 4.54477 4.61497 4.68618 4.75387 4.90375 4.92816 5.06950 5.18433 5.32405 5.38358 5.46722 5.83551 6.04230 6.17604 6.34551 6.97078 7.10316 7.21818 7.80277 8.51169 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.028364 B = 0.005706 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.945864 B = 4905.711840 C = 5575.511101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.155 4.155 3 C 0.230 3.770 4 N -0.425 5.425 5 C -0.366 4.366 6 H 0.081 0.919 7 C 0.013 3.987 8 N -0.847 5.847 9 Si 0.987 3.013 10 H -0.260 1.260 11 H -0.275 1.275 12 H -0.273 1.273 13 C 0.497 3.503 14 O -0.607 6.607 15 C -0.061 4.061 16 O -0.171 6.171 17 C 0.003 3.997 18 C -0.244 4.244 19 C -0.128 4.128 20 C -0.084 4.084 21 C 0.074 3.926 22 O -0.394 6.394 23 C 0.138 3.862 24 H 0.234 0.766 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.278 0.722 28 H 0.256 0.744 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 -14.139 -1.095 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.156 4.156 3 C 0.108 3.892 4 N -0.140 5.140 5 C -0.493 4.493 6 H 0.099 0.901 7 C -0.195 4.195 8 N -0.481 5.481 9 Si 0.809 3.191 10 H -0.185 1.185 11 H -0.200 1.200 12 H -0.198 1.198 13 C 0.288 3.712 14 O -0.496 6.496 15 C -0.112 4.112 16 O -0.068 6.068 17 C -0.066 4.066 18 C -0.245 4.245 19 C -0.131 4.131 20 C -0.121 4.121 21 C -0.003 4.003 22 O -0.313 6.313 23 C 0.062 3.938 24 H 0.251 0.749 25 H 0.106 0.894 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.272 0.728 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.267 -13.751 -0.945 13.842 hybrid contribution -0.109 1.485 -0.142 1.496 sum -1.377 -12.266 -1.087 12.391 Atomic orbital electron populations 1.25079 0.96244 1.04367 0.99692 1.23147 0.94681 0.97168 1.00610 1.18400 0.85385 0.99375 0.86020 1.43848 1.53429 1.08232 1.08502 1.19599 1.28939 0.82503 1.18231 0.90090 1.26165 0.95114 1.01892 0.96300 1.70271 1.13335 1.36917 1.27558 0.85057 0.78356 0.76580 0.79087 1.18515 1.19968 1.19769 1.16976 0.86038 0.83628 0.84518 1.90619 1.56213 1.77969 1.24841 1.21499 1.08959 0.93675 0.87098 1.84570 1.65464 1.21912 1.34891 1.24588 1.01218 0.82213 0.98540 1.21271 1.08922 0.97849 0.96503 1.20388 1.02660 0.92100 0.97985 1.20742 1.00925 0.99834 0.90595 1.22687 1.00669 0.83578 0.93353 1.87916 1.57677 1.49508 1.36158 1.21315 0.96418 0.90583 0.85503 0.74918 0.89424 0.87969 0.91175 0.72800 0.90944 0.91017 0.91995 0.86134 0.84994 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.78 19.25 74.32 1.43 -8.35 16 2 C -0.15 -7.16 10.54 31.12 0.33 -6.83 16 3 C 0.23 10.80 4.76 84.57 0.40 11.20 16 4 N -0.43 -23.13 2.58 -650.13 -1.68 -24.81 16 5 C -0.37 -21.03 9.15 84.10 0.77 -20.26 16 6 H 0.08 4.97 7.54 -2.91 -0.02 4.94 16 7 C 0.01 0.67 4.59 84.95 0.39 1.06 16 8 N -0.85 -44.49 10.20 21.68 0.22 -44.27 16 9 Si 0.99 41.14 29.64 68.60 2.03 43.18 16 10 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 C 0.50 27.04 7.52 86.40 0.65 27.69 16 14 O -0.61 -36.46 15.29 -4.48 -0.07 -36.52 16 15 C -0.06 -2.72 6.73 23.75 0.16 -2.56 16 16 O -0.17 -6.37 6.68 -14.95 -0.10 -6.47 16 17 C 0.00 0.07 12.06 66.84 0.81 0.87 16 18 C -0.24 -7.03 6.04 -20.12 -0.12 -7.15 16 19 C -0.13 -4.92 6.02 -19.90 -0.12 -5.04 16 20 C -0.08 -2.96 5.75 30.01 0.17 -2.79 16 21 C 0.07 1.91 6.76 72.21 0.49 2.39 16 22 O -0.39 -10.26 10.70 -148.98 -1.59 -11.86 16 23 C 0.14 2.88 7.27 71.25 0.52 3.40 16 24 H 0.23 7.52 7.80 -4.41 -0.03 7.49 16 25 H 0.09 4.18 6.94 -2.39 -0.02 4.16 16 26 H 0.10 4.28 5.31 -2.39 -0.01 4.27 16 27 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 28 H 0.26 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.07 2.87 7.54 -2.39 -0.02 2.85 16 30 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.06 1.46 8.08 -2.39 -0.02 1.45 16 32 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 33 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -73.75 295.01 5.81 -67.94 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.13 Total: 19.19 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 5.87 Total: -6.37 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -1.46 Total: -69.08 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -1.76 Total: -54.85 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.18 kcal Total: -73.75 5.81 -67.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367631060.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.242 kcal (2) G-P(sol) polarization free energy of solvation -73.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds