Wall clock time and date at job start Mon Mar 30 2020 01:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99896 * 2 1 4 4 H 1.48496 * 109.47185 * 269.99580 * 3 2 1 5 5 H 1.48500 * 109.47205 * 30.00051 * 3 2 1 6 6 H 1.48502 * 109.47147 * 149.99932 * 3 2 1 7 7 C 1.37878 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00163 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00212 * 180.02562 * 7 2 1 10 10 O 1.42891 * 109.47325 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00320 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47240 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47407 * 64.99878 * 12 11 10 14 14 C 1.46467 * 110.99904 * 75.67056 * 13 12 11 15 15 C 1.53249 * 109.79623 * 197.72510 * 14 13 12 16 16 S 1.81898 * 108.50518 * 298.03365 * 15 14 13 17 17 C 1.81906 * 101.91154 * 51.30454 * 16 15 14 18 18 C 1.46336 * 110.87933 * 201.65453 * 13 12 11 19 19 H 1.08996 * 109.43291 * 282.30173 * 18 13 12 20 20 C 1.50708 * 109.36963 * 42.13571 * 18 13 12 21 21 O 1.20816 * 120.00129 * 37.70918 * 20 18 13 22 22 O 1.34230 * 119.99710 * 217.70600 * 20 18 13 23 23 H 0.96996 * 120.00105 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46818 * 59.99877 * 9 7 2 25 25 H 1.09005 * 109.46659 * 300.00252 * 9 7 2 26 26 H 1.08997 * 109.46865 * 59.99415 * 11 10 9 27 27 H 1.09001 * 109.46664 * 300.00169 * 11 10 9 28 28 H 1.08998 * 109.46897 * 304.99860 * 12 11 10 29 29 H 1.09004 * 109.46712 * 184.99946 * 12 11 10 30 30 H 1.09006 * 109.40739 * 77.64656 * 14 13 12 31 31 H 1.08999 * 109.40843 * 317.80718 * 14 13 12 32 32 H 1.08994 * 109.62932 * 57.74000 * 15 14 13 33 33 H 1.08998 * 109.62898 * 178.32985 * 15 14 13 34 34 H 1.09009 * 109.62790 * 68.40040 * 17 16 15 35 35 H 1.09005 * 109.63039 * 188.98462 * 17 16 15 36 36 H 0.96700 * 116.99816 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5412 0.0010 11 6 5.4125 -2.6541 0.0009 12 6 5.8070 -4.1323 0.0002 13 7 5.3677 -4.7557 -1.2553 14 6 6.2425 -4.3726 -2.3658 15 6 5.5413 -4.6524 -3.6994 16 16 5.2214 -6.4390 -3.8197 17 6 4.3924 -6.7794 -2.2367 18 6 5.2519 -6.2067 -1.1045 19 1 6.2445 -6.6554 -1.1408 20 6 4.6081 -6.5216 0.2212 21 8 3.7181 -5.8213 0.6422 22 8 5.0235 -7.5802 0.9344 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 5.8152 -2.1705 0.8909 27 1 5.8152 -2.1704 -0.8890 28 1 5.3312 -4.6357 0.8417 29 1 6.8898 -4.2193 0.0897 30 1 7.1664 -4.9488 -2.3145 31 1 6.4741 -3.3099 -2.2944 32 1 4.5978 -4.1080 -3.7383 33 1 6.1826 -4.3390 -4.5231 34 1 3.4111 -6.3048 -2.2277 35 1 4.2828 -7.8559 -2.1047 36 1 4.5808 -7.7419 1.7787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385288019.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:45 Heat of formation + Delta-G solvation = -113.041608 kcal Electronic energy + Delta-G solvation = -20024.534844 eV Core-core repulsion = 16828.936986 eV Total energy + Delta-G solvation = -3195.597858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76747 -38.26125 -36.50993 -36.03247 -32.72308 -32.19408 -31.46361 -28.40783 -26.85081 -25.30661 -23.04528 -21.90193 -21.64417 -20.27165 -18.33834 -17.44499 -16.84638 -16.28263 -15.92621 -15.75051 -15.49276 -15.14464 -14.58953 -14.24810 -13.96016 -13.75513 -13.65872 -13.18300 -12.78187 -12.55632 -12.36190 -12.22045 -11.82941 -11.70174 -11.54576 -11.18688 -10.85115 -10.72350 -10.62486 -10.30837 -9.87189 -9.80074 -9.08713 -8.76156 -8.50820 -8.37015 -7.84914 -6.04642 -4.02446 1.54626 2.04268 2.29914 2.85431 3.27254 3.33973 3.35504 3.53964 4.40226 4.43989 4.55826 4.67391 4.77267 5.00445 5.03710 5.11558 5.17856 5.26185 5.34558 5.41002 5.49408 5.62952 5.74681 5.83358 5.90212 6.03913 6.42096 6.65003 6.74883 6.82820 7.06479 7.67544 7.85685 8.13232 8.76774 9.10805 9.55251 11.08728 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.005092 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.151083 B = 5497.746047 C = 5953.262663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.511 4.511 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.355 6.355 11 C 0.068 3.932 12 C 0.050 3.950 13 N -0.521 5.521 14 C 0.060 3.940 15 C -0.079 4.079 16 S -0.255 6.255 17 C -0.070 4.070 18 C 0.105 3.895 19 H 0.081 0.919 20 C 0.469 3.531 21 O -0.458 6.458 22 O -0.523 6.523 23 H 0.265 0.735 24 H -0.002 1.002 25 H -0.005 1.005 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.267 -13.604 -3.372 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.273 6.273 11 C -0.010 4.010 12 C -0.077 4.077 13 N -0.248 5.248 14 C -0.069 4.069 15 C -0.228 4.228 16 S -0.028 6.028 17 C -0.219 4.219 18 C -0.006 4.006 19 H 0.099 0.901 20 C 0.306 3.694 21 O -0.340 6.340 22 O -0.336 6.336 23 H 0.075 0.925 24 H 0.016 0.984 25 H 0.012 0.988 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 15.689 -13.902 -4.604 21.461 hybrid contribution 0.683 1.666 1.685 2.465 sum 16.372 -12.236 -2.919 20.646 Atomic orbital electron populations 1.69879 1.06028 1.26887 1.50808 1.24769 0.94776 0.98614 0.94897 0.86867 0.80325 0.83967 0.78647 1.20027 1.20865 1.19241 1.20906 0.88324 0.95284 1.50433 0.89878 1.20576 0.96269 0.80077 0.93874 1.88105 1.16150 1.28312 1.94768 1.22227 0.86376 0.93646 0.98764 1.22414 0.97196 0.96571 0.91535 1.60903 1.52972 1.05234 1.05693 1.22316 0.93098 1.02465 0.89012 1.23606 1.05539 0.93731 0.99922 1.86810 1.77667 1.12129 1.26160 1.23430 1.02034 1.04343 0.92111 1.21303 0.99266 0.90732 0.89307 0.90109 1.23067 0.81973 0.78010 0.86334 1.90942 1.27247 1.46997 1.68863 1.84508 1.64173 1.47820 1.37055 0.92495 0.98400 0.98751 0.94068 0.94515 0.89181 0.93483 0.93194 0.88568 0.87865 0.87142 0.87375 0.86873 0.72927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.04 16 7 C -0.51 -15.77 9.99 -34.44 -0.34 -16.11 16 8 H 0.08 2.85 8.06 -52.49 -0.42 2.42 16 9 C 0.17 4.40 4.76 36.01 0.17 4.57 16 10 O -0.35 -8.61 10.27 -35.23 -0.36 -8.97 16 11 C 0.07 1.21 6.12 37.16 0.23 1.43 16 12 C 0.05 0.72 4.90 -3.83 -0.02 0.70 16 13 N -0.52 -7.35 4.05 -228.54 -0.93 -8.27 16 14 C 0.06 0.67 5.24 -3.93 -0.02 0.65 16 15 C -0.08 -0.88 6.69 37.29 0.25 -0.63 16 16 S -0.26 -2.95 22.40 -107.50 -2.41 -5.36 16 17 C -0.07 -0.83 5.95 37.28 0.22 -0.61 16 18 C 0.11 1.29 2.37 -69.04 -0.16 1.12 16 19 H 0.08 0.84 7.91 -51.93 -0.41 0.43 16 20 C 0.47 6.26 5.78 36.01 0.21 6.47 16 21 O -0.46 -8.36 15.93 -18.74 -0.30 -8.66 16 22 O -0.52 -5.06 13.42 -39.26 -0.53 -5.58 16 23 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 24 H 0.00 -0.04 7.20 -51.93 -0.37 -0.42 16 25 H -0.01 -0.13 7.57 -51.93 -0.39 -0.52 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.59 6.64 -51.93 -0.34 0.25 16 28 H 0.09 1.46 4.91 -51.93 -0.25 1.20 16 29 H 0.05 0.53 8.00 -51.93 -0.42 0.12 16 30 H 0.05 0.47 7.92 -51.93 -0.41 0.06 16 31 H 0.10 1.05 6.44 -51.93 -0.33 0.72 16 32 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.11 1.52 8.14 -51.92 -0.42 1.10 16 35 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.41 2.41 9.10 45.56 0.41 2.83 16 LS Contribution 308.28 15.07 4.65 4.65 Total: -1.00 -36.23 308.28 -7.56 -43.80 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.23 Total: -0.80 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 0.43 Total: -0.37 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.15 Total: -35.90 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -1.19 Total: -23.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.41 Total: -5.36 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.23 -7.56 -43.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385288019.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.245 kcal (2) G-P(sol) polarization free energy of solvation -36.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds