Wall clock time and date at job start Mon Mar 30 2020 01:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99896 * 2 1 4 4 H 1.48496 * 109.47185 * 269.99580 * 3 2 1 5 5 H 1.48500 * 109.47205 * 30.00051 * 3 2 1 6 6 H 1.48502 * 109.47147 * 149.99932 * 3 2 1 7 7 C 1.37878 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00163 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00212 * 180.02562 * 7 2 1 10 10 O 1.42891 * 109.47325 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00320 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47240 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47407 * 64.99878 * 12 11 10 14 14 C 1.46467 * 110.99904 * 75.67056 * 13 12 11 15 15 C 1.53249 * 109.79623 * 197.72510 * 14 13 12 16 16 S 1.81898 * 108.50518 * 298.03365 * 15 14 13 17 17 C 1.81906 * 101.91154 * 51.30454 * 16 15 14 18 18 C 1.46336 * 110.87933 * 201.65453 * 13 12 11 19 19 H 1.08996 * 109.43291 * 282.30173 * 18 13 12 20 20 C 1.50708 * 109.36963 * 42.13571 * 18 13 12 21 21 O 1.20816 * 120.00129 * 37.70918 * 20 18 13 22 22 O 1.34230 * 119.99710 * 217.70600 * 20 18 13 23 23 H 0.96996 * 120.00105 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46818 * 59.99877 * 9 7 2 25 25 H 1.09005 * 109.46659 * 300.00252 * 9 7 2 26 26 H 1.08997 * 109.46865 * 59.99415 * 11 10 9 27 27 H 1.09001 * 109.46664 * 300.00169 * 11 10 9 28 28 H 1.08998 * 109.46897 * 304.99860 * 12 11 10 29 29 H 1.09004 * 109.46712 * 184.99946 * 12 11 10 30 30 H 1.09006 * 109.40739 * 77.64656 * 14 13 12 31 31 H 1.08999 * 109.40843 * 317.80718 * 14 13 12 32 32 H 1.08994 * 109.62932 * 57.74000 * 15 14 13 33 33 H 1.08998 * 109.62898 * 178.32985 * 15 14 13 34 34 H 1.09009 * 109.62790 * 68.40040 * 17 16 15 35 35 H 1.09005 * 109.63039 * 188.98462 * 17 16 15 36 36 H 0.96700 * 116.99816 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5412 0.0010 11 6 5.4125 -2.6541 0.0009 12 6 5.8070 -4.1323 0.0002 13 7 5.3677 -4.7557 -1.2553 14 6 6.2425 -4.3726 -2.3658 15 6 5.5413 -4.6524 -3.6994 16 16 5.2214 -6.4390 -3.8197 17 6 4.3924 -6.7794 -2.2367 18 6 5.2519 -6.2067 -1.1045 19 1 6.2445 -6.6554 -1.1408 20 6 4.6081 -6.5216 0.2212 21 8 3.7181 -5.8213 0.6422 22 8 5.0235 -7.5802 0.9344 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 5.8152 -2.1705 0.8909 27 1 5.8152 -2.1704 -0.8890 28 1 5.3312 -4.6357 0.8417 29 1 6.8898 -4.2193 0.0897 30 1 7.1664 -4.9488 -2.3145 31 1 6.4741 -3.3099 -2.2944 32 1 4.5978 -4.1080 -3.7383 33 1 6.1826 -4.3390 -4.5231 34 1 3.4111 -6.3048 -2.2277 35 1 4.2828 -7.8559 -2.1047 36 1 4.5808 -7.7419 1.7787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385288019.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:45 Heat of formation + Delta-G solvation = -141.930824 kcal Electronic energy + Delta-G solvation = -20025.787574 eV Core-core repulsion = 16828.936986 eV Total energy + Delta-G solvation = -3196.850589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.81222 -39.37280 -38.11662 -37.07428 -34.89938 -33.28508 -32.58626 -30.24632 -28.34423 -26.28587 -24.03529 -23.95674 -22.90886 -21.25686 -19.32882 -19.05114 -18.44845 -17.57076 -17.13853 -17.01884 -16.74003 -16.32950 -16.03448 -15.95990 -15.07519 -14.81162 -14.72107 -14.66051 -14.24603 -14.04056 -13.59563 -13.46717 -13.05400 -12.88570 -12.75151 -12.58035 -12.51406 -12.33347 -12.00930 -11.81317 -11.46987 -11.25765 -10.91626 -10.81543 -10.25560 -9.44893 -8.76965 -8.36680 -6.44339 0.62584 1.04819 1.31085 1.35638 1.36970 1.46464 1.95900 2.29271 2.56816 2.95405 3.12295 3.51372 3.74888 3.83204 4.06919 4.15639 4.20669 4.24208 4.26438 4.41310 4.43737 4.49975 4.59171 4.65413 4.72169 4.83250 4.93726 5.02057 5.45573 5.55581 5.74894 5.88571 6.00583 6.60411 6.84974 6.94985 7.20658 8.81289 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.005092 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.151083 B = 5497.746047 C = 5953.262663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.542 4.542 8 H 0.020 0.980 9 C 0.181 3.819 10 O -0.388 6.388 11 C 0.056 3.944 12 C 0.056 3.944 13 N -0.554 5.554 14 C 0.061 3.939 15 C -0.079 4.079 16 S -0.250 6.250 17 C -0.070 4.070 18 C 0.108 3.892 19 H 0.111 0.889 20 C 0.480 3.520 21 O -0.519 6.519 22 O -0.506 6.506 23 H 0.272 0.728 24 H 0.007 0.993 25 H 0.010 0.990 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.749 -12.954 -3.811 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.580 4.580 8 H 0.039 0.961 9 C 0.105 3.895 10 O -0.307 6.307 11 C -0.021 4.021 12 C -0.070 4.070 13 N -0.282 5.282 14 C -0.067 4.067 15 C -0.227 4.227 16 S -0.023 6.023 17 C -0.219 4.219 18 C -0.003 4.003 19 H 0.128 0.872 20 C 0.319 3.681 21 O -0.406 6.406 22 O -0.320 6.320 23 H 0.081 0.919 24 H 0.025 0.975 25 H 0.027 0.973 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 19.203 -13.310 -5.038 23.902 hybrid contribution -0.447 1.288 1.822 2.276 sum 18.757 -12.022 -3.216 22.509 Atomic orbital electron populations 1.70053 1.08399 1.28725 1.51345 1.25913 0.95843 1.03559 0.93466 0.85539 0.79345 0.77120 0.79854 1.18174 1.19802 1.16849 1.21161 0.91268 0.93475 1.52048 0.96128 1.20251 0.93079 0.81614 0.94590 1.88068 1.20606 1.27021 1.95036 1.22643 0.82733 0.96461 1.00245 1.22320 0.99260 0.94213 0.91243 1.60767 1.54757 1.06398 1.06239 1.22389 0.93480 1.03126 0.87677 1.23648 1.04736 0.93055 1.01289 1.86766 1.77199 1.12414 1.25895 1.23395 1.00452 1.05346 0.92691 1.21370 1.00334 0.90091 0.88465 0.87190 1.23337 0.80677 0.77508 0.86543 1.90937 1.30032 1.49231 1.70385 1.84466 1.63642 1.46029 1.37884 0.91859 0.97510 0.97285 0.92728 0.92598 0.91213 0.89233 0.90451 0.88180 0.90786 0.84466 0.90713 0.84776 0.70912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.78 13.96 21.45 0.30 -61.48 16 2 C 0.01 0.58 5.47 84.66 0.46 1.05 16 3 Si 0.96 44.61 27.47 68.60 1.88 46.50 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16 7 C -0.54 -34.85 9.99 25.60 0.26 -34.60 16 8 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 9 C 0.18 9.48 4.76 71.24 0.34 9.82 16 10 O -0.39 -19.15 10.27 -148.98 -1.53 -20.68 16 11 C 0.06 1.91 6.12 71.98 0.44 2.35 16 12 C 0.06 1.55 4.90 86.30 0.42 1.97 16 13 N -0.55 -14.93 4.05 -876.95 -3.55 -18.48 16 14 C 0.06 1.21 5.24 86.47 0.45 1.67 16 15 C -0.08 -1.63 6.69 72.07 0.48 -1.15 16 16 S -0.25 -5.43 22.40 -56.49 -1.27 -6.69 16 17 C -0.07 -1.62 5.95 72.06 0.43 -1.19 16 18 C 0.11 2.50 2.37 44.36 0.11 2.61 16 19 H 0.11 1.91 7.91 -2.39 -0.02 1.89 16 20 C 0.48 12.65 5.78 71.24 0.41 13.06 16 21 O -0.52 -19.81 15.93 21.99 0.35 -19.46 16 22 O -0.51 -8.99 13.42 -51.42 -0.69 -9.68 16 23 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 24 H 0.01 0.36 7.20 -2.39 -0.02 0.35 16 25 H 0.01 0.46 7.57 -2.38 -0.02 0.45 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.67 6.64 -2.39 -0.02 1.65 16 28 H 0.07 2.22 4.91 -2.39 -0.01 2.21 16 29 H 0.09 1.68 8.00 -2.38 -0.02 1.66 16 30 H 0.08 1.13 7.92 -2.38 -0.02 1.11 16 31 H 0.10 1.90 6.44 -2.39 -0.02 1.88 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.13 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.43 4.50 9.10 -74.06 -0.67 3.83 16 Total: -1.00 -83.54 308.28 -0.34 -83.88 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.36 Total: 10.52 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 3.80 Total: -4.42 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -3.25 Total: -79.96 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -1.87 Total: -49.82 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.50 kcal Atomic # 16 Polarization: -5.43 SS G_CDS: -1.27 Total: -6.69 kcal Total: -83.54 -0.34 -83.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385288019.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.050 kcal (2) G-P(sol) polarization free energy of solvation -83.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds