Wall clock time and date at job start Mon Mar 30 2020 01:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99811 * 2 1 4 4 H 1.48501 * 109.46860 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47367 * 299.99940 * 3 2 1 6 6 H 1.48499 * 109.47299 * 60.00138 * 3 2 1 7 7 C 1.38809 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99952 * 167.62202 * 7 2 1 9 9 N 1.36933 * 120.00222 * 347.62295 * 7 2 1 10 10 C 1.46499 * 120.00065 * 308.06445 * 9 7 2 11 11 C 1.52999 * 117.49728 * 1.55349 * 10 9 7 12 12 C 1.52995 * 117.49955 * 292.89315 * 10 9 7 13 13 S 1.65600 * 120.00109 * 128.06130 * 9 7 2 14 14 O 1.42100 * 104.27636 * 333.93405 * 13 9 7 15 15 O 1.42099 * 104.28020 * 206.07067 * 13 9 7 16 16 C 1.81399 * 104.44833 * 89.99972 * 13 9 7 17 17 C 1.53000 * 109.47106 * 180.02562 * 16 13 9 18 18 H 1.09005 * 110.27297 * 304.36323 * 17 16 13 19 19 C 1.54949 * 110.30971 * 182.17017 * 17 16 13 20 20 C 1.55452 * 100.98944 * 204.68726 * 19 17 16 21 21 C 1.54380 * 102.18293 * 34.03924 * 20 19 17 22 22 O 1.43239 * 107.66722 * 338.73864 * 21 20 19 23 23 H 0.97002 * 120.00033 * 355.33893 * 1 2 3 24 24 H 1.09003 * 115.54979 * 147.22478 * 10 9 7 25 25 H 1.08997 * 117.49948 * 359.97438 * 11 10 9 26 26 H 1.09004 * 117.50107 * 145.02322 * 11 10 9 27 27 H 1.09006 * 117.50298 * 214.97824 * 12 10 9 28 28 H 1.09005 * 117.49868 * 359.97438 * 12 10 9 29 29 H 1.09005 * 109.46931 * 60.00394 * 16 13 9 30 30 H 1.09001 * 109.47505 * 299.99951 * 16 13 9 31 31 H 1.09003 * 111.12598 * 322.55745 * 19 17 16 32 32 H 1.09006 * 111.12742 * 86.67852 * 19 17 16 33 33 H 1.08999 * 110.83850 * 275.89155 * 20 19 17 34 34 H 1.09006 * 110.92370 * 152.22406 * 20 19 17 35 35 H 1.08999 * 109.83326 * 219.17860 * 21 20 19 36 36 H 1.09001 * 109.83096 * 98.29695 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0714 -1.2129 -0.2010 9 7 1.3494 -2.3743 0.2531 10 6 0.5118 -2.4992 1.4485 11 6 0.3870 -1.2729 2.3549 12 6 1.2134 -2.4791 2.8080 13 16 1.4971 -3.6509 -0.7914 14 8 1.8042 -3.0476 -2.0408 15 8 0.2982 -4.3921 -0.6107 16 6 2.9223 -4.5836 -0.1676 17 6 3.1642 -5.8027 -1.0600 18 1 2.2614 -6.4103 -1.1222 19 6 4.3447 -6.6440 -0.5128 20 6 4.8197 -7.3643 -1.8059 21 6 4.5524 -6.2979 -2.8898 22 8 3.5764 -5.3866 -2.3716 23 1 -0.4850 0.8373 0.0683 24 1 -0.3645 -3.1390 1.3439 25 1 0.9284 -0.3734 2.0620 26 1 -0.5713 -1.1060 2.8469 27 1 0.7985 -3.1053 3.5979 28 1 2.2983 -2.3734 2.8129 29 1 2.7227 -4.9132 0.8520 30 1 3.8063 -3.9459 -0.1769 31 1 5.1298 -6.0041 -0.1100 32 1 4.0033 -7.3606 0.2344 33 1 4.2280 -8.2611 -1.9899 34 1 5.8817 -7.6035 -1.7506 35 1 4.1702 -6.7753 -3.7920 36 1 5.4743 -5.7625 -3.1170 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407975202.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:29 Heat of formation + Delta-G solvation = -101.563530 kcal Electronic energy + Delta-G solvation = -20562.383394 eV Core-core repulsion = 17367.283262 eV Total energy + Delta-G solvation = -3195.100131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.46926 -38.83467 -37.71253 -36.50958 -34.54100 -33.46971 -32.72114 -32.69091 -27.38512 -26.64936 -22.94868 -22.72169 -22.57332 -22.20403 -20.20752 -18.72578 -18.38332 -18.02555 -17.24022 -16.82073 -16.69094 -16.26800 -15.79584 -15.40699 -15.20857 -14.53114 -14.07889 -13.93675 -13.57213 -13.51770 -13.14810 -12.90553 -12.80823 -12.74429 -12.68759 -12.64868 -12.45719 -12.19026 -11.99083 -11.95632 -11.75905 -11.59527 -11.18785 -10.79853 -10.62756 -10.37596 -9.23411 -8.13879 -6.06589 -0.33234 1.44590 1.48399 1.58841 2.20070 2.52963 2.68647 3.02036 3.19255 3.41269 3.52521 3.59954 3.73426 3.88496 4.08084 4.12346 4.35661 4.39367 4.40479 4.54873 4.58431 4.62917 4.81341 4.85881 4.90444 4.93014 5.01316 5.04538 5.23047 5.38229 5.53237 5.73499 5.94686 5.95735 6.53928 7.11790 7.53284 8.88083 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.024762 B = 0.006504 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.487089 B = 4304.139989 C = 4708.386275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.256 1.256 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.084 0.916 9 N -0.831 5.831 10 C 0.080 3.920 11 C -0.148 4.148 12 C -0.185 4.185 13 S 2.557 3.443 14 O -1.001 7.001 15 O -1.028 7.028 16 C -0.602 4.602 17 C 0.072 3.928 18 H 0.079 0.921 19 C -0.134 4.134 20 C -0.147 4.147 21 C 0.032 3.968 22 O -0.414 6.414 23 H 0.266 0.734 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.169 0.831 30 H 0.143 0.857 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.413 -11.910 4.626 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.179 1.179 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.447 4.447 8 H 0.102 0.898 9 N -0.659 5.659 10 C -0.029 4.029 11 C -0.187 4.187 12 C -0.225 4.225 13 S 2.663 3.337 14 O -0.991 6.991 15 O -1.018 7.018 16 C -0.733 4.733 17 C 0.013 3.987 18 H 0.097 0.903 19 C -0.173 4.173 20 C -0.184 4.184 21 C -0.044 4.044 22 O -0.334 6.334 23 H 0.076 0.924 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.131 0.869 28 H 0.115 0.885 29 H 0.187 0.813 30 H 0.161 0.839 31 H 0.110 0.890 32 H 0.130 0.870 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.603 -11.896 3.618 15.710 hybrid contribution 0.264 0.960 0.014 0.996 sum 9.867 -10.935 3.632 15.170 Atomic orbital electron populations 1.70253 1.07419 1.28115 1.45864 1.26331 0.95848 1.02734 0.94717 0.85338 0.79573 0.78528 0.77767 1.17904 1.21592 1.19165 1.19174 0.92068 0.84193 1.49298 0.89820 1.52116 1.58086 1.23839 1.31835 1.21148 0.95803 1.03381 0.82534 1.22903 1.00495 0.93723 1.01556 1.23514 0.99660 1.02126 0.97194 1.07083 0.76584 0.75013 0.75029 1.93407 1.86374 1.75252 1.44045 1.93361 1.45562 1.75766 1.87127 1.30485 1.21106 1.10481 1.11223 1.22858 1.00444 0.92862 0.82493 0.90271 1.23333 0.96024 0.98950 0.98979 1.23200 1.04525 0.98112 0.92578 1.23471 0.91969 0.91071 0.97909 1.88591 1.60798 1.52522 1.31526 0.92439 0.88618 0.89142 0.90119 0.86946 0.88494 0.81331 0.83851 0.89024 0.86952 0.89060 0.87102 0.90577 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.63 11.38 21.65 0.25 -49.38 16 2 C 0.01 0.53 3.20 84.86 0.27 0.81 16 3 Si 0.96 41.69 29.52 68.60 2.02 43.71 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.31 -16.48 8.14 84.03 0.68 -15.80 16 8 H 0.08 4.25 7.86 -2.91 -0.02 4.23 16 9 N -0.83 -41.56 2.95 -322.95 -0.95 -42.52 16 10 C 0.08 3.63 5.73 44.99 0.26 3.88 16 11 C -0.15 -6.33 8.27 30.62 0.25 -6.08 16 12 C -0.19 -6.51 10.38 30.62 0.32 -6.19 16 13 S 2.56 123.02 5.27 -56.49 -0.30 122.72 16 14 O -1.00 -57.57 16.86 -126.61 -2.14 -59.70 16 15 O -1.03 -53.49 16.82 -127.65 -2.15 -55.64 16 16 C -0.60 -19.73 5.91 71.98 0.43 -19.30 16 17 C 0.07 2.15 3.43 31.26 0.11 2.26 16 18 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 19 C -0.13 -2.51 6.57 32.10 0.21 -2.30 16 20 C -0.15 -2.32 7.03 31.91 0.22 -2.10 16 21 C 0.03 0.74 7.79 72.45 0.56 1.31 16 22 O -0.41 -14.57 10.54 -148.97 -1.57 -16.14 16 23 H 0.27 14.13 8.32 -92.71 -0.77 13.36 16 24 H 0.10 4.51 7.41 -2.39 -0.02 4.49 16 25 H 0.09 4.28 5.15 -2.39 -0.01 4.27 16 26 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 27 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 28 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 29 H 0.17 4.31 8.14 -2.39 -0.02 4.29 16 30 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 31 H 0.09 1.59 8.06 -2.39 -0.02 1.57 16 32 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -76.39 307.47 -0.45 -76.84 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 1.06 Total: 23.61 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 3.32 Total: -43.51 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -0.71 Total: -91.90 kcal Atomic # 8 Polarization: -125.62 SS G_CDS: -5.85 Total: -131.47 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.02 Total: 43.71 kcal Atomic # 16 Polarization: 123.02 SS G_CDS: -0.30 Total: 122.72 kcal Total: -76.39 -0.45 -76.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407975202.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.722 kcal (2) G-P(sol) polarization free energy of solvation -76.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds