Wall clock time and date at job start Mon Mar 30 2020 02:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47087 * 2 1 4 4 N 1.46496 * 109.46921 * 180.02562 * 3 2 1 5 5 C 1.34777 * 119.99875 * 90.00602 * 4 3 2 6 6 O 1.21693 * 120.00018 * 179.97438 * 5 4 3 7 7 C 1.46377 * 120.00307 * 0.26766 * 5 4 3 8 8 H 1.08001 * 119.99387 * 359.73219 * 7 5 4 9 9 C 1.40043 * 120.00458 * 179.72666 * 7 5 4 10 10 N 1.30674 * 120.00000 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 120.00093 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47059 * 60.00240 * 11 9 7 13 13 H 1.48504 * 109.47424 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47241 * 300.00117 * 11 9 7 15 15 C 1.46504 * 120.00271 * 269.99859 * 4 3 2 16 16 H 1.09005 * 109.63843 * 0.70697 * 15 4 3 17 17 C 1.53877 * 109.64116 * 121.13092 * 15 4 3 18 18 C 1.54986 * 106.65485 * 167.15374 * 17 15 4 19 19 S 1.83286 * 102.47969 * 317.38445 * 18 17 15 20 20 O 1.42101 * 109.35627 * 269.90031 * 19 18 17 21 21 O 1.42101 * 109.47618 * 136.73002 * 19 18 17 22 22 C 1.54162 * 109.64871 * 240.27490 * 15 4 3 23 23 H 1.08998 * 109.46686 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46718 * 299.99621 * 1 2 3 25 25 H 1.08996 * 109.47172 * 60.00109 * 1 2 3 26 26 H 1.09010 * 109.46961 * 240.00183 * 2 1 3 27 27 H 1.09001 * 109.47084 * 120.00376 * 2 1 3 28 28 H 1.08997 * 109.46785 * 60.00119 * 3 2 1 29 29 H 1.09004 * 109.47223 * 300.00602 * 3 2 1 30 30 H 0.96998 * 119.99723 * 180.02562 * 10 9 7 31 31 H 1.08999 * 110.02997 * 286.32117 * 17 15 4 32 32 H 1.08997 * 110.02726 * 47.75216 * 17 15 4 33 33 H 1.09000 * 110.75372 * 199.17972 * 18 17 15 34 34 H 1.08998 * 110.90243 * 75.65565 * 18 17 15 35 35 H 1.09006 * 110.32015 * 331.14502 * 22 15 4 36 36 H 1.09002 * 110.31922 * 93.33112 * 22 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1784 1.4427 -1.1681 6 8 5.3953 1.4432 -1.1687 7 6 3.4460 1.4490 -2.4355 8 1 2.3660 1.4490 -2.4350 9 6 4.1457 1.4551 -3.6486 10 7 5.4524 1.4546 -3.6492 11 14 3.2110 1.4638 -5.2659 12 1 2.3576 2.6771 -5.3379 13 1 4.1754 1.4700 -6.3951 14 1 2.3568 0.2520 -5.3505 15 6 4.2381 1.4423 1.2678 16 1 3.5327 1.4295 2.0987 17 6 5.1456 0.2017 1.3405 18 6 6.1167 0.4306 2.5265 19 16 6.5901 2.1889 2.3171 20 8 7.7443 2.2708 1.4922 21 8 6.5765 2.8371 3.5816 22 6 5.1208 2.7030 1.3565 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9562 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 5.9370 1.4592 -4.4895 31 1 4.5451 -0.6902 1.5194 32 1 5.7066 0.0947 0.4122 33 1 6.9889 -0.2176 2.4422 34 1 5.6099 0.2773 3.4793 35 1 5.4158 3.0296 0.3592 36 1 4.5897 3.5012 1.8752 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408228114.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:04 Heat of formation + Delta-G solvation = -108.516661 kcal Electronic energy + Delta-G solvation = -20546.252543 eV Core-core repulsion = 17350.850901 eV Total energy + Delta-G solvation = -3195.401642 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.77539 -36.61730 -35.64409 -35.14554 -34.61877 -32.56299 -31.46646 -29.19995 -26.47900 -25.45085 -24.19350 -21.78878 -20.96070 -19.01933 -18.45393 -16.89721 -16.23553 -16.15578 -15.65938 -15.17535 -14.85837 -14.49458 -13.92012 -13.79036 -13.57930 -13.23220 -12.77175 -12.69510 -12.21455 -11.85590 -11.75839 -11.61386 -11.58199 -11.44104 -11.32167 -11.25906 -11.02066 -10.88085 -10.74710 -10.41639 -10.36667 -10.28051 -10.07826 -9.80714 -8.92397 -7.64348 -7.46726 -6.28045 -4.75036 0.45636 2.90909 3.08880 3.15336 3.16285 3.92477 4.00019 4.22690 4.42039 4.48099 4.85060 5.07099 5.08612 5.17595 5.32952 5.38953 5.40992 5.66154 5.72180 5.74203 5.82953 5.93110 6.03957 6.13134 6.23752 6.29741 6.48356 6.58761 6.65945 6.77368 7.36109 7.43938 7.98823 8.19655 8.92613 9.24728 10.43981 10.63167 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.007057 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.576085 B = 3966.790159 C = 5093.268205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.143 4.143 3 C 0.127 3.873 4 N -0.634 5.634 5 C 0.555 3.445 6 O -0.568 6.568 7 C -0.541 4.541 8 H 0.073 0.927 9 C 0.088 3.912 10 N -0.760 5.760 11 Si 0.905 3.095 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.268 1.268 15 C 0.174 3.826 16 H 0.084 0.916 17 C -0.139 4.139 18 C -0.584 4.584 19 S 2.386 3.614 20 O -0.930 6.930 21 O -0.960 6.960 22 C -0.597 4.597 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.271 0.729 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.160 0.840 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.699 -2.310 8.646 11.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.003 3.997 4 N -0.370 5.370 5 C 0.362 3.638 6 O -0.451 6.451 7 C -0.577 4.577 8 H 0.091 0.909 9 C -0.133 4.133 10 N -0.389 5.389 11 Si 0.729 3.271 12 H -0.193 1.193 13 H -0.205 1.205 14 H -0.193 1.193 15 C 0.067 3.933 16 H 0.102 0.898 17 C -0.178 4.178 18 C -0.714 4.714 19 S 2.570 3.430 20 O -0.928 6.928 21 O -0.957 6.957 22 C -0.729 4.729 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.178 0.822 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.030 -1.776 8.838 10.323 hybrid contribution -1.309 -0.487 -1.023 1.732 sum -6.339 -2.263 7.815 10.314 Atomic orbital electron populations 1.21699 0.96383 1.01050 1.01378 1.21997 0.94827 0.98929 1.02447 1.21326 0.81359 0.95427 1.01619 1.48148 1.04819 1.79850 1.04207 1.18260 0.87086 0.76462 0.82012 1.90595 1.13661 1.54800 1.86033 1.20955 0.93693 1.53993 0.89060 0.90934 1.25723 0.94622 0.92696 1.00271 1.69989 1.06963 1.34283 1.27625 0.86480 0.79902 0.79452 0.81245 1.19301 1.20538 1.19277 1.20869 0.93217 0.89559 0.89694 0.89761 1.22773 0.97614 0.99411 0.98019 1.30488 1.10021 1.24260 1.06667 1.09008 0.78550 0.79553 0.75920 1.93627 1.45264 1.85327 1.68535 1.93549 1.87781 1.73321 1.41026 1.30879 1.17687 1.07300 1.17002 0.93270 0.93331 0.92655 0.90804 0.92935 0.93101 0.89845 0.91856 0.89598 0.86287 0.84999 0.85391 0.82246 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.14 -2.09 6.26 -26.73 -0.17 -2.26 16 3 C 0.13 2.07 5.09 -4.04 -0.02 2.05 16 4 N -0.63 -12.47 2.45 -166.54 -0.41 -12.88 16 5 C 0.55 13.98 6.77 -12.99 -0.09 13.89 16 6 O -0.57 -16.11 11.43 5.20 0.06 -16.05 16 7 C -0.54 -13.88 8.74 -35.63 -0.31 -14.19 16 8 H 0.07 1.70 5.99 -52.49 -0.31 1.39 16 9 C 0.09 2.29 5.50 -17.37 -0.10 2.19 16 10 N -0.76 -21.53 11.83 55.55 0.66 -20.87 16 11 Si 0.90 19.14 29.56 -169.99 -5.02 14.12 16 12 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 14 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 15 C 0.17 2.88 2.98 -66.86 -0.20 2.68 16 16 H 0.08 1.09 7.81 -51.93 -0.41 0.68 16 17 C -0.14 -2.24 5.78 -25.23 -0.15 -2.39 16 18 C -0.58 -7.70 7.31 38.21 0.28 -7.42 16 19 S 2.39 38.95 6.10 -107.50 -0.66 38.29 16 20 O -0.93 -19.61 18.15 -57.73 -1.05 -20.66 16 21 O -0.96 -16.90 18.15 -57.73 -1.05 -17.95 16 22 C -0.60 -10.05 6.54 37.76 0.25 -9.80 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.69 7.93 -51.93 -0.41 0.28 16 29 H 0.08 1.46 6.08 -51.93 -0.32 1.14 16 30 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.12 2.44 5.92 -51.93 -0.31 2.13 16 33 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.16 3.33 6.16 -51.93 -0.32 3.01 16 36 H 0.13 1.73 8.14 -51.93 -0.42 1.30 16 LS Contribution 305.32 15.07 4.60 4.60 Total: -1.00 -34.71 305.32 -8.01 -42.72 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.01 Total: 5.30 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -0.13 Total: -16.62 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.25 Total: -33.75 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -2.04 Total: -54.66 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: 38.95 SS G_CDS: -0.66 Total: 38.29 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.71 -8.01 -42.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408228114.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.799 kcal (2) G-P(sol) polarization free energy of solvation -34.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds