Wall clock time and date at job start Mon Mar 30 2020 01:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99945 * 2 1 4 4 H 1.48500 * 109.47055 * 239.99908 * 3 2 1 5 5 H 1.48504 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47262 * 120.00022 * 3 2 1 7 7 C 1.37871 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00097 * 359.97438 * 7 2 1 10 10 S 1.81397 * 109.47231 * 179.97438 * 9 7 2 11 11 O 1.42102 * 110.54136 * 68.37384 * 10 9 7 12 12 O 1.42096 * 110.54063 * 291.62506 * 10 9 7 13 13 N 1.65592 * 104.44875 * 179.97438 * 10 9 7 14 14 C 1.47158 * 120.98256 * 90.00188 * 13 10 9 15 15 C 1.53296 * 108.38515 * 129.44362 * 14 13 10 16 16 O 1.42965 * 109.22371 * 52.30093 * 15 14 13 17 17 C 1.42961 * 114.16470 * 297.41773 * 16 15 14 18 18 H 1.08993 * 109.51640 * 302.60790 * 17 16 15 19 19 C 1.53008 * 109.50998 * 182.50282 * 17 16 15 20 20 C 1.53000 * 117.49506 * 60.00273 * 19 17 16 21 21 C 1.53002 * 60.02940 * 107.50086 * 20 19 17 22 22 C 1.47156 * 120.98202 * 269.97834 * 13 10 9 23 23 H 0.96998 * 119.99941 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46762 * 59.99831 * 9 7 2 25 25 H 1.09005 * 109.46748 * 300.00119 * 9 7 2 26 26 H 1.08996 * 109.68085 * 9.71861 * 14 13 10 27 27 H 1.09001 * 109.70834 * 249.17988 * 14 13 10 28 28 H 1.08996 * 109.51114 * 292.37819 * 15 14 13 29 29 H 1.09000 * 109.55153 * 172.25241 * 15 14 13 30 30 H 1.08999 * 115.55053 * 274.33616 * 19 17 16 31 31 H 1.09002 * 117.49833 * 215.00191 * 20 19 17 32 32 H 1.09002 * 117.49953 * 0.02562 * 20 19 17 33 33 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 34 34 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 35 35 H 1.08994 * 109.68140 * 110.83799 * 22 13 10 36 36 H 1.09000 * 109.68350 * 350.27807 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8779 -0.0021 11 8 3.1275 -3.9388 1.2344 12 8 3.1256 -3.9377 -1.2396 13 7 1.4795 -5.2340 -0.0012 14 6 1.0434 -5.8542 -1.2624 15 6 1.3659 -7.3516 -1.2018 16 8 0.8193 -7.9026 -0.0011 17 6 1.3690 -7.3523 1.1984 18 1 2.4497 -7.4932 1.2018 19 6 0.7578 -8.0574 2.4110 20 6 0.9654 -9.5687 2.5281 21 6 1.7193 -8.6191 3.4612 22 6 1.0465 -5.8548 1.2608 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 1.5736 -5.3981 -2.0984 27 1 -0.0303 -5.7148 -1.3886 28 1 2.4468 -7.4917 -1.2075 29 1 0.9290 -7.8541 -2.0647 30 1 -0.1905 -7.6510 2.7627 31 1 0.1538 -10.1565 2.9569 32 1 1.5378 -10.0606 1.7416 33 1 1.4037 -8.5822 4.5039 34 1 2.7872 -8.4860 3.2881 35 1 -0.0268 -5.7155 1.3891 36 1 1.5789 -5.3992 2.0957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408457780.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:20 Heat of formation + Delta-G solvation = -93.181045 kcal Electronic energy + Delta-G solvation = -20068.079993 eV Core-core repulsion = 16873.343354 eV Total energy + Delta-G solvation = -3194.736640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.49381 -36.84883 -36.26192 -35.10306 -34.46101 -33.37584 -31.07535 -29.05081 -27.05556 -24.42044 -23.52076 -22.40438 -21.69138 -20.56312 -18.31528 -17.41651 -16.55990 -16.40103 -16.12540 -15.60141 -15.29447 -14.98596 -14.50293 -14.32324 -14.22251 -13.78071 -13.26944 -12.52500 -12.28610 -12.13915 -11.72748 -11.64033 -11.57143 -11.46659 -11.26526 -11.18791 -10.93644 -10.91063 -10.75613 -10.64657 -10.50570 -10.13303 -9.96027 -9.87919 -9.36523 -8.73716 -8.40655 -6.35963 -4.47499 1.20645 3.21585 3.23685 3.27805 3.31119 3.43421 4.03968 4.21353 4.51499 4.74220 4.76442 4.90539 4.93599 4.95741 5.05396 5.07082 5.21291 5.24521 5.47207 5.53315 5.54988 5.59539 5.65177 5.78781 5.90176 6.00586 6.02523 6.13867 6.28175 6.55051 6.75395 6.90842 7.20621 7.40106 7.71811 8.54516 9.20572 10.75619 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.031293 B = 0.004854 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.542679 B = 5767.047215 C = 6025.116406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.069 0.931 9 C -0.415 4.415 10 S 2.580 3.420 11 O -0.977 6.977 12 O -0.977 6.977 13 N -1.013 6.013 14 C 0.084 3.916 15 C 0.053 3.947 16 O -0.375 6.375 17 C 0.112 3.888 18 H 0.062 0.938 19 C -0.149 4.149 20 C -0.165 4.165 21 C -0.173 4.173 22 C 0.095 3.905 23 H 0.269 0.731 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 -15.264 2.127 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.551 4.551 10 S 2.682 3.318 11 O -0.967 6.967 12 O -0.968 6.968 13 N -0.848 5.848 14 C -0.042 4.042 15 C -0.025 4.025 16 O -0.294 6.294 17 C 0.052 3.948 18 H 0.080 0.920 19 C -0.167 4.167 20 C -0.202 4.202 21 C -0.210 4.210 22 C -0.031 4.031 23 H 0.079 0.921 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.353 -15.335 2.118 15.485 hybrid contribution -0.194 1.333 -0.066 1.349 sum -0.547 -14.002 2.051 14.162 Atomic orbital electron populations 1.69945 1.06272 1.27838 1.47366 1.24926 0.95013 0.99609 0.93379 0.86431 0.79659 0.81394 0.79491 1.19389 1.20657 1.19393 1.20295 0.92699 0.88793 1.55878 0.91340 1.27732 1.10372 1.10327 1.06703 1.06077 0.76795 0.75229 0.73687 1.93459 1.71489 1.86227 1.45569 1.93456 1.71565 1.86258 1.45529 1.58153 1.70894 1.45242 1.10560 1.22034 1.01093 0.94235 0.86820 1.22899 0.98600 0.93349 0.87702 1.87911 1.65211 1.63008 1.13239 1.21899 0.96703 0.91987 0.84172 0.91962 1.22148 1.01236 0.96623 0.96742 1.22819 1.03078 0.92067 1.02262 1.23045 0.98111 1.03869 0.95973 1.21990 1.01093 0.93228 0.86762 0.92118 0.89783 0.89769 0.87919 0.90851 0.92861 0.87939 0.86901 0.88768 0.88619 0.88278 0.88552 0.90844 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.79 13.29 55.43 0.74 -24.05 16 2 C 0.08 2.13 5.46 -17.82 -0.10 2.03 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.86 9.13 -34.44 -0.31 -15.17 16 8 H 0.07 1.86 7.71 -52.48 -0.40 1.45 16 9 C -0.42 -10.06 5.93 36.01 0.21 -9.84 16 10 S 2.58 55.27 5.39 -107.50 -0.58 54.69 16 11 O -0.98 -22.88 16.61 -57.54 -0.96 -23.83 16 12 O -0.98 -22.82 16.62 -57.54 -0.96 -23.78 16 13 N -1.01 -17.31 3.27 -113.05 -0.37 -17.68 16 14 C 0.08 1.22 6.67 -3.53 -0.02 1.20 16 15 C 0.05 0.67 6.98 37.31 0.26 0.93 16 16 O -0.37 -5.18 10.29 -35.23 -0.36 -5.54 16 17 C 0.11 1.51 2.98 -26.57 -0.08 1.43 16 18 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 19 C -0.15 -1.66 5.40 -90.58 -0.49 -2.15 16 20 C -0.17 -1.60 10.15 -26.73 -0.27 -1.88 16 21 C -0.17 -1.67 10.18 -26.69 -0.27 -1.94 16 22 C 0.10 1.44 5.94 -3.53 -0.02 1.42 16 23 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 24 H 0.08 2.02 8.14 -51.92 -0.42 1.60 16 25 H 0.08 2.03 8.14 -51.92 -0.42 1.61 16 26 H 0.10 1.51 6.88 -51.93 -0.36 1.15 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.11 1.18 8.10 -51.93 -0.42 0.76 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.94 8.05 -51.93 -0.42 0.52 16 35 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 36 H 0.10 1.61 6.88 -51.93 -0.36 1.26 16 LS Contribution 312.26 15.07 4.71 4.71 Total: -1.00 -32.83 312.26 -9.20 -42.04 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.31 Total: 1.57 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -1.09 Total: -23.98 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.37 Total: -41.73 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -2.27 Total: -53.15 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 55.27 SS G_CDS: -0.58 Total: 54.69 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.83 -9.20 -42.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408457780.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.146 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds