Wall clock time and date at job start Mon Mar 30 2020 01:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99945 * 2 1 4 4 H 1.48500 * 109.47055 * 239.99908 * 3 2 1 5 5 H 1.48504 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47262 * 120.00022 * 3 2 1 7 7 C 1.37871 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00097 * 359.97438 * 7 2 1 10 10 S 1.81397 * 109.47231 * 179.97438 * 9 7 2 11 11 O 1.42102 * 110.54136 * 68.37384 * 10 9 7 12 12 O 1.42096 * 110.54063 * 291.62506 * 10 9 7 13 13 N 1.65592 * 104.44875 * 179.97438 * 10 9 7 14 14 C 1.47158 * 120.98256 * 90.00188 * 13 10 9 15 15 C 1.53296 * 108.38515 * 129.44362 * 14 13 10 16 16 O 1.42965 * 109.22371 * 52.30093 * 15 14 13 17 17 C 1.42961 * 114.16470 * 297.41773 * 16 15 14 18 18 H 1.08993 * 109.51640 * 302.60790 * 17 16 15 19 19 C 1.53008 * 109.50998 * 182.50282 * 17 16 15 20 20 C 1.53000 * 117.49506 * 60.00273 * 19 17 16 21 21 C 1.53002 * 60.02940 * 107.50086 * 20 19 17 22 22 C 1.47156 * 120.98202 * 269.97834 * 13 10 9 23 23 H 0.96998 * 119.99941 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46762 * 59.99831 * 9 7 2 25 25 H 1.09005 * 109.46748 * 300.00119 * 9 7 2 26 26 H 1.08996 * 109.68085 * 9.71861 * 14 13 10 27 27 H 1.09001 * 109.70834 * 249.17988 * 14 13 10 28 28 H 1.08996 * 109.51114 * 292.37819 * 15 14 13 29 29 H 1.09000 * 109.55153 * 172.25241 * 15 14 13 30 30 H 1.08999 * 115.55053 * 274.33616 * 19 17 16 31 31 H 1.09002 * 117.49833 * 215.00191 * 20 19 17 32 32 H 1.09002 * 117.49953 * 0.02562 * 20 19 17 33 33 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 34 34 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 35 35 H 1.08994 * 109.68140 * 110.83799 * 22 13 10 36 36 H 1.09000 * 109.68350 * 350.27807 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8779 -0.0021 11 8 3.1275 -3.9388 1.2344 12 8 3.1256 -3.9377 -1.2396 13 7 1.4795 -5.2340 -0.0012 14 6 1.0434 -5.8542 -1.2624 15 6 1.3659 -7.3516 -1.2018 16 8 0.8193 -7.9026 -0.0011 17 6 1.3690 -7.3523 1.1984 18 1 2.4497 -7.4932 1.2018 19 6 0.7578 -8.0574 2.4110 20 6 0.9654 -9.5687 2.5281 21 6 1.7193 -8.6191 3.4612 22 6 1.0465 -5.8548 1.2608 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 1.5736 -5.3981 -2.0984 27 1 -0.0303 -5.7148 -1.3886 28 1 2.4468 -7.4917 -1.2075 29 1 0.9290 -7.8541 -2.0647 30 1 -0.1905 -7.6510 2.7627 31 1 0.1538 -10.1565 2.9569 32 1 1.5378 -10.0606 1.7416 33 1 1.4037 -8.5822 4.5039 34 1 2.7872 -8.4860 3.2881 35 1 -0.0268 -5.7155 1.3891 36 1 1.5789 -5.3992 2.0957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408457780.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:19 Heat of formation + Delta-G solvation = -116.555512 kcal Electronic energy + Delta-G solvation = -20069.093586 eV Core-core repulsion = 16873.343354 eV Total energy + Delta-G solvation = -3195.750233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.56610 -38.13495 -37.69142 -36.92225 -35.72935 -35.43340 -32.16034 -31.06463 -28.24572 -25.60045 -25.47876 -23.16020 -22.83994 -21.52529 -19.84832 -19.22276 -18.35122 -17.54631 -17.53159 -17.19239 -16.64323 -16.15491 -16.03351 -15.79132 -15.34374 -15.10558 -14.46469 -14.23238 -14.07470 -13.58571 -13.47946 -13.19418 -13.10255 -12.94407 -12.73750 -12.54596 -12.50829 -12.36023 -12.17530 -11.86516 -11.73502 -11.40214 -11.22721 -11.07174 -10.98859 -10.80272 -9.74463 -8.43587 -6.62965 -0.53860 1.36710 1.39843 1.48175 1.79333 2.29567 2.48831 2.89727 2.96858 3.15506 3.29969 3.62095 3.69889 3.87575 4.05811 4.08041 4.18843 4.25810 4.32404 4.45106 4.54669 4.62359 4.68335 4.76482 4.80130 4.83769 4.94736 5.02193 5.10512 5.27270 5.29733 5.31426 5.53688 5.68870 6.15640 6.47358 7.09266 8.68625 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.031293 B = 0.004854 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.542679 B = 5767.047215 C = 6025.116406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.027 3.973 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.571 4.571 8 H 0.064 0.936 9 C -0.429 4.429 10 S 2.616 3.384 11 O -0.997 6.997 12 O -0.996 6.996 13 N -1.009 6.009 14 C 0.074 3.926 15 C 0.053 3.947 16 O -0.378 6.378 17 C 0.115 3.885 18 H 0.054 0.946 19 C -0.165 4.165 20 C -0.156 4.156 21 C -0.169 4.169 22 C 0.087 3.913 23 H 0.274 0.726 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.137 0.863 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.212 -16.271 2.284 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.610 4.610 8 H 0.082 0.918 9 C -0.563 4.563 10 S 2.717 3.283 11 O -0.988 6.988 12 O -0.987 6.987 13 N -0.847 5.847 14 C -0.051 4.051 15 C -0.025 4.025 16 O -0.296 6.296 17 C 0.055 3.945 18 H 0.072 0.928 19 C -0.184 4.184 20 C -0.193 4.193 21 C -0.206 4.206 22 C -0.038 4.038 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.155 0.845 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.110 0.890 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.556 -16.329 2.272 16.495 hybrid contribution -0.174 1.547 -0.127 1.562 sum -0.730 -14.782 2.145 14.954 Atomic orbital electron populations 1.70022 1.07548 1.28993 1.47824 1.25835 0.95955 1.03139 0.92719 0.85525 0.78756 0.77362 0.79862 1.18649 1.19270 1.18684 1.20735 0.93007 0.90802 1.56433 0.91800 1.27810 1.11092 1.11447 1.05966 1.04704 0.76074 0.74943 0.72623 1.93422 1.72140 1.86685 1.46552 1.93421 1.72155 1.86707 1.46414 1.57810 1.70672 1.43663 1.12579 1.22361 1.02045 0.95435 0.85271 1.23046 0.98857 0.92008 0.88546 1.87921 1.65306 1.62927 1.13494 1.21884 0.96491 0.90872 0.85227 0.92837 1.22166 1.02014 0.97759 0.96445 1.22885 1.03301 0.91138 1.01975 1.23141 0.97709 1.03159 0.96604 1.22247 1.01834 0.94309 0.85395 0.91655 0.90365 0.90450 0.88312 0.89198 0.93151 0.84528 0.86130 0.87094 0.89007 0.86664 0.88987 0.89369 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.70 13.29 21.45 0.28 -51.41 16 2 C 0.03 1.49 5.46 84.65 0.46 1.96 16 3 Si 0.96 42.57 29.54 68.60 2.03 44.59 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.57 -32.17 9.13 25.60 0.23 -31.94 16 8 H 0.06 3.54 7.71 -2.91 -0.02 3.52 16 9 C -0.43 -21.31 5.93 71.24 0.42 -20.89 16 10 S 2.62 113.23 5.39 -56.49 -0.30 112.92 16 11 O -1.00 -47.18 16.61 -127.65 -2.12 -49.30 16 12 O -1.00 -46.76 16.62 -127.65 -2.12 -48.88 16 13 N -1.01 -34.00 3.27 -511.59 -1.67 -35.67 16 14 C 0.07 2.05 6.67 86.35 0.58 2.62 16 15 C 0.05 1.24 6.98 72.08 0.50 1.74 16 16 O -0.38 -9.64 10.29 -148.98 -1.53 -11.17 16 17 C 0.11 2.95 2.98 30.70 0.09 3.04 16 18 H 0.05 1.46 7.90 -2.39 -0.02 1.44 16 19 C -0.17 -3.40 5.40 -10.77 -0.06 -3.45 16 20 C -0.16 -2.67 10.15 30.60 0.31 -2.35 16 21 C -0.17 -2.95 10.18 30.62 0.31 -2.63 16 22 C 0.09 2.58 5.94 86.36 0.51 3.09 16 23 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.08 3.88 8.14 -2.39 -0.02 3.86 16 25 H 0.08 3.86 8.14 -2.39 -0.02 3.84 16 26 H 0.10 2.83 6.88 -2.39 -0.02 2.81 16 27 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.12 2.27 8.10 -2.39 -0.02 2.25 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.68 8.05 -2.39 -0.02 1.66 16 35 H 0.09 2.33 8.12 -2.39 -0.02 2.31 16 36 H 0.09 2.96 6.88 -2.39 -0.02 2.94 16 Total: -1.00 -69.52 312.26 -1.01 -70.53 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 1.06 Total: 17.20 kcal Atomic # 6 Polarization: -52.17 SS G_CDS: 3.37 Total: -48.81 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -1.39 Total: -87.09 kcal Atomic # 8 Polarization: -103.58 SS G_CDS: -5.78 Total: -109.36 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 113.23 SS G_CDS: -0.30 Total: 112.92 kcal Total: -69.52 -1.01 -70.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408457780.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.026 kcal (2) G-P(sol) polarization free energy of solvation -69.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds