Wall clock time and date at job start Mon Mar 30 2020 01:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40056 * 125.94770 * 2 1 4 4 C 1.31863 * 108.22737 * 179.97438 * 3 2 1 5 5 C 1.47727 * 125.97797 * 179.97438 * 4 3 2 6 6 O 1.21569 * 119.99645 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99781 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.99745 * 179.97438 * 7 5 4 9 9 C 1.50693 * 109.47333 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99598 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00485 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99531 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00351 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47302 * 60.00120 * 13 11 9 15 15 H 1.48507 * 109.47378 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47465 * 300.00120 * 13 11 9 17 17 C 1.41055 * 108.04249 * 359.97438 * 4 3 2 18 18 C 1.35593 * 107.79477 * 0.02562 * 17 4 3 19 19 O 1.35778 * 126.08274 * 180.02562 * 18 17 4 20 20 C 1.42893 * 116.99874 * 2.60497 * 19 18 17 21 21 F 1.39895 * 109.47491 * 298.80754 * 20 19 18 22 22 F 1.39902 * 109.47246 * 58.80911 * 20 19 18 23 23 H 1.08992 * 109.47306 * 85.20947 * 1 2 3 24 24 H 1.09002 * 109.46984 * 205.20560 * 1 2 3 25 25 H 1.08994 * 109.46839 * 325.20310 * 1 2 3 26 26 H 0.96998 * 120.00584 * 359.97438 * 7 5 4 27 27 H 1.09002 * 109.47061 * 300.00172 * 8 7 5 28 28 H 1.09006 * 109.46851 * 59.99835 * 8 7 5 29 29 H 0.97001 * 120.00210 * 179.97438 * 12 11 9 30 30 H 1.07992 * 126.10582 * 180.02562 * 17 4 3 31 31 H 1.09002 * 109.47029 * 178.80890 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2873 1.1338 0.0000 4 6 3.5433 0.7325 0.0006 5 6 4.7339 1.6071 0.0002 6 8 5.8470 1.1184 0.0003 7 7 4.5859 2.9467 -0.0002 8 6 5.7666 3.8141 0.0000 9 6 5.3303 5.2564 -0.0012 10 1 4.2787 5.5025 -0.0016 11 6 6.2736 6.2620 -0.0017 12 7 7.5541 5.9624 -0.0017 13 14 5.7328 8.0500 -0.0025 14 1 4.9195 8.3217 1.2100 15 1 6.9296 8.9292 -0.0024 16 1 4.9193 8.3206 -1.2150 17 6 3.5513 -0.6781 0.0015 18 6 2.2626 -1.0997 0.0010 19 8 1.8438 -2.3913 0.0020 20 6 2.8535 -3.4006 0.0619 21 9 3.6828 -3.2977 -1.0601 22 9 3.6158 -3.2295 1.2224 23 1 -0.3633 0.0858 -1.0240 24 1 -0.3633 -0.9298 0.4377 25 1 -0.3633 0.8439 0.5864 26 1 3.6977 3.3366 -0.0007 27 1 6.3633 3.6153 0.8903 28 1 6.3640 3.6147 -0.8897 29 1 8.2178 6.6698 -0.0025 30 1 4.4273 -1.3095 0.0026 31 1 2.3837 -4.3840 0.0774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427609708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:29 Heat of formation + Delta-G solvation = -98.284012 kcal Electronic energy + Delta-G solvation = -20763.143056 eV Core-core repulsion = 16910.804405 eV Total energy + Delta-G solvation = -3852.338651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.56451 -47.62995 -41.48941 -38.80883 -38.09974 -34.20232 -33.41726 -32.26983 -29.83628 -27.84836 -26.95662 -26.23128 -23.54589 -21.82283 -21.46634 -19.82627 -18.83808 -18.27148 -18.24695 -17.03226 -16.46165 -16.10332 -15.64415 -15.14190 -14.74904 -14.48625 -14.31488 -14.28790 -14.13498 -14.00197 -13.78294 -13.09078 -12.99118 -12.65429 -12.53302 -12.33417 -11.91993 -11.70855 -11.03371 -10.90439 -10.83840 -10.29912 -9.40494 -9.34388 -9.26589 -8.70106 -8.64119 -7.87787 -6.12449 -4.19069 1.39923 1.45095 2.18090 2.66350 3.13973 3.29763 3.33966 3.35948 3.88085 3.93483 3.96258 4.25600 4.31915 4.42046 4.94964 4.95699 5.03842 5.21724 5.23731 5.44416 5.69226 5.93823 6.35182 6.79230 7.26287 7.33792 7.46012 7.53724 7.72446 7.99668 8.62402 8.78480 9.04742 9.46704 10.97834 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.003781 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.944118 B = 7404.485529 C = 8099.132531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.359 5.359 3 N -0.240 5.240 4 C 0.072 3.928 5 C 0.578 3.422 6 O -0.538 6.538 7 N -0.691 5.691 8 C 0.248 3.752 9 C -0.543 4.543 10 H 0.064 0.936 11 C 0.064 3.936 12 N -0.886 5.886 13 Si 0.905 3.095 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.265 4.265 18 C 0.252 3.748 19 O -0.318 6.318 20 C 0.428 3.572 21 F -0.191 7.191 22 F -0.191 7.191 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.398 0.602 27 H 0.032 0.968 28 H 0.032 0.968 29 H 0.266 0.734 30 H 0.163 0.837 31 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.977 -19.007 0.188 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.150 5.150 3 N -0.070 5.070 4 C -0.096 4.096 5 C 0.359 3.641 6 O -0.414 6.414 7 N -0.339 5.339 8 C 0.127 3.873 9 C -0.582 4.582 10 H 0.082 0.918 11 C -0.139 4.139 12 N -0.523 5.523 13 Si 0.732 3.268 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.295 4.295 18 C 0.085 3.915 19 O -0.231 6.231 20 C 0.338 3.662 21 F -0.172 7.172 22 F -0.172 7.172 23 H 0.097 0.903 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.232 0.768 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.181 0.819 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -15.988 -18.369 0.182 24.353 hybrid contribution -0.006 0.372 -0.007 0.372 sum -15.994 -17.997 0.175 24.078 Atomic orbital electron populations 1.21945 0.73287 1.04729 1.03944 1.48637 1.06825 1.00752 1.58836 1.77905 1.00827 1.03870 1.24377 1.22323 0.92491 0.94014 1.00782 1.16965 0.85842 0.82495 0.78792 1.90774 1.24284 1.74970 1.51342 1.46415 1.12636 1.04635 1.70203 1.19230 0.82373 0.87510 0.98146 1.21184 0.93482 0.90184 1.53315 0.91792 1.24935 0.94697 0.99628 0.94671 1.69965 1.00063 1.33451 1.48853 0.86453 0.78022 0.83585 0.78719 1.20054 1.21087 1.20047 1.21187 0.94812 0.95180 1.18304 1.18572 0.89845 0.80459 1.02671 1.86298 1.35981 1.11688 1.89183 1.23408 0.78267 0.92215 0.72354 1.93156 1.74273 1.96579 1.53225 1.93159 1.77818 1.96077 1.50183 0.90321 0.89173 0.88701 0.76814 0.95032 0.95033 0.92384 0.81911 0.79395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 11.44 59.85 0.68 1.50 16 2 N -0.36 -4.85 4.04 -68.18 -0.28 -5.13 16 3 N -0.24 -4.07 12.26 33.34 0.41 -3.66 16 4 C 0.07 1.36 7.09 -82.91 -0.59 0.77 16 5 C 0.58 13.06 7.83 -12.38 -0.10 12.96 16 6 O -0.54 -13.79 16.90 5.31 0.09 -13.70 16 7 N -0.69 -15.96 5.55 -62.46 -0.35 -16.31 16 8 C 0.25 6.78 5.43 -5.19 -0.03 6.75 16 9 C -0.54 -15.13 9.28 -34.44 -0.32 -15.45 16 10 H 0.06 1.68 7.60 -52.48 -0.40 1.28 16 11 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 12 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 13 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.26 -4.42 8.80 -39.46 -0.35 -4.77 16 18 C 0.25 3.47 7.46 -16.72 -0.12 3.35 16 19 O -0.32 -3.17 10.36 -19.05 -0.20 -3.37 16 20 C 0.43 3.24 5.99 101.05 0.61 3.84 16 21 F -0.19 -1.95 16.07 2.25 0.04 -1.91 16 22 F -0.19 -1.95 16.12 2.25 0.04 -1.92 16 23 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.09 0.52 8.04 -51.93 -0.42 0.10 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.40 8.34 8.02 -40.82 -0.33 8.01 16 27 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.16 2.72 6.61 -52.49 -0.35 2.37 16 31 H 0.19 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 293.50 15.07 4.42 4.42 Total: -1.00 -35.15 293.50 -3.16 -38.31 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -2.74 Total: 2.05 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -0.31 Total: 10.67 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.52 Total: -50.73 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.11 Total: -17.06 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.07 Total: -3.83 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -35.15 -3.16 -38.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427609708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.978 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds