Wall clock time and date at job start Mon Mar 30 2020 01:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46512 * 1 3 3 C 1.36935 * 119.99638 * 2 1 4 4 H 1.08005 * 119.99860 * 203.04612 * 3 2 1 5 5 C 1.38813 * 120.00455 * 23.04747 * 3 2 1 6 6 N 1.31616 * 119.99737 * 13.04708 * 5 3 2 7 7 Si 1.86798 * 119.99957 * 193.05262 * 5 3 2 8 8 H 1.48493 * 109.47431 * 90.00048 * 7 5 3 9 9 H 1.48504 * 109.46731 * 209.99819 * 7 5 3 10 10 H 1.48500 * 109.47264 * 329.99576 * 7 5 3 11 11 C 1.46503 * 119.99983 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.47327 * 89.99652 * 11 2 1 13 13 C 1.38165 * 119.97282 * 270.02268 * 12 11 2 14 14 C 1.38710 * 119.94604 * 179.97438 * 13 12 11 15 15 O 1.35898 * 120.05878 * 180.02562 * 14 13 12 16 16 C 1.38755 * 119.88625 * 0.02562 * 14 13 12 17 17 C 1.38124 * 119.94496 * 359.97060 * 16 14 13 18 18 C 1.50701 * 119.97201 * 180.02562 * 17 16 14 19 19 F 1.39902 * 109.47047 * 269.97712 * 18 17 16 20 20 F 1.39894 * 109.47111 * 29.98023 * 18 17 16 21 21 F 1.39904 * 109.47148 * 149.97750 * 18 17 16 22 22 C 1.38242 * 119.97256 * 89.99552 * 12 11 2 23 23 H 1.08999 * 109.46257 * 275.12829 * 1 2 3 24 24 H 1.08991 * 109.47119 * 35.12617 * 1 2 3 25 25 H 1.08993 * 109.46654 * 155.13088 * 1 2 3 26 26 H 0.97000 * 120.00204 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.46846 * 329.99330 * 11 2 1 28 28 H 1.08997 * 109.46906 * 210.00236 * 11 2 1 29 29 H 1.08001 * 120.02704 * 359.97438 * 13 12 11 30 30 H 0.96695 * 113.99797 * 90.00489 * 15 14 13 31 31 H 1.08004 * 120.02839 * 179.97438 * 16 14 13 32 32 H 1.08001 * 119.94066 * 359.72856 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2233 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4131 2.2595 1.1479 7 14 2.3142 4.0076 0.1425 8 1 1.7943 4.5521 -1.1374 9 1 1.9754 4.9374 1.2498 10 1 3.7891 3.8590 0.0547 11 6 2.1976 -1.2688 -0.0006 12 6 2.4487 -1.7032 -1.4215 13 6 1.5270 -2.5003 -2.0727 14 6 1.7585 -2.8994 -3.3809 15 8 0.8531 -3.6830 -4.0237 16 6 2.9159 -2.4973 -4.0319 17 6 3.8342 -1.7005 -3.3765 18 6 5.0913 -1.2629 -4.0832 19 9 6.1021 -2.2046 -3.8627 20 9 4.8424 -1.1587 -5.4559 21 9 5.4963 -0.0191 -3.5871 22 6 3.6009 -1.3035 -2.0726 23 1 -0.3632 0.0919 1.0236 24 1 -0.3633 0.8404 -0.5912 25 1 -0.3632 -0.9323 -0.4322 26 1 -0.0141 3.0661 1.4765 27 1 1.6086 -2.0286 0.5130 28 1 3.1500 -1.1386 0.5134 29 1 0.6270 -2.8123 -1.5637 30 1 0.1752 -3.1880 -4.5037 31 1 3.0987 -2.8071 -5.0503 32 1 4.3178 -0.6765 -1.5634 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589496351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:31 Heat of formation + Delta-G solvation = -164.698471 kcal Electronic energy + Delta-G solvation = -21423.577583 eV Core-core repulsion = 17548.439023 eV Total energy + Delta-G solvation = -3875.138560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.21223 -48.72554 -48.67418 -40.92802 -38.25096 -37.08273 -34.06414 -32.37604 -31.12550 -28.04863 -27.57989 -27.07126 -23.85066 -23.14862 -22.08317 -19.69196 -19.54119 -19.29809 -18.68404 -18.07065 -17.28389 -16.91283 -16.76814 -15.93900 -15.58191 -15.50779 -15.43261 -15.13849 -15.04579 -14.98392 -14.83536 -14.77183 -13.73363 -13.68717 -13.49974 -13.22991 -12.86909 -12.82685 -12.78085 -12.48891 -12.17671 -11.98640 -11.87764 -11.59543 -10.66433 -10.11816 -9.70228 -8.80892 -7.83403 -5.32816 -0.09829 0.18047 1.45476 1.47445 1.55123 1.59526 2.31170 2.53766 2.64433 2.94139 3.27220 3.32679 3.39257 3.82582 3.85212 4.04489 4.05908 4.33077 4.36869 4.77454 4.81606 4.84362 4.97112 5.06376 5.21505 5.35209 5.54284 5.64514 5.64939 5.73209 6.31803 6.79434 7.14575 7.84506 8.27325 9.19220 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.016625 B = 0.006527 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.847532 B = 4288.887357 C = 5449.910259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.609 5.609 3 C -0.258 4.258 4 H 0.070 0.930 5 C -0.049 4.049 6 N -0.936 5.936 7 Si 0.959 3.041 8 H -0.289 1.289 9 H -0.294 1.294 10 H -0.268 1.268 11 C 0.180 3.820 12 C -0.076 4.076 13 C -0.108 4.108 14 C 0.109 3.891 15 O -0.498 6.498 16 C -0.109 4.109 17 C -0.175 4.175 18 C 0.515 3.485 19 F -0.177 7.177 20 F -0.176 7.176 21 F -0.182 7.182 22 C -0.077 4.077 23 H 0.008 0.992 24 H 0.012 0.988 25 H 0.035 0.965 26 H 0.248 0.752 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.143 0.857 30 H 0.413 0.587 31 H 0.155 0.845 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.333 -10.713 -11.036 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.331 5.331 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.244 4.244 6 N -0.583 5.583 7 Si 0.788 3.212 8 H -0.216 1.216 9 H -0.221 1.221 10 H -0.193 1.193 11 C 0.054 3.946 12 C -0.079 4.079 13 C -0.127 4.127 14 C 0.065 3.935 15 O -0.312 6.312 16 C -0.128 4.128 17 C -0.177 4.177 18 C 0.461 3.539 19 F -0.158 7.158 20 F -0.157 7.157 21 F -0.163 7.163 22 C -0.096 4.096 23 H 0.027 0.973 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.161 0.839 30 H 0.272 0.728 31 H 0.172 0.828 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.583 -11.021 -10.726 16.047 hybrid contribution 0.121 1.710 -0.285 1.738 sum 4.703 -9.311 -11.010 15.167 Atomic orbital electron populations 1.20582 0.82479 0.96063 0.97829 1.44092 1.02116 1.01081 1.85785 1.19465 0.98435 0.86613 1.34287 0.91185 1.25689 0.98628 1.01511 0.98603 1.70209 1.20812 1.27538 1.39745 0.85379 0.78600 0.80444 0.76772 1.21606 1.22083 1.19318 1.19917 0.97161 0.87714 0.89820 1.20854 0.92785 0.94581 0.99658 1.21673 0.99833 0.96291 0.94864 1.18166 0.90808 0.93420 0.91143 1.84762 1.42507 1.34559 1.69324 1.21205 0.93894 0.96566 1.01121 1.19787 0.95731 1.05767 0.96383 1.18203 0.84168 0.74752 0.76794 1.93211 1.63063 1.65068 1.94505 1.93172 1.94243 1.95929 1.32347 1.93204 1.91789 1.43833 1.87491 1.20886 0.98110 0.97692 0.92909 0.97344 0.96921 0.94618 0.94269 0.91127 0.92155 0.83897 0.72773 0.82762 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.21 8.98 127.76 1.15 9.36 16 2 N -0.61 -28.87 2.91 -731.30 -2.12 -31.00 16 3 C -0.26 -13.67 9.65 84.03 0.81 -12.85 16 4 H 0.07 3.62 7.86 -2.91 -0.02 3.60 16 5 C -0.05 -2.70 5.10 84.86 0.43 -2.27 16 6 N -0.94 -54.41 10.71 21.65 0.23 -54.18 16 7 Si 0.96 44.78 29.57 68.60 2.03 46.81 16 8 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 C 0.18 6.72 5.77 85.63 0.49 7.21 16 12 C -0.08 -2.48 5.46 -19.88 -0.11 -2.59 16 13 C -0.11 -3.03 9.64 22.37 0.22 -2.82 16 14 C 0.11 2.74 6.70 22.51 0.15 2.89 16 15 O -0.50 -10.08 13.50 -92.40 -1.25 -11.33 16 16 C -0.11 -2.74 9.34 22.37 0.21 -2.53 16 17 C -0.18 -5.00 5.45 -19.88 -0.11 -5.11 16 18 C 0.51 14.07 3.36 71.24 0.24 14.31 16 19 F -0.18 -4.71 17.30 44.97 0.78 -3.93 16 20 F -0.18 -4.51 16.46 44.97 0.74 -3.77 16 21 F -0.18 -5.51 16.46 44.97 0.74 -4.77 16 22 C -0.08 -2.49 9.05 22.28 0.20 -2.29 16 23 H 0.01 0.43 7.34 -2.39 -0.02 0.41 16 24 H 0.01 0.63 7.34 -2.39 -0.02 0.61 16 25 H 0.04 1.36 8.03 -2.39 -0.02 1.34 16 26 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.07 2.36 8.02 -2.39 -0.02 2.34 16 28 H 0.06 2.26 7.98 -2.39 -0.02 2.24 16 29 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.41 4.51 9.06 -74.06 -0.67 3.84 16 31 H 0.15 3.18 7.60 -2.91 -0.02 3.16 16 32 H 0.13 4.22 7.60 -2.91 -0.02 4.20 16 Total: -1.00 -62.59 293.95 5.33 -57.26 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 0.50 Total: 1.59 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 3.68 Total: 3.32 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -1.89 Total: -85.17 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.25 Total: -11.33 kcal Atomic # 9 Polarization: -14.73 SS G_CDS: 2.26 Total: -12.47 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -62.59 5.33 -57.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589496351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.438 kcal (2) G-P(sol) polarization free energy of solvation -62.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds