Wall clock time and date at job start Mon Mar 30 2020 01:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81396 * 115.55522 * 2 1 4 4 O 1.42098 * 110.54143 * 282.71004 * 3 2 1 5 5 O 1.42095 * 110.54535 * 145.95534 * 3 2 1 6 6 N 1.65608 * 104.44890 * 34.32848 * 3 2 1 7 7 C 1.47426 * 125.64560 * 90.02539 * 6 3 2 8 8 C 1.54910 * 104.83073 * 204.09186 * 7 6 3 9 9 C 1.55150 * 101.58106 * 322.99371 * 8 7 6 10 10 O 1.42908 * 110.72179 * 276.95966 * 9 8 7 11 11 C 1.50703 * 110.72227 * 153.86845 * 9 8 7 12 12 H 1.07997 * 119.99860 * 241.45545 * 11 9 8 13 13 C 1.37879 * 120.00128 * 61.44627 * 11 9 8 14 14 N 1.31517 * 119.99760 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99961 * 180.02562 * 13 11 9 16 16 H 1.48510 * 109.46852 * 60.00209 * 15 13 11 17 17 H 1.48497 * 109.46821 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47515 * 300.00606 * 15 13 11 19 19 C 1.47019 * 125.64893 * 269.71855 * 6 3 2 20 20 C 1.53002 * 117.51578 * 145.70262 * 2 1 3 21 21 C 1.52996 * 60.00163 * 107.47600 * 20 2 1 22 22 H 1.08996 * 109.46988 * 85.57741 * 1 2 3 23 23 H 1.09002 * 109.47449 * 205.58853 * 1 2 3 24 24 H 1.09007 * 109.46574 * 325.58456 * 1 2 3 25 25 H 1.09002 * 110.36613 * 322.93094 * 7 6 3 26 26 H 1.08996 * 110.36652 * 85.25516 * 7 6 3 27 27 H 1.08997 * 111.00440 * 81.06524 * 8 7 6 28 28 H 1.08998 * 111.00397 * 204.88045 * 8 7 6 29 29 H 0.96700 * 113.99841 * 298.54921 * 10 9 8 30 30 H 0.96997 * 119.99392 * 179.97438 * 14 13 11 31 31 H 1.08995 * 109.88426 * 298.39785 * 19 6 3 32 32 H 1.09007 * 109.88165 * 59.55797 * 19 6 3 33 33 H 1.08998 * 117.49888 * 214.96960 * 20 2 1 34 34 H 1.09003 * 117.49958 * 359.97438 * 20 2 1 35 35 H 1.08998 * 117.50138 * 252.50891 * 21 20 2 36 36 H 1.09002 * 117.49602 * 107.49048 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.3125 1.6365 0.0000 4 8 2.2635 2.2126 -1.2980 5 8 3.5223 1.6108 0.7449 6 7 1.2960 2.5806 0.9044 7 6 1.3785 2.7794 2.3629 8 6 -0.0556 3.1799 2.7902 9 6 -0.5049 4.0556 1.5908 10 8 -0.0263 5.3944 1.7349 11 6 -2.0054 4.0401 1.4517 12 1 -2.4603 3.6533 0.5518 13 6 -2.7975 4.5194 2.4734 14 7 -2.2435 4.9907 3.5691 15 14 -4.6574 4.4995 2.3012 16 1 -5.1221 3.1016 2.1127 17 1 -5.2741 5.0655 3.5278 18 1 -5.0546 5.3158 1.1260 19 6 0.1658 3.3643 0.3849 20 6 2.2369 -1.1210 0.7646 21 6 2.2364 -1.1208 -0.7653 22 1 -0.3633 0.0792 -1.0246 23 1 -0.3634 -0.9269 0.4439 24 1 -0.3633 0.8479 0.5809 25 1 1.6766 1.8539 2.8556 26 1 2.0814 3.5786 2.5976 27 1 -0.6925 2.3013 2.8926 28 1 -0.0408 3.7589 3.7135 29 1 -0.3585 5.8483 2.5215 30 1 -2.8008 5.3283 4.2877 31 1 0.5267 4.1128 -0.3204 32 1 -0.5489 2.7036 -0.1060 33 1 3.1721 -0.8751 1.2677 34 1 1.6119 -1.8585 1.2682 35 1 1.6111 -1.8583 -1.2685 36 1 3.1713 -0.8749 -1.2689 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592077041.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:46 Heat of formation + Delta-G solvation = -90.966574 kcal Electronic energy + Delta-G solvation = -20766.349769 eV Core-core repulsion = 17571.709156 eV Total energy + Delta-G solvation = -3194.640613 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.09497 -37.73727 -36.81797 -35.68224 -34.30233 -32.20426 -29.32802 -28.58245 -28.20645 -24.83926 -22.78446 -22.14504 -21.32819 -19.78099 -18.33690 -17.37918 -17.11724 -16.58076 -15.53477 -15.04231 -14.92446 -14.37406 -14.18506 -13.48712 -13.34771 -13.21885 -12.95600 -12.48465 -12.09430 -12.03661 -11.94107 -11.79417 -11.68446 -11.58760 -11.34083 -11.15948 -11.06178 -10.85199 -10.52939 -10.43067 -10.40816 -10.22883 -10.04911 -9.32585 -8.66926 -8.35529 -8.17046 -6.28350 -4.36475 0.53108 2.88302 3.19835 3.22394 3.25572 3.28653 4.05430 4.24224 4.32204 4.45390 4.63910 4.81414 5.00567 5.29462 5.37556 5.43877 5.57530 5.69594 5.75269 5.79619 5.82612 5.93299 6.05323 6.19855 6.27531 6.48867 6.65152 6.81846 6.96890 7.05063 7.34668 7.39843 7.73309 8.04049 8.65442 9.31576 9.42735 10.78968 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.027635 B = 0.006176 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.952098 B = 4532.642905 C = 4915.697887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.650 4.650 3 S 2.655 3.345 4 O -0.954 6.954 5 O -0.960 6.960 6 N -1.002 6.002 7 C 0.122 3.878 8 C -0.132 4.132 9 C 0.250 3.750 10 O -0.585 6.585 11 C -0.536 4.536 12 H 0.063 0.937 13 C 0.073 3.927 14 N -0.894 5.894 15 Si 0.901 3.099 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.134 3.866 20 C -0.124 4.124 21 C -0.130 4.130 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.381 0.619 30 H 0.268 0.732 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.032 -10.823 -2.693 12.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.738 4.738 3 S 2.747 3.253 4 O -0.945 6.945 5 O -0.950 6.950 6 N -0.841 5.841 7 C -0.003 4.003 8 C -0.172 4.172 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.575 4.575 12 H 0.082 0.918 13 C -0.130 4.130 14 N -0.534 5.534 15 Si 0.729 3.271 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.200 1.200 19 C 0.010 3.990 20 C -0.162 4.162 21 C -0.169 4.169 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.231 0.769 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.152 -10.675 -3.544 12.820 hybrid contribution -1.945 -0.367 0.701 2.100 sum 4.207 -11.042 -2.844 12.153 Atomic orbital electron populations 1.21194 0.87298 1.04339 1.03235 1.32452 1.08287 1.16660 1.16386 1.03581 0.73431 0.74893 0.73380 1.93559 1.86743 1.74251 1.39943 1.93547 1.42315 1.86801 1.72353 1.58366 1.47434 1.59537 1.18804 1.22108 1.00381 0.99623 0.78180 1.23298 0.91683 1.00811 1.01372 1.19462 0.91095 0.80256 0.88262 1.86144 1.74341 1.28173 1.50700 1.21502 0.90592 1.42502 1.02902 0.91845 1.24984 0.99314 0.93962 0.94729 1.69696 1.36075 1.41271 1.06310 0.86507 0.84515 0.78467 0.77626 1.20165 1.21161 1.20021 1.21885 0.85780 0.93486 0.97860 1.22972 1.01684 0.97075 0.94479 1.22821 1.01013 0.97863 0.95189 0.91368 0.91565 0.89447 0.92471 0.91921 0.91607 0.89603 0.76866 0.92176 0.91708 0.91327 0.86806 0.87190 0.87008 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 9.73 37.16 0.36 -0.98 16 2 C -0.65 -8.65 2.87 -90.62 -0.26 -8.91 16 3 S 2.66 46.03 5.84 -107.50 -0.63 45.41 16 4 O -0.95 -19.16 17.60 -57.54 -1.01 -20.17 16 5 O -0.96 -18.09 16.89 -57.54 -0.97 -19.07 16 6 N -1.00 -19.05 2.72 -111.42 -0.30 -19.35 16 7 C 0.12 2.29 6.88 -2.53 -0.02 2.28 16 8 C -0.13 -2.79 5.47 -24.59 -0.13 -2.93 16 9 C 0.25 5.89 0.85 -89.93 -0.08 5.82 16 10 O -0.58 -14.67 13.07 -35.23 -0.46 -15.13 16 11 C -0.54 -13.51 8.22 -34.44 -0.28 -13.79 16 12 H 0.06 1.57 7.57 -52.49 -0.40 1.17 16 13 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 14 N -0.89 -22.57 10.67 55.43 0.59 -21.97 16 15 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 C 0.13 2.85 5.76 -3.06 -0.02 2.83 16 20 C -0.12 -1.34 9.81 -26.73 -0.26 -1.60 16 21 C -0.13 -1.37 10.02 -26.73 -0.27 -1.64 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.07 0.74 7.90 -51.93 -0.41 0.33 16 24 H 0.09 1.30 5.44 -51.93 -0.28 1.01 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 28 H 0.09 1.91 7.54 -51.93 -0.39 1.52 16 29 H 0.38 9.53 7.46 45.56 0.34 9.87 16 30 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 31 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 32 H 0.07 1.34 6.41 -51.93 -0.33 1.01 16 33 H 0.11 1.22 7.66 -51.93 -0.40 0.82 16 34 H 0.11 0.99 8.05 -51.93 -0.42 0.57 16 35 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 305.69 15.07 4.61 4.61 Total: -1.00 -29.36 305.69 -8.62 -37.99 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -4.38 Total: 10.18 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.05 Total: -17.19 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.29 Total: -41.33 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -2.44 Total: -54.37 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 46.03 SS G_CDS: -0.63 Total: 45.41 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.36 -8.62 -37.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592077041.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.981 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds