Wall clock time and date at job start Mon Mar 30 2020 02:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 C 1.50700 * 119.99903 * 180.02562 * 2 1 3 5 5 S 1.81391 * 109.47332 * 104.99804 * 4 2 1 6 6 O 1.42108 * 110.54536 * 291.62526 * 5 4 2 7 7 O 1.42102 * 110.54329 * 68.37456 * 5 4 2 8 8 N 1.65598 * 104.45281 * 180.02562 * 5 4 2 9 9 C 1.47022 * 125.65136 * 90.02264 * 8 5 4 10 10 C 1.54322 * 107.27535 * 181.02414 * 9 8 5 11 11 C 1.55157 * 102.94073 * 22.19423 * 10 9 8 12 12 O 1.42906 * 111.00343 * 82.60729 * 11 10 9 13 13 C 1.50692 * 111.00682 * 206.42434 * 11 10 9 14 14 H 1.07999 * 120.00476 * 118.54386 * 13 11 10 15 15 C 1.37881 * 119.99630 * 298.54835 * 13 11 10 16 16 N 1.31508 * 120.00320 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99727 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47743 * 59.99825 * 17 15 13 19 19 H 1.48501 * 109.47145 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47109 * 299.99551 * 17 15 13 21 21 C 1.47423 * 125.64930 * 269.71803 * 8 5 4 22 22 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 24 24 H 1.08999 * 109.47280 * 90.00097 * 3 2 1 25 25 H 1.08997 * 109.47027 * 210.00056 * 3 2 1 26 26 H 1.09000 * 109.47497 * 330.00290 * 3 2 1 27 27 H 1.08997 * 109.47093 * 225.00074 * 4 2 1 28 28 H 1.09002 * 109.46760 * 344.99819 * 4 2 1 29 29 H 1.08996 * 109.88070 * 300.44932 * 9 8 5 30 30 H 1.09009 * 109.88092 * 61.45224 * 9 8 5 31 31 H 1.09000 * 110.72033 * 140.55482 * 10 9 8 32 32 H 1.08989 * 110.71850 * 263.65622 * 10 9 8 33 33 H 0.96694 * 113.99650 * 61.45488 * 12 11 10 34 34 H 0.97003 * 120.00437 * 180.02562 * 16 15 13 35 35 H 1.08995 * 110.37038 * 274.74976 * 21 8 5 36 36 H 1.09009 * 110.36533 * 37.06800 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 16 2.7491 -1.6068 -1.6526 6 8 1.7083 -1.8654 -2.5849 7 8 3.7779 -0.6708 -1.9441 8 7 3.5408 -3.0546 -1.5135 9 6 2.9511 -4.3801 -1.7515 10 6 4.0510 -5.4271 -1.4769 11 6 5.0355 -4.6627 -0.5530 12 8 4.5926 -4.6943 0.8054 13 6 6.4318 -5.2160 -0.6757 14 1 7.2341 -4.5844 -1.0275 15 6 6.6851 -6.5289 -0.3390 16 7 5.7083 -7.2980 0.0898 17 14 8.4160 -7.2146 -0.4906 18 1 9.3344 -6.4375 0.3799 19 1 8.4228 -8.6388 -0.0698 20 1 8.8670 -7.1129 -1.9018 21 6 4.9555 -3.2275 -1.1365 22 1 -0.5400 0.9354 -0.0004 23 1 -0.5400 -0.9352 -0.0044 24 1 2.2452 1.6197 1.0276 25 1 3.0159 1.1747 -0.5138 26 1 1.4745 2.0648 -0.5138 27 1 2.8745 -1.2568 0.7261 28 1 1.3855 -2.1162 0.2651 29 1 2.1110 -4.5389 -1.0754 30 1 2.6140 -4.4556 -2.7854 31 1 3.6373 -6.2959 -0.9648 32 1 4.5403 -5.7246 -2.4042 33 1 4.5337 -5.5841 1.1792 34 1 5.8865 -8.2215 0.3270 35 1 5.5959 -3.1360 -2.0138 36 1 5.2390 -2.4948 -0.3808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592077841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:09 Heat of formation + Delta-G solvation = -104.994360 kcal Electronic energy + Delta-G solvation = -20297.968802 eV Core-core repulsion = 17102.719898 eV Total energy + Delta-G solvation = -3195.248903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.06227 -36.82583 -36.30818 -35.63886 -34.27360 -32.23829 -29.27118 -28.31125 -28.26668 -27.31011 -24.86056 -21.55799 -19.87097 -19.12394 -18.42712 -17.52015 -16.89436 -16.22067 -15.73160 -14.99076 -14.93806 -14.48801 -14.26724 -14.15450 -13.46938 -13.27148 -12.92397 -12.40756 -12.30068 -12.08932 -11.90776 -11.80736 -11.74807 -11.68447 -11.49456 -11.35409 -11.08218 -10.98864 -10.79204 -10.55424 -10.43648 -10.02412 -9.44185 -9.18215 -8.69939 -8.32513 -8.23520 -6.29265 -4.37250 0.43329 2.04367 3.00625 3.21404 3.26329 3.29904 4.03972 4.24442 4.31872 4.46226 4.72233 4.96718 5.15182 5.37227 5.40975 5.48311 5.58380 5.71236 5.81652 5.87582 5.90141 6.01334 6.18682 6.34259 6.35540 6.55513 6.60418 6.78010 6.94517 7.02781 7.33268 7.36905 7.72647 8.02334 8.65182 9.28172 9.36748 10.78078 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.036090 B = 0.004979 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.662585 B = 5622.485033 C = 5656.567173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.128 4.128 3 C -0.138 4.138 4 C -0.595 4.595 5 S 2.626 3.374 6 O -0.959 6.959 7 O -0.955 6.955 8 N -1.006 6.006 9 C 0.121 3.879 10 C -0.132 4.132 11 C 0.249 3.751 12 O -0.585 6.585 13 C -0.537 4.537 14 H 0.065 0.935 15 C 0.074 3.926 16 N -0.896 5.896 17 Si 0.902 3.098 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.137 3.863 22 H 0.108 0.892 23 H 0.104 0.896 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.135 0.865 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.381 0.619 34 H 0.268 0.732 35 H 0.076 0.924 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.847 8.822 0.675 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.130 4.130 3 C -0.194 4.194 4 C -0.722 4.722 5 S 2.720 3.280 6 O -0.950 6.950 7 O -0.946 6.946 8 N -0.845 5.845 9 C -0.004 4.004 10 C -0.172 4.172 11 C 0.208 3.792 12 O -0.394 6.394 13 C -0.576 4.576 14 H 0.083 0.917 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.730 3.270 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.200 1.200 21 C 0.012 3.988 22 H 0.127 0.873 23 H 0.123 0.877 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.160 0.840 28 H 0.153 0.847 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.231 0.769 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.996 9.882 -0.147 12.712 hybrid contribution 0.748 -1.407 0.841 1.802 sum -7.247 8.475 0.694 11.172 Atomic orbital electron populations 1.23912 0.94866 1.02779 0.99384 1.21081 0.95432 0.93463 1.02994 1.21099 1.01261 0.93833 1.03248 1.29820 1.12283 1.03179 1.26923 1.04553 0.73961 0.72625 0.76822 1.93548 1.59202 1.84314 1.57909 1.93553 1.56067 1.61837 1.83127 1.58496 1.21178 1.20649 1.84186 1.21836 0.97093 0.82260 0.99235 1.23157 0.95580 0.97045 1.01412 1.19675 0.91630 0.88216 0.79722 1.86073 1.90068 1.34757 1.28504 1.21445 0.94249 0.96449 1.45434 0.91705 1.24980 0.97645 0.96568 0.93730 1.69702 1.31701 1.07817 1.44237 0.86489 0.84023 0.77774 0.78745 1.20039 1.21187 1.20033 1.22189 0.78854 0.99201 0.98533 0.87336 0.87743 0.90572 0.90203 0.90979 0.84000 0.84704 0.93037 0.92441 0.89699 0.91364 0.76895 0.92197 0.90597 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 13.90 29.01 0.40 -1.46 16 2 C -0.13 -1.60 5.31 -101.07 -0.54 -2.14 16 3 C -0.14 -1.53 10.03 36.00 0.36 -1.17 16 4 C -0.60 -8.13 6.38 36.01 0.23 -7.90 16 5 S 2.63 44.83 5.63 -107.50 -0.61 44.22 16 6 O -0.96 -18.26 17.60 -57.54 -1.01 -19.27 16 7 O -0.96 -18.17 16.51 -57.54 -0.95 -19.12 16 8 N -1.01 -18.95 3.62 -111.29 -0.40 -19.35 16 9 C 0.12 2.26 6.89 -3.06 -0.02 2.24 16 10 C -0.13 -2.83 5.37 -24.90 -0.13 -2.96 16 11 C 0.25 5.76 0.87 -89.51 -0.08 5.68 16 12 O -0.59 -13.83 13.17 -35.23 -0.46 -14.30 16 13 C -0.54 -13.61 8.27 -34.44 -0.28 -13.89 16 14 H 0.06 1.63 7.79 -52.49 -0.41 1.22 16 15 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 16 N -0.90 -22.53 10.76 55.43 0.60 -21.93 16 17 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C 0.14 2.85 6.08 -2.41 -0.01 2.83 16 22 H 0.11 0.93 8.04 -52.48 -0.42 0.51 16 23 H 0.10 1.07 7.90 -52.49 -0.41 0.65 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.98 7.00 -51.93 -0.36 0.62 16 26 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 27 H 0.14 1.84 8.14 -51.93 -0.42 1.42 16 28 H 0.13 1.67 7.86 -51.92 -0.41 1.26 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 31 H 0.08 1.88 7.55 -51.93 -0.39 1.49 16 32 H 0.07 1.49 8.04 -51.94 -0.42 1.08 16 33 H 0.38 9.12 7.56 45.56 0.34 9.46 16 34 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 35 H 0.08 1.56 8.03 -51.93 -0.42 1.15 16 36 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -29.01 313.38 -7.87 -36.88 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -4.57 Total: 10.33 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -0.17 Total: -17.00 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.19 Total: -41.28 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -2.43 Total: -52.68 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 44.83 SS G_CDS: -0.61 Total: 44.22 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.01 -7.87 -36.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592077841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.110 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds