Wall clock time and date at job start Mon Mar 30 2020 01:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00034 * 2 1 4 4 H 1.48500 * 109.47586 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47097 * 300.00698 * 3 2 1 6 6 H 1.48507 * 109.47034 * 60.00113 * 3 2 1 7 7 C 1.37878 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00204 * 172.23024 * 7 2 1 9 9 C 1.50702 * 119.99709 * 352.22453 * 7 2 1 10 10 C 1.53008 * 115.54687 * 84.78813 * 9 7 2 11 11 S 1.81403 * 109.46996 * 65.19454 * 10 9 7 12 12 O 1.42107 * 110.54179 * 285.43516 * 11 10 9 13 13 O 1.42099 * 110.54281 * 62.18532 * 11 10 9 14 14 N 1.65598 * 104.44822 * 173.81231 * 11 10 9 15 15 C 1.46498 * 119.99983 * 64.99823 * 14 11 10 16 16 C 1.50701 * 109.46858 * 164.99933 * 15 14 11 17 17 C 1.31001 * 120.00161 * 125.00036 * 16 15 14 18 18 C 1.50697 * 120.00627 * 179.97438 * 17 16 15 19 19 O 1.42893 * 109.47182 * 134.99949 * 18 17 16 20 20 C 1.52998 * 117.50003 * 230.45549 * 9 7 2 21 21 C 1.53001 * 117.50322 * 299.11646 * 9 7 2 22 22 H 0.97000 * 120.00178 * 5.01107 * 1 2 3 23 23 H 1.08999 * 109.47023 * 305.19308 * 10 9 7 24 24 H 1.08997 * 109.46770 * 185.19124 * 10 9 7 25 25 H 0.97006 * 119.99860 * 244.99629 * 14 11 10 26 26 H 1.09000 * 109.47323 * 284.99621 * 15 14 11 27 27 H 1.09004 * 109.47472 * 45.00472 * 15 14 11 28 28 H 1.07997 * 120.00074 * 304.99693 * 16 15 14 29 29 H 1.08001 * 119.99823 * 0.02562 * 17 16 15 30 30 H 1.09001 * 109.47442 * 255.00646 * 18 17 16 31 31 H 1.09005 * 109.46552 * 15.00174 * 18 17 16 32 32 H 0.96709 * 114.00113 * 180.02562 * 19 18 17 33 33 H 1.08997 * 117.49955 * 215.00464 * 20 9 7 34 34 H 1.09001 * 117.50062 * 0.02622 * 20 9 7 35 35 H 1.08998 * 117.49626 * 359.97438 * 21 9 7 36 36 H 1.08997 * 117.49705 * 144.97210 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0771 -1.1982 -0.1270 9 6 1.2615 -2.4932 0.1755 10 6 0.6669 -3.0915 -1.1011 11 16 2.0071 -3.5624 -2.2293 12 8 2.5779 -2.4101 -2.8341 13 8 2.8268 -4.5625 -1.6400 14 7 1.2438 -4.3418 -3.4751 15 6 0.3177 -3.6075 -4.3408 16 6 0.0488 -4.4125 -5.5861 17 6 -1.1827 -4.7045 -5.9241 18 6 -1.4517 -5.5090 -7.1696 19 8 -2.4215 -6.5189 -6.8842 20 6 1.7806 -3.4659 1.2362 21 6 0.4827 -2.6910 1.4775 22 1 -0.4850 0.8368 -0.0734 23 1 0.0274 -2.3531 -1.5848 24 1 0.0777 -3.9731 -0.8490 25 1 1.4099 -5.2846 -3.6318 26 1 -0.6185 -3.4368 -3.8093 27 1 0.7594 -2.6496 -4.6157 28 1 0.8714 -4.7486 -6.1999 29 1 -2.0053 -4.3680 -5.3105 30 1 -1.8311 -4.8516 -7.9519 31 1 -0.5269 -5.9780 -7.5060 32 1 -2.6435 -7.0767 -7.6424 33 1 1.6985 -4.5320 1.0247 34 1 2.6593 -3.1660 1.8072 35 1 0.5082 -1.8815 2.2071 36 1 -0.4533 -3.2469 1.4246 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594822076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:55 Heat of formation + Delta-G solvation = -85.102571 kcal Electronic energy + Delta-G solvation = -19449.462623 eV Core-core repulsion = 16255.076292 eV Total energy + Delta-G solvation = -3194.386331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -37.59746 -36.74446 -36.31734 -35.91577 -35.04959 -32.80073 -32.03649 -28.15119 -27.51020 -25.44803 -23.56886 -21.20185 -20.15001 -19.57700 -18.61811 -17.61991 -16.92207 -16.50984 -16.08992 -15.27356 -14.96085 -14.89713 -14.63221 -14.16079 -13.78967 -13.63027 -13.14047 -12.74140 -12.42166 -11.92767 -11.81250 -11.63823 -11.27477 -11.15445 -11.01693 -10.94172 -10.93807 -10.60411 -10.56110 -10.44309 -10.11313 -9.73619 -9.51384 -9.07290 -8.94230 -8.56631 -8.08092 -6.13622 -4.23924 1.05675 1.90342 3.28966 3.36863 3.44321 3.55477 4.03507 4.37939 4.54782 4.73946 4.83296 5.01776 5.08466 5.13863 5.17642 5.22452 5.27199 5.58704 5.61175 5.74361 5.98136 6.12127 6.27722 6.38411 6.40796 6.51849 6.62395 6.73533 6.99628 7.23302 7.29923 7.31305 7.40151 7.81275 8.21287 8.82078 9.47241 10.94167 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.004840 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.960755 B = 5783.557811 C = 6133.099392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.081 3.919 3 Si 0.893 3.107 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.069 0.931 9 C 0.042 3.958 10 C -0.554 4.554 11 S 2.607 3.393 12 O -0.950 6.950 13 O -0.974 6.974 14 N -1.131 6.131 15 C 0.144 3.856 16 C -0.145 4.145 17 C -0.151 4.151 18 C 0.105 3.895 19 O -0.570 6.570 20 C -0.208 4.208 21 C -0.141 4.141 22 H 0.262 0.738 23 H 0.133 0.867 24 H 0.099 0.901 25 H 0.410 0.590 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.380 0.620 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 -9.511 -11.774 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.123 4.123 3 Si 0.720 3.280 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.552 4.552 8 H 0.087 0.913 9 C 0.040 3.960 10 C -0.687 4.687 11 S 2.705 3.295 12 O -0.940 6.940 13 O -0.964 6.964 14 N -0.887 5.887 15 C 0.018 3.982 16 C -0.165 4.165 17 C -0.170 4.170 18 C 0.028 3.972 19 O -0.376 6.376 20 C -0.245 4.245 21 C -0.181 4.181 22 H 0.072 0.928 23 H 0.151 0.849 24 H 0.118 0.882 25 H 0.242 0.758 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.226 0.774 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.519 -8.753 -11.062 14.539 hybrid contribution -0.442 0.304 -0.591 0.798 sum -3.962 -8.449 -11.653 14.929 Atomic orbital electron populations 1.69988 1.06049 1.27081 1.47945 1.24957 0.94803 0.99242 0.93339 0.86510 0.80757 0.83149 0.77623 1.19216 1.20647 1.20858 1.20574 0.93750 0.88571 1.52297 0.91267 1.18296 0.99029 0.94371 0.84332 1.29978 1.16532 1.08513 1.13693 1.05133 0.76443 0.73716 0.74251 1.93532 1.74950 1.50976 1.74559 1.93505 1.65514 1.59449 1.77962 1.55977 1.62310 1.22531 1.47885 1.20283 0.93573 0.95230 0.89103 1.22897 0.96924 0.99421 0.97209 1.22690 0.97590 0.98699 0.98013 1.21146 0.91399 0.89270 0.95395 1.86533 1.62223 1.48301 1.40531 1.23197 0.98655 0.96059 1.06612 1.22553 0.92587 1.01038 1.01884 0.92785 0.84861 0.88196 0.75764 0.91238 0.89078 0.86541 0.86164 0.92608 0.93044 0.77356 0.90659 0.89518 0.89591 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.01 12.98 55.43 0.72 -23.29 16 2 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 3 Si 0.89 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.09 8.18 -34.44 -0.28 -14.38 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 C 0.04 1.03 1.32 -155.66 -0.21 0.82 16 10 C -0.55 -11.61 5.93 37.16 0.22 -11.39 16 11 S 2.61 52.57 5.19 -107.50 -0.56 52.01 16 12 O -0.95 -22.52 17.17 -57.54 -0.99 -23.51 16 13 O -0.97 -21.46 18.08 -57.54 -1.04 -22.50 16 14 N -1.13 -16.95 5.88 -11.65 -0.07 -17.02 16 15 C 0.14 1.93 6.57 -5.19 -0.03 1.89 16 16 C -0.14 -1.57 9.25 -36.03 -0.33 -1.90 16 17 C -0.15 -1.55 9.50 -36.03 -0.34 -1.89 16 18 C 0.11 0.87 7.46 36.00 0.27 1.14 16 19 O -0.57 -5.19 13.64 -35.23 -0.48 -5.67 16 20 C -0.21 -4.60 9.96 -26.70 -0.27 -4.87 16 21 C -0.14 -3.24 9.49 -26.69 -0.25 -3.49 16 22 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 23 H 0.13 2.87 8.14 -51.92 -0.42 2.45 16 24 H 0.10 1.78 8.09 -51.93 -0.42 1.36 16 25 H 0.41 5.25 8.61 -34.47 -0.30 4.96 16 26 H 0.07 0.86 7.79 -51.93 -0.40 0.46 16 27 H 0.09 1.29 7.69 -51.93 -0.40 0.89 16 28 H 0.12 1.11 7.90 -52.49 -0.41 0.69 16 29 H 0.12 1.27 7.84 -52.49 -0.41 0.86 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.36 7.86 -51.93 -0.41 -0.05 16 32 H 0.38 1.53 9.12 45.56 0.42 1.95 16 33 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 35 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -34.14 326.75 -8.26 -42.40 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -4.42 Total: 8.22 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: -1.32 Total: -31.94 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.65 Total: -40.31 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -2.51 Total: -51.67 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 52.57 SS G_CDS: -0.56 Total: 52.01 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.14 -8.26 -42.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594822076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.703 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds