Wall clock time and date at job start Mon Mar 30 2020 01:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 120.00181 * 2 1 4 4 H 1.48502 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47259 * 300.00326 * 3 2 1 6 6 H 1.48502 * 109.46961 * 60.00513 * 3 2 1 7 7 C 1.37876 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00624 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99783 * 359.97438 * 7 2 1 10 10 C 1.53495 * 114.20817 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98460 * 139.85119 * 10 9 7 12 12 S 1.65603 * 136.05333 * 152.84365 * 11 10 9 13 13 O 1.42104 * 104.28000 * 333.93071 * 12 11 10 14 14 O 1.42104 * 104.27662 * 206.07162 * 12 11 10 15 15 C 1.81401 * 104.44975 * 90.00006 * 12 11 10 16 16 C 1.52998 * 109.47106 * 179.97438 * 15 12 11 17 17 H 1.08998 * 110.35321 * 304.31098 * 16 15 12 18 18 C 1.54947 * 110.31103 * 182.16968 * 16 15 12 19 19 C 1.55305 * 100.94425 * 204.64204 * 18 16 15 20 20 C 1.54387 * 102.24962 * 34.12994 * 19 18 16 21 21 O 1.43236 * 107.59079 * 338.64624 * 20 19 18 22 22 C 1.47058 * 87.88703 * 333.10104 * 11 10 9 23 23 H 0.97007 * 120.00097 * 359.97438 * 1 2 3 24 24 H 1.08998 * 113.28097 * 46.93152 * 9 7 2 25 25 H 1.09004 * 113.46900 * 25.07248 * 10 9 7 26 26 H 1.08996 * 113.52315 * 254.64173 * 10 9 7 27 27 H 1.09003 * 109.46827 * 60.00211 * 15 12 11 28 28 H 1.09000 * 109.47197 * 300.00286 * 15 12 11 29 29 H 1.09002 * 111.12827 * 86.71869 * 18 16 15 30 30 H 1.09008 * 111.12113 * 322.55837 * 18 16 15 31 31 H 1.08998 * 110.84418 * 275.94481 * 19 18 16 32 32 H 1.09003 * 110.84733 * 152.31891 * 19 18 16 33 33 H 1.09001 * 109.82619 * 98.16119 * 20 19 18 34 34 H 1.09004 * 109.82781 * 219.03947 * 20 19 18 35 35 H 1.09004 * 113.47061 * 141.67593 * 22 11 10 36 36 H 1.09000 * 113.47109 * 272.11661 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.1487 -3.7442 -0.0005 11 7 1.2072 -4.3593 0.9471 12 16 0.7449 -5.9008 1.3377 13 8 0.9929 -6.6509 0.1565 14 8 -0.5729 -5.7526 1.8483 15 6 1.8871 -6.3953 2.6573 16 6 1.5579 -7.8193 3.1096 17 1 0.5138 -7.8884 3.4147 18 6 2.4876 -8.2419 4.2749 19 6 2.4587 -9.7879 4.1294 20 6 2.3523 -9.9710 2.6001 21 8 1.8317 -8.7537 2.0535 22 6 0.8522 -3.0029 1.3907 23 1 -0.4850 0.8401 0.0004 24 1 0.4432 -2.5302 -0.7317 25 1 3.1372 -3.5667 0.4232 26 1 2.1884 -4.2519 -0.9642 27 1 1.7840 -5.7134 3.5014 28 1 2.9106 -6.3596 2.2842 29 1 2.0793 -7.9301 5.2362 30 1 3.4961 -7.8529 4.1337 31 1 1.5877 -10.2085 4.6319 32 1 3.3791 -10.2307 4.5100 33 1 3.3388 -10.1719 2.1823 34 1 1.6792 -10.7977 2.3727 35 1 -0.2092 -2.8807 1.6071 36 1 1.4917 -2.6258 2.1887 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594825475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:15 Heat of formation + Delta-G solvation = -83.415682 kcal Electronic energy + Delta-G solvation = -19700.089863 eV Core-core repulsion = 16505.776682 eV Total energy + Delta-G solvation = -3194.313182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69798 -38.20588 -36.55748 -35.41816 -32.65596 -32.59745 -31.97450 -28.33393 -26.58325 -24.91940 -24.49752 -22.08271 -21.66998 -19.82471 -18.11660 -17.29704 -17.08181 -16.51158 -16.19209 -15.81620 -15.49710 -14.91033 -14.55873 -13.96436 -13.82565 -13.28169 -13.06957 -12.71890 -12.69424 -12.16894 -12.01719 -11.69882 -11.62049 -11.54944 -11.52845 -11.43588 -11.28625 -11.18669 -10.97489 -10.54586 -10.35685 -10.25048 -9.81489 -9.18674 -9.03001 -8.56304 -8.15051 -6.12365 -4.18117 0.65384 3.15317 3.25604 3.34537 3.37313 3.41420 4.05681 4.21607 4.36064 4.43719 4.50287 4.60298 4.76365 4.86131 4.96908 5.13978 5.20878 5.34985 5.39887 5.45842 5.55105 5.69774 5.79770 5.87362 6.22364 6.27896 6.40481 6.49962 6.68547 6.77233 6.93913 7.55987 7.67052 7.86262 8.25489 8.86060 9.47767 10.97181 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.041410 B = 0.004063 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.994893 B = 6890.164573 C = 7068.229182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.064 0.936 9 C 0.037 3.963 10 C 0.120 3.880 11 N -1.041 6.041 12 S 2.629 3.371 13 O -0.947 6.947 14 O -0.961 6.961 15 C -0.646 4.646 16 C 0.088 3.912 17 H 0.086 0.914 18 C -0.143 4.143 19 C -0.158 4.158 20 C 0.049 3.951 21 O -0.373 6.373 22 C 0.123 3.877 23 H 0.263 0.737 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.920 -15.089 9.287 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.016 3.984 10 C -0.005 4.005 11 N -0.881 5.881 12 S 2.723 3.277 13 O -0.937 6.937 14 O -0.951 6.951 15 C -0.772 4.772 16 C 0.029 3.971 17 H 0.104 0.896 18 C -0.182 4.182 19 C -0.196 4.196 20 C -0.027 4.027 21 O -0.293 6.293 22 C -0.002 4.002 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.158 0.842 28 H 0.153 0.847 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.961 -15.693 8.764 18.646 hybrid contribution 1.109 0.889 0.963 1.717 sum 6.070 -14.804 9.727 18.725 Atomic orbital electron populations 1.69974 1.06063 1.26971 1.49037 1.25052 0.94846 0.99362 0.94402 0.86500 0.80108 0.83473 0.77665 1.19631 1.20909 1.20990 1.21007 0.93008 0.89655 1.51865 0.91788 1.20347 0.94764 0.90771 0.92532 1.22879 0.93168 0.94048 0.90450 1.60260 1.56365 1.19626 1.51892 1.04508 0.75327 0.72374 0.75538 1.93555 1.86319 1.70554 1.43276 1.93551 1.33790 1.85412 1.82375 1.30996 1.20259 1.03872 1.22075 1.22567 0.99664 0.86881 0.87948 0.89620 1.23276 1.00844 0.95218 0.98818 1.23167 1.03472 0.96353 0.96587 1.23165 0.99421 0.87441 0.92702 1.88570 1.84815 1.25031 1.30850 1.23049 0.99782 0.75622 1.01698 0.92677 0.91254 0.91278 0.92017 0.84244 0.84663 0.89373 0.89752 0.90222 0.89704 0.90939 0.90963 0.91815 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.54 13.26 55.43 0.74 -23.81 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.16 8.84 -34.44 -0.30 -13.46 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.04 0.89 3.76 -91.39 -0.34 0.55 16 10 C 0.12 2.40 8.26 -8.51 -0.07 2.33 16 11 N -1.04 -20.62 4.10 -125.35 -0.51 -21.14 16 12 S 2.63 48.40 5.84 -107.50 -0.63 47.77 16 13 O -0.95 -20.14 17.71 -58.61 -1.04 -21.18 16 14 O -0.96 -20.26 18.07 -57.54 -1.04 -21.30 16 15 C -0.65 -8.51 5.91 37.16 0.22 -8.29 16 16 C 0.09 1.10 3.42 -25.70 -0.09 1.01 16 17 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 18 C -0.14 -1.27 6.57 -24.48 -0.16 -1.43 16 19 C -0.16 -1.19 7.02 -24.78 -0.17 -1.36 16 20 C 0.05 0.49 7.79 37.88 0.30 0.78 16 21 O -0.37 -5.33 10.54 -35.24 -0.37 -5.70 16 22 C 0.12 2.68 8.25 -8.65 -0.07 2.61 16 23 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.07 1.83 8.11 -51.93 -0.42 1.41 16 25 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.14 1.52 8.14 -51.92 -0.42 1.09 16 28 H 0.13 1.63 8.14 -51.92 -0.42 1.20 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.71 8.06 -51.92 -0.42 0.29 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.07 1.38 8.10 -51.93 -0.42 0.95 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -32.55 315.58 -9.37 -41.92 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.45 Total: -0.78 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -0.79 Total: -15.60 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.22 Total: -44.95 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -2.45 Total: -48.18 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 48.40 SS G_CDS: -0.63 Total: 47.77 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.55 -9.37 -41.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.494 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds