Wall clock time and date at job start Mon Mar 30 2020 01:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99639 * 2 1 4 4 H 1.48494 * 109.47256 * 273.60010 * 3 2 1 5 5 H 1.48500 * 109.47198 * 33.60723 * 3 2 1 6 6 H 1.48507 * 109.46479 * 153.60401 * 3 2 1 7 7 C 1.37871 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00513 * 353.98539 * 7 2 1 9 9 C 1.50703 * 119.99615 * 173.99026 * 7 2 1 10 10 C 1.52999 * 115.55086 * 92.12934 * 9 7 2 11 11 S 1.81394 * 109.47608 * 39.94094 * 10 9 7 12 12 O 1.42107 * 110.53886 * 61.03008 * 11 10 9 13 13 O 1.42105 * 110.54409 * 284.28506 * 11 10 9 14 14 N 1.65596 * 104.45393 * 172.65763 * 11 10 9 15 15 C 1.46498 * 119.99856 * 64.99918 * 14 11 10 16 16 H 1.08993 * 112.84927 * 15.33363 * 15 14 11 17 17 C 1.53787 * 113.61382 * 146.53478 * 15 14 11 18 18 C 1.53776 * 87.08310 * 139.97868 * 17 15 14 19 19 H 1.09000 * 113.61159 * 89.10969 * 18 17 15 20 20 O 1.42895 * 113.61706 * 219.93539 * 18 17 15 21 21 C 1.53787 * 113.61383 * 244.13597 * 15 14 11 22 22 C 1.53005 * 117.51544 * 237.82477 * 9 7 2 23 23 C 1.52999 * 60.00044 * 107.48341 * 22 9 7 24 24 H 0.97007 * 120.00379 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 279.94124 * 10 9 7 26 26 H 1.09004 * 109.47491 * 159.94871 * 10 9 7 27 27 H 0.97000 * 120.00072 * 245.00217 * 14 11 10 28 28 H 1.09000 * 113.60807 * 254.53136 * 17 15 14 29 29 H 1.08995 * 113.61271 * 25.34447 * 17 15 14 30 30 H 0.96697 * 114.00229 * 180.02562 * 20 18 17 31 31 H 1.08994 * 113.61479 * 334.57634 * 21 15 14 32 32 H 1.09005 * 113.60863 * 105.47265 * 21 15 14 33 33 H 1.09007 * 117.49710 * 214.97112 * 22 9 7 34 34 H 1.08997 * 117.49740 * 359.97438 * 22 9 7 35 35 H 1.09003 * 117.49991 * 252.51672 * 23 22 9 36 36 H 1.08994 * 117.50483 * 107.48652 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4204 2.0905 -1.3972 5 1 1.4867 2.6295 0.7749 6 1 3.5827 1.4193 0.6225 7 6 2.0045 -1.1940 -0.0005 8 1 1.4690 -2.1268 0.0970 9 6 3.5053 -1.1975 -0.1372 10 6 4.2877 -1.1787 1.1775 11 16 3.4691 -2.2579 2.3840 12 8 3.4331 -3.5974 1.9108 13 8 2.3031 -1.6324 2.9021 14 7 4.5119 -2.3066 3.6694 15 6 4.7849 -1.0895 4.4376 16 1 4.0611 -0.2973 4.2468 17 6 5.0356 -1.3480 5.9328 18 6 6.1438 -0.2851 5.8502 19 1 5.7925 0.7281 6.0455 20 8 7.3150 -0.6200 6.5973 21 6 6.2474 -0.6217 4.3515 22 6 4.1068 -1.9804 -1.3061 23 6 4.1080 -0.4506 -1.3288 24 1 -0.4851 0.8401 0.0004 25 1 4.3219 -0.1605 1.5653 26 1 5.3028 -1.5347 1.0014 27 1 4.9421 -3.1410 3.9136 28 1 4.2007 -1.0597 6.5715 29 1 5.4054 -2.3507 6.1465 30 1 8.0155 0.0448 6.5496 31 1 6.9505 -1.4250 4.1319 32 1 6.3895 0.2522 3.7156 33 1 5.0600 -2.4819 -1.1384 34 1 3.4171 -2.4934 -1.9762 35 1 3.4188 0.0431 -2.0140 36 1 5.0617 0.0544 -1.1760 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601434508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:32 Heat of formation + Delta-G solvation = -73.652379 kcal Electronic energy + Delta-G solvation = -20309.752570 eV Core-core repulsion = 17115.862756 eV Total energy + Delta-G solvation = -3193.889813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.51026 -37.12894 -36.21540 -35.65660 -34.99546 -32.24367 -32.10400 -28.54067 -25.90885 -25.53611 -23.86459 -21.74702 -20.18550 -19.57299 -18.71514 -17.87636 -17.02574 -16.55013 -15.94124 -15.30476 -15.17796 -14.99162 -14.36929 -13.97683 -13.90814 -13.08401 -12.96849 -12.68578 -12.64348 -12.55666 -12.21197 -11.55212 -11.31849 -11.23143 -11.11393 -11.06406 -10.84211 -10.72898 -10.61613 -10.36874 -10.10441 -9.99215 -9.76875 -9.27786 -9.10200 -8.67400 -8.49677 -6.20805 -4.31915 1.03966 3.20445 3.28635 3.31489 3.43685 4.04088 4.32178 4.36030 4.43151 4.58297 4.64589 4.72267 4.76989 5.00453 5.09605 5.17011 5.40017 5.56842 5.61159 5.69945 5.73176 5.82867 5.89977 5.98269 6.04408 6.17777 6.35786 6.39558 6.59589 6.81186 7.04872 7.21821 7.40902 7.57374 8.31974 8.82970 9.41136 10.90735 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.006580 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.778553 B = 4254.003628 C = 4475.039151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.100 3.900 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.535 4.535 8 H 0.088 0.912 9 C 0.009 3.991 10 C -0.582 4.582 11 S 2.626 3.374 12 O -0.967 6.967 13 O -0.935 6.935 14 N -1.121 6.121 15 C 0.128 3.872 16 H 0.121 0.879 17 C -0.132 4.132 18 C 0.076 3.924 19 H 0.086 0.914 20 O -0.559 6.559 21 C -0.189 4.189 22 C -0.173 4.173 23 C -0.189 4.189 24 H 0.269 0.731 25 H 0.120 0.880 26 H 0.107 0.893 27 H 0.411 0.589 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.377 0.623 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.570 1.793 8.918 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.106 4.106 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.572 4.572 8 H 0.105 0.895 9 C 0.006 3.994 10 C -0.713 4.713 11 S 2.721 3.279 12 O -0.957 6.957 13 O -0.925 6.925 14 N -0.875 5.875 15 C 0.019 3.981 16 H 0.138 0.862 17 C -0.171 4.171 18 C 0.016 3.984 19 H 0.104 0.896 20 O -0.364 6.364 21 C -0.229 4.229 22 C -0.210 4.210 23 C -0.227 4.227 24 H 0.079 0.921 25 H 0.138 0.862 26 H 0.125 0.875 27 H 0.244 0.756 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.224 0.776 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.077 1.074 8.978 15.898 hybrid contribution 1.541 1.606 -0.331 2.250 sum 14.618 2.680 8.647 17.194 Atomic orbital electron populations 1.69884 1.06544 1.27535 1.46704 1.24933 0.94475 0.99017 0.92223 0.86890 0.80650 0.83483 0.78466 1.20199 1.21534 1.18265 1.20415 0.86349 0.95680 1.54787 0.89452 1.18757 0.94489 1.02291 0.83816 1.30317 1.10376 1.15520 1.15096 1.04652 0.74192 0.75339 0.73749 1.93507 1.86307 1.34718 1.81200 1.93576 1.43678 1.78243 1.76959 1.56084 1.67083 1.16126 1.48249 1.21934 0.96185 0.87925 0.92036 0.86167 1.23429 0.97280 1.00216 0.96222 1.23216 0.86557 0.98213 0.90395 0.89577 1.86520 1.27166 1.49700 1.73049 1.24334 0.98406 1.02630 0.97532 1.22964 1.01023 0.93156 1.03878 1.22943 1.01119 0.94778 1.03881 0.92131 0.86200 0.87463 0.75621 0.89933 0.88610 0.77618 0.88552 0.90571 0.90578 0.88771 0.89002 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.51 13.96 55.43 0.77 -25.74 16 2 C 0.10 2.86 5.46 -17.82 -0.10 2.77 16 3 Si 0.88 21.06 24.98 -169.99 -4.25 16.82 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -5.61 5.46 56.52 0.31 -5.30 16 7 C -0.54 -14.95 7.55 -34.44 -0.26 -15.21 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 C 0.01 0.21 1.12 -155.66 -0.17 0.03 16 10 C -0.58 -11.13 6.05 37.16 0.22 -10.90 16 11 S 2.63 53.01 4.57 -107.50 -0.49 52.52 16 12 O -0.97 -22.03 18.08 -57.54 -1.04 -23.07 16 13 O -0.93 -22.74 16.79 -57.54 -0.97 -23.71 16 14 N -1.12 -16.15 5.68 -4.20 -0.02 -16.18 16 15 C 0.13 1.59 4.31 -67.11 -0.29 1.30 16 16 H 0.12 1.55 7.75 -51.93 -0.40 1.15 16 17 C -0.13 -1.43 7.69 -25.92 -0.20 -1.62 16 18 C 0.08 0.70 5.21 -25.83 -0.13 0.57 16 19 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 20 O -0.56 -5.21 13.68 -35.23 -0.48 -5.69 16 21 C -0.19 -1.89 7.73 -25.82 -0.20 -2.09 16 22 C -0.17 -3.52 9.88 -26.73 -0.26 -3.78 16 23 C -0.19 -3.89 7.54 -26.73 -0.20 -4.09 16 24 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.12 2.15 6.56 -51.92 -0.34 1.81 16 26 H 0.11 1.64 7.95 -51.92 -0.41 1.23 16 27 H 0.41 5.03 8.90 -34.47 -0.31 4.72 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.38 1.86 9.12 45.56 0.42 2.27 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 34 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 35 H 0.09 1.98 7.01 -51.93 -0.36 1.62 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 308.68 15.07 4.65 4.65 Total: -1.00 -35.69 308.68 -7.86 -43.55 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -4.44 Total: 9.87 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: -1.59 Total: -33.03 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.75 Total: -41.92 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -2.49 Total: -52.47 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.25 Total: 16.82 kcal Atomic # 16 Polarization: 53.01 SS G_CDS: -0.49 Total: 52.52 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.69 -7.86 -43.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601434508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.100 kcal (2) G-P(sol) polarization free energy of solvation -35.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds