Wall clock time and date at job start Mon Mar 30 2020 01:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 S 1.65606 * 134.45609 * 204.64192 * 12 11 9 14 14 O 1.42105 * 104.27298 * 25.93867 * 13 12 11 15 15 O 1.42102 * 104.27712 * 153.79676 * 13 12 11 16 16 C 1.81395 * 104.44852 * 269.87090 * 13 12 11 17 17 C 1.53000 * 109.47296 * 179.97438 * 16 13 12 18 18 C 1.52998 * 109.47683 * 179.97438 * 17 16 13 19 19 C 1.52998 * 117.50025 * 243.75067 * 18 17 16 20 20 C 1.52998 * 117.50205 * 175.08680 * 18 17 16 21 21 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 24 24 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 25 25 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 26 26 H 1.08998 * 109.47389 * 299.99532 * 16 13 12 27 27 H 1.08999 * 109.47297 * 59.99691 * 16 13 12 28 28 H 1.09002 * 109.47225 * 300.00352 * 17 16 13 29 29 H 1.09007 * 109.46840 * 59.99498 * 17 16 13 30 30 H 1.09000 * 115.54935 * 29.41643 * 18 17 16 31 31 H 1.09001 * 117.49778 * 359.97438 * 19 18 17 32 32 H 1.08996 * 117.50057 * 145.01812 * 19 18 17 33 33 H 1.08993 * 117.49973 * 214.98339 * 20 18 17 34 34 H 1.09002 * 117.49660 * 359.97438 * 20 18 17 35 35 H 1.08993 * 113.76952 * 221.15022 * 21 12 11 36 36 H 1.08995 * 113.86700 * 89.76371 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 16 0.7628 -5.8183 1.4859 14 8 -0.5750 -5.6807 1.9448 15 8 1.0719 -6.6316 0.3624 16 6 1.8747 -6.1941 2.8690 17 6 1.5730 -7.5972 3.3992 18 6 2.5112 -7.9145 4.5654 19 6 3.4985 -9.0692 4.3839 20 6 2.2912 -9.2324 5.3108 21 6 2.1609 -3.7402 0.0462 22 1 -0.4850 0.8401 0.0004 23 1 -0.3474 -1.7969 -1.0267 24 1 1.3275 -2.4975 2.2141 25 1 -0.3215 -2.8326 1.5249 26 1 2.9085 -6.1492 2.5266 27 1 1.7236 -5.4650 3.6651 28 1 0.5392 -7.6418 3.7417 29 1 1.7238 -8.3266 2.6032 30 1 2.8431 -7.0557 5.1488 31 1 3.4792 -9.6031 3.4338 32 1 4.4796 -8.9702 4.8482 33 1 2.4786 -9.2406 6.3845 34 1 1.4777 -9.8732 4.9706 35 1 2.2027 -4.2899 -0.8940 36 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615291704.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:44 Heat of formation + Delta-G solvation = -67.478912 kcal Electronic energy + Delta-G solvation = -19650.095440 eV Core-core repulsion = 16456.473329 eV Total energy + Delta-G solvation = -3193.622112 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.43200 -37.92469 -36.61872 -35.48546 -33.86611 -32.45157 -32.16137 -27.79326 -25.27355 -24.98169 -24.25208 -22.60987 -20.75711 -19.58114 -18.17443 -17.48584 -16.74873 -16.18620 -15.96266 -15.61971 -15.13627 -14.54199 -14.21765 -14.19279 -13.64786 -13.13735 -12.99432 -12.67316 -12.12393 -11.98346 -11.85225 -11.68678 -11.65231 -11.59779 -11.58666 -11.44371 -11.08014 -10.83159 -10.78780 -10.52100 -10.25449 -10.22374 -10.13369 -9.27633 -8.73334 -8.53705 -8.01636 -6.33798 -4.44834 0.63121 3.09169 3.17963 3.24502 3.26450 3.53092 4.16367 4.20850 4.39161 4.49269 4.54003 4.66631 4.85453 4.89359 4.98697 5.23872 5.32820 5.39707 5.44086 5.62929 5.66191 5.76643 5.86954 6.01043 6.02802 6.08953 6.31742 6.41458 6.69671 6.81893 7.02800 7.53287 7.68486 7.88456 8.57723 9.25748 9.51792 10.72443 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.031375 B = 0.004365 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.202966 B = 6412.688092 C = 6815.921225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.245 3.755 10 O -0.572 6.572 11 C 0.103 3.897 12 N -1.027 6.027 13 S 2.618 3.382 14 O -0.959 6.959 15 O -0.962 6.962 16 C -0.639 4.639 17 C -0.081 4.081 18 C -0.146 4.146 19 C -0.182 4.182 20 C -0.182 4.182 21 C 0.129 3.871 22 H 0.273 0.727 23 H 0.391 0.609 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.359 -10.699 8.626 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.089 0.911 9 C 0.201 3.799 10 O -0.383 6.383 11 C -0.022 4.022 12 N -0.867 5.867 13 S 2.713 3.287 14 O -0.949 6.949 15 O -0.953 6.953 16 C -0.766 4.766 17 C -0.119 4.119 18 C -0.165 4.165 19 C -0.219 4.219 20 C -0.220 4.220 21 C 0.004 3.996 22 H 0.084 0.916 23 H 0.246 0.754 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.737 -11.909 8.189 15.210 hybrid contribution 0.803 1.538 0.892 1.951 sum 5.540 -10.371 9.081 14.857 Atomic orbital electron populations 1.69410 1.06142 1.28231 1.49799 1.25086 0.95014 0.99788 0.93223 0.86410 0.79478 0.81824 0.78858 1.21064 1.20007 1.19915 1.21532 0.93844 0.90085 1.52310 0.91132 1.19847 0.85637 0.90668 0.83723 1.86055 1.47072 1.49871 1.55340 1.23887 1.00076 0.76022 1.02214 1.60214 1.53625 1.19816 1.53090 1.04740 0.75510 0.72900 0.75502 1.93553 1.32577 1.85406 1.83409 1.93542 1.85953 1.68213 1.47543 1.30863 1.18672 1.05405 1.21693 1.20881 1.00032 0.93469 0.97562 1.22249 1.01467 0.92890 0.99873 1.23100 0.94691 1.02391 1.01706 1.23018 1.00581 1.00106 0.98248 1.23049 0.92290 0.93861 0.90443 0.91631 0.75398 0.90512 0.90928 0.85331 0.85318 0.90115 0.90436 0.87362 0.88529 0.88745 0.88693 0.88593 0.90741 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.90 11.20 55.43 0.62 -22.28 16 2 C 0.07 1.78 5.40 -17.82 -0.10 1.69 16 3 Si 0.91 19.30 29.54 -169.99 -5.02 14.28 16 4 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -13.33 8.61 -34.44 -0.30 -13.63 16 8 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.25 5.88 1.40 -90.84 -0.13 5.75 16 10 O -0.57 -14.98 13.49 -35.23 -0.48 -15.46 16 11 C 0.10 2.25 8.32 -2.84 -0.02 2.23 16 12 N -1.03 -20.43 4.00 -118.50 -0.47 -20.91 16 13 S 2.62 46.74 5.93 -107.50 -0.64 46.10 16 14 O -0.96 -20.01 18.02 -57.54 -1.04 -21.04 16 15 O -0.96 -19.64 18.02 -57.54 -1.04 -20.68 16 16 C -0.64 -8.09 6.14 37.16 0.23 -7.86 16 17 C -0.08 -0.94 5.50 -26.73 -0.15 -1.09 16 18 C -0.15 -1.46 5.73 -90.62 -0.52 -1.98 16 19 C -0.18 -1.61 10.18 -26.69 -0.27 -1.88 16 20 C -0.18 -1.57 10.25 -26.69 -0.27 -1.84 16 21 C 0.13 2.62 8.31 -2.96 -0.02 2.60 16 22 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 23 H 0.39 10.34 6.60 45.56 0.30 10.64 16 24 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 25 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 26 H 0.13 1.44 8.14 -51.92 -0.42 1.02 16 27 H 0.13 1.46 8.14 -51.92 -0.42 1.04 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 30 H 0.11 1.03 8.08 -51.93 -0.42 0.61 16 31 H 0.10 0.83 8.03 -51.93 -0.42 0.42 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 LS Contribution 319.37 15.07 4.81 4.81 Total: -1.00 -30.49 319.37 -9.51 -40.01 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -4.71 Total: 11.18 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -1.55 Total: -16.02 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.15 Total: -43.18 kcal Atomic # 8 Polarization: -54.63 SS G_CDS: -2.55 Total: -57.18 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 16 Polarization: 46.74 SS G_CDS: -0.64 Total: 46.10 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.49 -9.51 -40.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615291704.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.473 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds