Wall clock time and date at job start Mon Mar 30 2020 01:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 S 1.65606 * 134.45609 * 204.64192 * 12 11 9 14 14 O 1.42105 * 104.27298 * 25.93867 * 13 12 11 15 15 O 1.42102 * 104.27712 * 153.79676 * 13 12 11 16 16 C 1.81395 * 104.44852 * 269.87090 * 13 12 11 17 17 C 1.53000 * 109.47296 * 179.97438 * 16 13 12 18 18 C 1.52998 * 109.47683 * 179.97438 * 17 16 13 19 19 C 1.52998 * 117.50025 * 243.75067 * 18 17 16 20 20 C 1.52998 * 117.50205 * 175.08680 * 18 17 16 21 21 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 24 24 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 25 25 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 26 26 H 1.08998 * 109.47389 * 299.99532 * 16 13 12 27 27 H 1.08999 * 109.47297 * 59.99691 * 16 13 12 28 28 H 1.09002 * 109.47225 * 300.00352 * 17 16 13 29 29 H 1.09007 * 109.46840 * 59.99498 * 17 16 13 30 30 H 1.09000 * 115.54935 * 29.41643 * 18 17 16 31 31 H 1.09001 * 117.49778 * 359.97438 * 19 18 17 32 32 H 1.08996 * 117.50057 * 145.01812 * 19 18 17 33 33 H 1.08993 * 117.49973 * 214.98339 * 20 18 17 34 34 H 1.09002 * 117.49660 * 359.97438 * 20 18 17 35 35 H 1.08993 * 113.76952 * 221.15022 * 21 12 11 36 36 H 1.08995 * 113.86700 * 89.76371 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 16 0.7628 -5.8183 1.4859 14 8 -0.5750 -5.6807 1.9448 15 8 1.0719 -6.6316 0.3624 16 6 1.8747 -6.1941 2.8690 17 6 1.5730 -7.5972 3.3992 18 6 2.5112 -7.9145 4.5654 19 6 3.4985 -9.0692 4.3839 20 6 2.2912 -9.2324 5.3108 21 6 2.1609 -3.7402 0.0462 22 1 -0.4850 0.8401 0.0004 23 1 -0.3474 -1.7969 -1.0267 24 1 1.3275 -2.4975 2.2141 25 1 -0.3215 -2.8326 1.5249 26 1 2.9085 -6.1492 2.5266 27 1 1.7236 -5.4650 3.6651 28 1 0.5392 -7.6418 3.7417 29 1 1.7238 -8.3266 2.6032 30 1 2.8431 -7.0557 5.1488 31 1 3.4792 -9.6031 3.4338 32 1 4.4796 -8.9702 4.8482 33 1 2.4786 -9.2406 6.3845 34 1 1.4777 -9.8732 4.9706 35 1 2.2027 -4.2899 -0.8940 36 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615291704.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:43 Heat of formation + Delta-G solvation = -90.612719 kcal Electronic energy + Delta-G solvation = -19651.098597 eV Core-core repulsion = 16456.473329 eV Total energy + Delta-G solvation = -3194.625269 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.14156 -38.65442 -38.16162 -37.02603 -35.72866 -34.08829 -33.41222 -29.54971 -26.93168 -26.53981 -25.45073 -23.23579 -21.57915 -21.28040 -19.72016 -19.26412 -18.32050 -17.44490 -17.39802 -16.95380 -16.52018 -15.98711 -15.55459 -15.47672 -14.94478 -14.83190 -14.62784 -13.87331 -13.61870 -13.37003 -13.25453 -13.21301 -13.14577 -12.84703 -12.79228 -12.70315 -12.51649 -12.33832 -12.22787 -12.13644 -11.79292 -11.16818 -11.02553 -10.87947 -10.59119 -10.27198 -9.71500 -8.19519 -6.37488 -0.76725 1.50861 1.52711 1.59866 1.62670 2.44039 2.81002 2.93141 2.98458 3.08042 3.46284 3.69136 3.76309 3.82229 4.05476 4.14937 4.31775 4.38141 4.42588 4.50411 4.67002 4.74636 4.78728 4.79837 4.84603 5.03742 5.05754 5.11266 5.25988 5.27181 5.29151 5.76224 5.84394 6.03191 6.69726 7.35782 7.50554 8.85855 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.031375 B = 0.004365 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.202966 B = 6412.688092 C = 6815.921225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.027 3.973 3 Si 0.970 3.030 4 H -0.288 1.288 5 H -0.264 1.264 6 H -0.274 1.274 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.211 3.789 10 O -0.591 6.591 11 C 0.111 3.889 12 N -1.036 6.036 13 S 2.616 3.384 14 O -0.998 6.998 15 O -0.995 6.995 16 C -0.598 4.598 17 C -0.092 4.092 18 C -0.156 4.156 19 C -0.182 4.182 20 C -0.179 4.179 21 C 0.135 3.865 22 H 0.273 0.727 23 H 0.384 0.616 24 H 0.098 0.902 25 H 0.047 0.953 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.620 -11.211 10.506 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.173 4.173 3 Si 0.795 3.205 4 H -0.214 1.214 5 H -0.189 1.189 6 H -0.199 1.199 7 C -0.591 4.591 8 H 0.098 0.902 9 C 0.168 3.832 10 O -0.402 6.402 11 C -0.015 4.015 12 N -0.875 5.875 13 S 2.718 3.282 14 O -0.989 6.989 15 O -0.986 6.986 16 C -0.731 4.731 17 C -0.131 4.131 18 C -0.176 4.176 19 C -0.219 4.219 20 C -0.217 4.217 21 C 0.011 3.989 22 H 0.083 0.917 23 H 0.238 0.762 24 H 0.116 0.884 25 H 0.066 0.934 26 H 0.173 0.827 27 H 0.170 0.830 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.973 -12.408 10.012 17.402 hybrid contribution 0.105 1.567 0.353 1.610 sum 7.078 -10.841 10.365 16.585 Atomic orbital electron populations 1.69511 1.07396 1.28769 1.50586 1.25834 0.95681 1.02826 0.92971 0.85423 0.78141 0.77921 0.78978 1.21411 1.18916 1.19927 1.21847 0.94406 0.90737 1.52151 0.90202 1.20358 0.86102 0.92364 0.84351 1.86042 1.47726 1.49643 1.56810 1.23641 0.98787 0.77358 1.01699 1.60000 1.53733 1.19778 1.53961 1.04586 0.75527 0.71724 0.76388 1.93501 1.35950 1.85545 1.83943 1.93496 1.86290 1.68319 1.50453 1.30470 1.17416 1.06880 1.18350 1.21047 1.00903 0.92512 0.98604 1.22213 1.01871 0.93891 0.99608 1.23206 0.95270 1.01457 1.01923 1.23130 1.00548 0.98951 0.99024 1.23074 0.93229 0.91860 0.90778 0.91730 0.76202 0.88392 0.93448 0.82694 0.82986 0.90031 0.90187 0.86447 0.88593 0.87513 0.87380 0.88467 0.91608 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.90 11.20 21.45 0.24 -47.66 16 2 C 0.03 1.33 5.40 84.66 0.46 1.79 16 3 Si 0.97 39.15 29.54 68.60 2.03 41.17 16 4 H -0.29 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.55 -27.09 8.61 25.60 0.22 -26.87 16 8 H 0.08 3.66 7.81 -2.91 -0.02 3.63 16 9 C 0.21 10.18 1.40 -10.88 -0.02 10.16 16 10 O -0.59 -32.06 13.49 -148.98 -2.01 -34.07 16 11 C 0.11 4.83 8.32 86.45 0.72 5.55 16 12 N -1.04 -40.60 4.00 -532.66 -2.13 -42.73 16 13 S 2.62 91.61 5.93 -56.49 -0.34 91.27 16 14 O -1.00 -42.13 18.02 -127.65 -2.30 -44.43 16 15 O -0.99 -40.52 18.02 -127.65 -2.30 -42.82 16 16 C -0.60 -13.16 6.14 71.98 0.44 -12.72 16 17 C -0.09 -1.87 5.50 30.59 0.17 -1.70 16 18 C -0.16 -2.58 5.73 -10.80 -0.06 -2.64 16 19 C -0.18 -2.62 10.18 30.62 0.31 -2.31 16 20 C -0.18 -2.53 10.25 30.62 0.31 -2.22 16 21 C 0.14 5.39 8.31 86.49 0.72 6.11 16 22 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 23 H 0.38 21.27 6.60 -74.06 -0.49 20.79 16 24 H 0.10 3.77 8.09 -2.39 -0.02 3.75 16 25 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 26 H 0.15 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.15 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.60 7.87 -2.38 -0.02 1.58 16 30 H 0.12 1.74 8.08 -2.39 -0.02 1.72 16 31 H 0.10 1.39 8.03 -2.39 -0.02 1.37 16 32 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.12 3.78 8.09 -2.39 -0.02 3.76 16 Total: -1.00 -66.60 319.37 -2.95 -69.55 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: 0.59 Total: 34.57 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 3.27 Total: -24.85 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -1.89 Total: -90.39 kcal Atomic # 8 Polarization: -114.71 SS G_CDS: -6.61 Total: -121.32 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.17 kcal Atomic # 16 Polarization: 91.61 SS G_CDS: -0.34 Total: 91.27 kcal Total: -66.60 -2.95 -69.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615291704.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.061 kcal (2) G-P(sol) polarization free energy of solvation -66.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds